BS12042.complete Sequence
1544 bp assembled on 2006-11-01
GenBank Submission: FJ637045
> BS12042.complete
GAAGTTATCAGTCGACATGACGGCAATAATACTCCTGGCTTGCCACTCGG
TTCGCGAACTCGTCGATCTGTCAGATGCTCTGTGGCAGAACACTTTTAAT
ATCGAACGAAGTTTAAACTATTATCGCATCAAGCGCCGTTTGGAACTGTT
TCGATTTCATTGCCGCGAGCTTTGGTTGCGTCAGGTGTCAAAAACATCCG
ATCCAATGCATCGGAAGGCAGGCATAGATTTTGCAGCCATTGAGGCGGGT
GCAGACTGTGTCCTAAATATGGATGCCTTTGACGATACGACAACGGAACT
ACACAAGAGGTTTTTACAGGCGGAGGGCACAAGACCCTTTCCTTCGGATT
GCATCAGCGGCATCGAGGTGGTGGATGGAAATGAATTTAAAGCCTCATTT
TACGAATATGCAGATGCTGTGCCAAAATATTTTAACGACCAAATAGGGAA
ATTGAGCGAAGGGATAAGTTTCACGGTGACTGGGAATCTCTCTGTAAACT
GCGAGAGGTTTTCCATCAATCTGGTTTATAACAATGACTCTCGAGATGTG
GCGCTCCACATTAATCCACGGTTGCCACAAAACTATATTGTCCGCAACAC
CAAAGTACAGGACATTTGGGGAAACGAGGAAGTGTCCTCGGCATTGCCGT
TTCTACTAAGTCGAGGCGAGGAGTTTTCCATTCAAGTGCTAGTTACTGAG
GCATGCTATATGATATCGGTAAACGGACAACACTTTGCAGCGTACACTCA
TCGAATCCCTTATAGGGATGTTCGCATTCTGGAAGTGAAGGGAGATGTAA
GTAACGTGGAAATGAAGCGAACTTTGGTCTTAAAATATCCTGAGCGATTA
CCCCAGTCAGAGGCTAATAACATTGAGCTTCACATAGATGATGGGATTAA
TGAAATTGATGCCAGCGTTGAGGAGACTGTTAAAATACCTCATGAGTGGT
GCATTATTAGCGCCCCGAACACACAGTCGGACAGTTCGCCTAAGCGTAAC
AATAGTTCGAATGATCTTGGCCTTACTTTGCCTTATTATGGAGCATTGCC
ACCAAATTCGTTGGTCGATGGTCGATGCTTGAAGATTGAAGGGAGAGTGC
GATTACTTCCCCACTCGTTTTATATAAACCTGCAACAGGGGCAGGACATA
TGGCCACATCCAGTAATTGCATTCCACTTAAACCCACGTTTTTCGAAAGC
AAGCAGCGGCGCTATTGGAAAGGCGGTGGTGTGTAGGAATGCCTGGCTTA
ATGGAGCTTGGGCACAAGAAGAGCGTTCGGAGTTTGACACAAACTTTCGC
CCTGGTCGGTCTTTTTGTTTAGCCATTGTTTGTACCAAAACATCCTTTGA
GGTGTATGTCAATCGGCAGTTTATGACTGATTTTAAATATAAGGTTAGCC
CTGAGGTGGTGGACACTGTCTACATACAAGGAGATGTTAAACTTTGGAAT
GTAACGCTGGAAAAAAATCAGATGATTAAAGGCAAAAATATGCGAGTCTA
TCAGAATCCGTGGTTCTTTAGTGAGTAGAAGCTTTCTAGACCAT
BS12042.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:57:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| galectin-RA | 1512 | CG11372-PA | 1..1512 | 17..1528 | 7560 | 100 | Plus |
| galectin-RE | 1260 | CG11372-PE | 1..1260 | 269..1528 | 6090 | 98.9 | Plus |
| galectin-RD | 1206 | CG11372-PD | 70..1206 | 392..1528 | 5685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:57:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| galectin-RA | 1841 | CG11372-RA | 217..1733 | 17..1533 | 7570 | 99.9 | Plus |
| galectin-RE | 1458 | CG11372-RE | 21..1350 | 204..1533 | 6275 | 98.1 | Plus |
| galectin-RF | 1536 | CG11372-RF | 287..1428 | 392..1533 | 5695 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:57:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 75076..76103 | 506..1533 | 5125 | 99.9 | Plus |
| 2L | 23513712 | 2L | 72603..72978 | 17..392 | 1880 | 100 | Plus |
| 2L | 23513712 | 2L | 74903..75020 | 392..509 | 590 | 100 | Plus |
| 2L | 23513712 | 2L | 73505..73693 | 204..392 | 585 | 87.3 | Plus |
| 2L | 23513712 | 2L | 73410..73470 | 56..116 | 185 | 86.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 12:57:53 has no hits.
BS12042.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:47:05 Download gff for
BS12042.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| galectin-RA | 1..1512 | 17..1528 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:22:17 Download gff for
BS12042.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| galectin-RA | 207..1736 | 7..1536 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:25:50 Download gff for
BS12042.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| galectin-RA | 217..1728 | 17..1528 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:47:05 Download gff for
BS12042.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| galectin-RA | 207..1736 | 7..1536 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:08:13 Download gff for
BS12042.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| galectin-RA | 217..1728 | 17..1528 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:08:13 Download gff for
BS12042.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 72603..72977 | 17..391 | 100 | -> | Plus |
| 2L | 74903..75018 | 392..507 | 100 | -> | Plus |
| 2L | 75078..76098 | 508..1528 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:25:50 Download gff for
BS12042.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 72603..72977 | 17..391 | 100 | -> | Plus |
| arm_2L | 74903..75018 | 392..507 | 100 | -> | Plus |
| arm_2L | 75078..76098 | 508..1528 | 100 | | Plus |
BS12042.pep Sequence
Translation from 16 to 1527
> BS12042.pep
MTAIILLACHSVRELVDLSDALWQNTFNIERSLNYYRIKRRLELFRFHCR
ELWLRQVSKTSDPMHRKAGIDFAAIEAGADCVLNMDAFDDTTTELHKRFL
QAEGTRPFPSDCISGIEVVDGNEFKASFYEYADAVPKYFNDQIGKLSEGI
SFTVTGNLSVNCERFSINLVYNNDSRDVALHINPRLPQNYIVRNTKVQDI
WGNEEVSSALPFLLSRGEEFSIQVLVTEACYMISVNGQHFAAYTHRIPYR
DVRILEVKGDVSNVEMKRTLVLKYPERLPQSEANNIELHIDDGINEIDAS
VEETVKIPHEWCIISAPNTQSDSSPKRNNSSNDLGLTLPYYGALPPNSLV
DGRCLKIEGRVRLLPHSFYINLQQGQDIWPHPVIAFHLNPRFSKASSGAI
GKAVVCRNAWLNGAWAQEERSEFDTNFRPGRSFCLAIVCTKTSFEVYVNR
QFMTDFKYKVSPEVVDTVYIQGDVKLWNVTLEKNQMIKGKNMRVYQNPWF
FSE*
BS12042.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:31:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| galectin-PA | 503 | CG11372-PA | 1..503 | 1..503 | 2664 | 100 | Plus |
| galectin-PE | 419 | CG11372-PE | 1..419 | 85..503 | 2150 | 97.1 | Plus |
| galectin-PB | 402 | CG11372-PB | 24..402 | 125..503 | 2006 | 99.7 | Plus |
| galectin-PD | 401 | CG11372-PD | 24..401 | 126..503 | 2005 | 100 | Plus |
| galectin-PF | 272 | CG11372-PF | 1..272 | 232..503 | 1454 | 100 | Plus |
