Clone Sequence Records
BS12041.3prime Sequence
372 bp (372 high quality bases) assembled on 2006-06-16
> BS12041.3prime
ATGGTCTAGAAAGCTTTTAGCGGAACTTCTTGCCGAATAGGCTCTTGAAG
CTGCCAAGTCCACCGAAGCCGCCGCCGAAACCGTGTCCTCCAAAACCACC
GCCAAAGCCGTGACCAAGACCACCGAATCCTCCCTTCAAGCCGCCGAGTC
CTCCAAAGCCGCCGAACTTGCCGCCAAGTCCTCCAAGTCCTCCCAGTCCT
CGAACCACTCTCTCGCCCTCCAGTTCATCAACTTGTGGCTCCTGTTCCGC
CTCCAATTCCAAGAGTGTCAGTGGTTCTCCATTTTCGAAATCCACAGGTA
TGGCCAGAGAGCAGGAGATCACGGCGATCAGGGCGAGACTCAGGGCAAGG
AACTTCATGTCGACTGATAACT
BS12041.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:27:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13217-PA | 342 | CG13217-RA | 1..342 | 358..17 | 1710 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:45:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13217-RA | 484 | CG13217-RA | 79..421 | 358..16 | 1715 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:44:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11236266..11236608 | 16..358 | 1715 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 11:45:03 has no hits.
BS12041.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:40 Download gff for
BS12041.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13217-PA | 1..342 | 17..358 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:36:36 Download gff for
BS12041.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13217-RA | 79..423 | 13..358 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:41:57 Download gff for
BS12041.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13217-RA | 79..423 | 13..358 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:41:57 Download gff for
BS12041.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11236264..11236608 | 13..358 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:36:36 Download gff for
BS12041.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7123769..7124113 | 13..358 | 99 | | Plus |
BS12041.5prime Sequence
372 bp (372 high quality bases) assembled on 2006-06-16
> BS12041.5prime
GAAGTTATCAGTCGACATGAAGTTCCTTGCCCTGAGTCTCGCCCTGATCG
CCGTGATCTCCTGCTCTCTGGCCATACCTGTGGATTTCGAAAATGGAGAA
CCACTGACACTCTTGGAATTGGAGGCGGAACAGGAGCCACAAGTTGATGA
ACTGGAGGGCGAGAGAGTGGTTCGAGGACTGGGAGGACTTGGAGGACTTG
GCGGCAAGTTCGGCGGCTTTGGAGGACTCGGCGGCTTGAAGGGAGGATTC
GGTGGTCTTGGTCACGGCTTTGGCGGTGGTTTTGGAGGACACGGTTTCGG
CGGCGGCTTCGGTGGACTTGGCAGCTTCAAGAGCCTATTCGGCAAGAAGT
TCCGCTAAAAGCTTTCTAGACC
BS12041.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:27:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13217-PA | 342 | CG13217-RA | 1..342 | 17..358 | 1710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:40:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13217-RA | 484 | CG13217-RA | 79..421 | 17..359 | 1715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:40:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11236266..11236608 | 359..17 | 1715 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:40:42 has no hits.
BS12041.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:41 Download gff for
BS12041.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13217-PA | 1..342 | 17..358 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:40:09 Download gff for
BS12041.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13217-RA | 79..423 | 17..362 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:48:41 Download gff for
BS12041.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13217-RA | 79..423 | 17..362 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:48:41 Download gff for
BS12041.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11236264..11236608 | 17..362 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:40:09 Download gff for
BS12041.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7123769..7124113 | 17..362 | 99 | | Minus |
BS12041.complete Sequence
374 bp assembled on 2006-11-01
GenBank Submission: FJ637044
> BS12041.complete
GAAGTTATCAGTCGACATGAAGTTCCTTGCCCTGAGTCTCGCCCTGATCG
CCGTGATCTCCTGCTCTCTGGCCATACCTGTGGATTTCGAAAATGGAGAA
CCACTGACACTCTTGGAATTGGAGGCGGAACAGGAGCCACAAGTTGATGA
ACTGGAGGGCGAGAGAGTGGTTCGAGGACTGGGAGGACTTGGAGGACTTG
GCGGCAAGTTCGGCGGCTTTGGAGGACTCGGCGGCTTGAAGGGAGGATTC
GGTGGTCTTGGTCACGGCTTTGGCGGTGGTTTTGGAGGACACGGTTTCGG
CGGCGGCTTCGGTGGACTTGGCAGCTTCAAGAGCCTATTCGGCAAGAAGT
TCCGCTAAAAGCTTTCTAGACCAT
BS12041.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:57:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13217-RA | 342 | CG13217-PA | 1..342 | 17..358 | 1710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:57:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13217-RA | 484 | CG13217-RA | 79..421 | 17..359 | 1715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:57:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11236266..11236608 | 359..17 | 1715 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:57:46 has no hits.
BS12041.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:47:03 Download gff for
BS12041.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13217-RA | 1..342 | 17..358 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:22:16 Download gff for
BS12041.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13217-RA | 76..420 | 17..362 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:54:37 Download gff for
BS12041.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13217-RA | 79..418 | 17..356 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:47:03 Download gff for
BS12041.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13217-RA | 76..420 | 17..362 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:08:12 Download gff for
BS12041.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13217-RA | 79..418 | 17..356 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:08:12 Download gff for
BS12041.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11236269..11236608 | 17..356 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:54:37 Download gff for
BS12041.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7123774..7124113 | 17..356 | 100 | | Minus |
BS12041.pep Sequence
Translation from 16 to 357
> BS12041.pep
MKFLALSLALIAVISCSLAIPVDFENGEPLTLLELEAEQEPQVDELEGER
VVRGLGGLGGLGGKFGGFGGLGGLKGGFGGLGHGFGGGFGGHGFGGGFGG
LGSFKSLFGKKFR*
BS12041.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:31:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13217-PA | 113 | CG13217-PA | 1..113 | 1..113 | 594 | 100 | Plus |
Listericin-PA | 121 | CG9080-PA | 3..95 | 2..100 | 157 | 43 | Plus |
CG34227-PA | 104 | CG34227-PA | 1..99 | 1..100 | 151 | 38.2 | Plus |
CG17738-PA | 110 | CG17738-PA | 4..106 | 5..100 | 147 | 38.5 | Plus |
CG8157-PB | 113 | CG8157-PB | 49..94 | 54..100 | 147 | 63.8 | Plus |