Clone BS12041 Report

Search the DGRC for BS12041

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:120
Well:41
Vector:pDNR-Dual
Associated Gene/TranscriptCG13217-RA
Protein status:BS12041.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12041.3prime Sequence

372 bp (372 high quality bases) assembled on 2006-06-16

> BS12041.3prime
ATGGTCTAGAAAGCTTTTAGCGGAACTTCTTGCCGAATAGGCTCTTGAAG
CTGCCAAGTCCACCGAAGCCGCCGCCGAAACCGTGTCCTCCAAAACCACC
GCCAAAGCCGTGACCAAGACCACCGAATCCTCCCTTCAAGCCGCCGAGTC
CTCCAAAGCCGCCGAACTTGCCGCCAAGTCCTCCAAGTCCTCCCAGTCCT
CGAACCACTCTCTCGCCCTCCAGTTCATCAACTTGTGGCTCCTGTTCCGC
CTCCAATTCCAAGAGTGTCAGTGGTTCTCCATTTTCGAAATCCACAGGTA
TGGCCAGAGAGCAGGAGATCACGGCGATCAGGGCGAGACTCAGGGCAAGG
AACTTCATGTCGACTGATAACT

BS12041.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:27:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG13217-PA 342 CG13217-RA 1..342 358..17 1710 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:45:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG13217-RA 484 CG13217-RA 79..421 358..16 1715 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:44:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11236266..11236608 16..358 1715 100 Plus
Blast to na_te.dros performed on 2015-02-08 11:45:03 has no hits.

BS12041.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:40 Download gff for BS12041.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13217-PA 1..342 17..358 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:36:36 Download gff for BS12041.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13217-RA 79..423 13..358 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:41:57 Download gff for BS12041.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13217-RA 79..423 13..358 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:41:57 Download gff for BS12041.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 11236264..11236608 13..358 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:36:36 Download gff for BS12041.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7123769..7124113 13..358 99   Plus

BS12041.5prime Sequence

372 bp (372 high quality bases) assembled on 2006-06-16

> BS12041.5prime
GAAGTTATCAGTCGACATGAAGTTCCTTGCCCTGAGTCTCGCCCTGATCG
CCGTGATCTCCTGCTCTCTGGCCATACCTGTGGATTTCGAAAATGGAGAA
CCACTGACACTCTTGGAATTGGAGGCGGAACAGGAGCCACAAGTTGATGA
ACTGGAGGGCGAGAGAGTGGTTCGAGGACTGGGAGGACTTGGAGGACTTG
GCGGCAAGTTCGGCGGCTTTGGAGGACTCGGCGGCTTGAAGGGAGGATTC
GGTGGTCTTGGTCACGGCTTTGGCGGTGGTTTTGGAGGACACGGTTTCGG
CGGCGGCTTCGGTGGACTTGGCAGCTTCAAGAGCCTATTCGGCAAGAAGT
TCCGCTAAAAGCTTTCTAGACC

BS12041.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:27:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG13217-PA 342 CG13217-RA 1..342 17..358 1710 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:40:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG13217-RA 484 CG13217-RA 79..421 17..359 1715 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:40:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11236266..11236608 359..17 1715 100 Minus
Blast to na_te.dros performed on 2015-02-12 17:40:42 has no hits.

BS12041.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:41 Download gff for BS12041.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13217-PA 1..342 17..358 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:40:09 Download gff for BS12041.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13217-RA 79..423 17..362 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:48:41 Download gff for BS12041.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13217-RA 79..423 17..362 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:48:41 Download gff for BS12041.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 11236264..11236608 17..362 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:40:09 Download gff for BS12041.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7123769..7124113 17..362 99   Minus

BS12041.complete Sequence

374 bp assembled on 2006-11-01

GenBank Submission: FJ637044

> BS12041.complete
GAAGTTATCAGTCGACATGAAGTTCCTTGCCCTGAGTCTCGCCCTGATCG
CCGTGATCTCCTGCTCTCTGGCCATACCTGTGGATTTCGAAAATGGAGAA
CCACTGACACTCTTGGAATTGGAGGCGGAACAGGAGCCACAAGTTGATGA
ACTGGAGGGCGAGAGAGTGGTTCGAGGACTGGGAGGACTTGGAGGACTTG
GCGGCAAGTTCGGCGGCTTTGGAGGACTCGGCGGCTTGAAGGGAGGATTC
GGTGGTCTTGGTCACGGCTTTGGCGGTGGTTTTGGAGGACACGGTTTCGG
CGGCGGCTTCGGTGGACTTGGCAGCTTCAAGAGCCTATTCGGCAAGAAGT
TCCGCTAAAAGCTTTCTAGACCAT

BS12041.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:57:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG13217-RA 342 CG13217-PA 1..342 17..358 1710 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:57:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG13217-RA 484 CG13217-RA 79..421 17..359 1715 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:57:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11236266..11236608 359..17 1715 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:57:46 has no hits.

BS12041.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:47:03 Download gff for BS12041.complete
Subject Subject Range Query Range Percent Splice Strand
CG13217-RA 1..342 17..358 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:22:16 Download gff for BS12041.complete
Subject Subject Range Query Range Percent Splice Strand
CG13217-RA 76..420 17..362 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:54:37 Download gff for BS12041.complete
Subject Subject Range Query Range Percent Splice Strand
CG13217-RA 79..418 17..356 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:47:03 Download gff for BS12041.complete
Subject Subject Range Query Range Percent Splice Strand
CG13217-RA 76..420 17..362 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:08:12 Download gff for BS12041.complete
Subject Subject Range Query Range Percent Splice Strand
CG13217-RA 79..418 17..356 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:08:12 Download gff for BS12041.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11236269..11236608 17..356 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:54:37 Download gff for BS12041.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7123774..7124113 17..356 100   Minus

BS12041.pep Sequence

Translation from 16 to 357

> BS12041.pep
MKFLALSLALIAVISCSLAIPVDFENGEPLTLLELEAEQEPQVDELEGER
VVRGLGGLGGLGGKFGGFGGLGGLKGGFGGLGHGFGGGFGGHGFGGGFGG
LGSFKSLFGKKFR*

BS12041.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:31:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG13217-PA 113 CG13217-PA 1..113 1..113 594 100 Plus
Listericin-PA 121 CG9080-PA 3..95 2..100 157 43 Plus
CG34227-PA 104 CG34227-PA 1..99 1..100 151 38.2 Plus
CG17738-PA 110 CG17738-PA 4..106 5..100 147 38.5 Plus
CG8157-PB 113 CG8157-PB 49..94 54..100 147 63.8 Plus