Clone Sequence Records
BS12043.3prime Sequence
714 bp (714 high quality bases) assembled on 2006-06-16
> BS12043.3prime
ATGGTCTAGAAAGCTTTTAAATTCCGATCTGCTGGGCCAGACCCGAATAG
ATGTGCAGCGTGCAGAATCCAATGACGGCCGCCACCAGCGCTTTAACAGC
CACCGTTAGCCAAGGTCCAATGGTCAGAATGTGGAGCATGCCCTCCAGCC
AGACGCCTTTGAAGACAGTCACCGCCAGAAGTAGACTAACCAGCGGCTTT
AATGCCTTGTTCAAATCGTGACGGGTGAAGAGCCAGATCAGGGTGGCCGT
AGTGATGTGCTGCACCAGAAGCACGTTCGATTCCAGACACTTGAGGATGT
AGATCCAACTGAACTCGGTGCCTCGGGCACCCACCCACAGCATGATACCT
CGGGAAAGAATCACTTCGGCGGTGGCCCATCCAAGTCCAGCCGTTATGAG
CTTTGAGTGGCCCTTGCCGGGTATGCGACTCAAGATTAGGGCGAATCCAA
GCAGATCGGCGATGTCCATGCTGCAGCGAAGAATCTCCGCAAAGAAGTTG
AACTCGCCGCTGGAGGATGGAGCGTCCGAGTAGAAGAATGTGGCCAGCAC
CAGCATCTTGACGAGCTGTGTGAATATATAAATGCCTCCCGCCTGCACGC
ACTTCCAGAAGGCTCCATATTCTGATAGGCCGGAGTATTTATAGGTGAAG
TAGTACGGCGTCAGCAGGGCCACACAATTTCCAAAGTGATACAGTGTCAT
GTCGACTGATAACT
BS12043.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:27:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5861-PA | 684 | CG5861-RA | 1..684 | 700..17 | 3420 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:03:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5861-RA | 1126 | CG5861-RA | 285..968 | 700..17 | 3420 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:03:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16305959..16306320 | 17..378 | 1810 | 100 | Plus |
2L | 23513712 | 2L | 16306693..16306832 | 487..626 | 700 | 100 | Plus |
2L | 23513712 | 2L | 16306514..16306624 | 378..488 | 555 | 100 | Plus |
2L | 23513712 | 2L | 16306941..16307014 | 627..700 | 370 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:03:37 has no hits.
BS12043.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:41 Download gff for
BS12043.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5861-PA | 1..684 | 17..700 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:43:32 Download gff for
BS12043.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5861-RA | 280..970 | 13..707 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:17:01 Download gff for
BS12043.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5861-RA | 280..970 | 13..707 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:17:01 Download gff for
BS12043.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16306515..16306623 | 379..487 | 100 | <- | Plus |
2L | 16306694..16306832 | 488..626 | 100 | <- | Plus |
2L | 16306941..16307019 | 627..707 | 95 | | Plus |
2L | 16305957..16306320 | 13..378 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:43:32 Download gff for
BS12043.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16305957..16306320 | 13..378 | 99 | <- | Plus |
arm_2L | 16306515..16306623 | 379..487 | 100 | <- | Plus |
arm_2L | 16306694..16306832 | 488..626 | 100 | <- | Plus |
arm_2L | 16306941..16307019 | 627..707 | 95 | | Plus |
BS12043.5prime Sequence
715 bp (715 high quality bases) assembled on 2006-06-16
> BS12043.5prime
GAAGTTATCAGTCGACATGACACTGTATCACTTTGGAAATTGTGTGGCCC
TGCTGACGCCGTACTACTTCACCTATAAATACTCCGGCCTATCAGAATAT
GGAGCCTTCTGGAAGTGCGTGCAGGCGGGAGGCATTTATATATTCACACA
GCTCGTCAAGATGCTGGTGCTGGCCACATTCTTCTACTCGGACGCTCCAT
CCTCCAGCGGCGAGTTCAACTTCTTTGCGGAGATTCTTCGCTGCAGCATG
GACATCGCCGATCTGCTTGGATTCGCCCTAATCTTGAGTCGCATACCCGG
CAAGGGCCACTCAAAGCTCATAACGGCTGGACTTGGATGGGCCACCGCCG
AAGTGATTCTTTCCCGAGGTATCATGCTGTGGGTGGGTGCCCGAGGCACC
GAGTTCAGTTGGATCTACATCCTCAAGTGTCTGGAATCGAACGTGCTTCT
GGTGCAGCACATCACTACGGCCACCCTGATCTGGCTCTTCACCCGTCACG
ATTTGAACAAGGCATTAAAGCCGCTGGTTAGTCTACTTCTGGCGGTGACT
GTCTTCAAAGGCGTCTGGCTGGAGGGCATGCTCCACATTCTGACCATTGG
ACCTTGGCTAACGGTGGCTGTTAAAGCGCTGGTGGCGGCCGTCATTGGAT
TCTGCACGCTGCACATCTATTCGGGTCTGGCCCAGCAGATCGGAATTTAA
AAAGCTTTCTAGACC
BS12043.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:27:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5861-PA | 684 | CG5861-RA | 1..684 | 17..700 | 3420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:33:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5861-RA | 1126 | CG5861-RA | 285..968 | 17..700 | 3420 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:33:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16305959..16306320 | 700..339 | 1810 | 100 | Minus |
2L | 23513712 | 2L | 16306693..16306832 | 230..91 | 700 | 100 | Minus |
2L | 23513712 | 2L | 16306514..16306624 | 339..229 | 555 | 100 | Minus |
2L | 23513712 | 2L | 16306941..16307014 | 90..17 | 370 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:33:32 has no hits.
BS12043.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:42 Download gff for
BS12043.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5861-PA | 1..684 | 17..700 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:17:44 Download gff for
BS12043.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5861-RA | 280..968 | 10..700 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:02:54 Download gff for
BS12043.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5861-RA | 280..968 | 10..700 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:02:54 Download gff for
BS12043.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16306515..16306623 | 230..338 | 100 | <- | Minus |
2L | 16306694..16306832 | 91..229 | 100 | <- | Minus |
2L | 16306941..16307019 | 10..90 | 95 | | Minus |
2L | 16305959..16306320 | 339..700 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:17:44 Download gff for
BS12043.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16305959..16306320 | 339..700 | 100 | <- | Minus |
arm_2L | 16306515..16306623 | 230..338 | 100 | <- | Minus |
arm_2L | 16306694..16306832 | 91..229 | 100 | <- | Minus |
arm_2L | 16306941..16307019 | 10..90 | 95 | | Minus |
BS12043.complete Sequence
716 bp assembled on 2006-11-01
GenBank Submission: FJ637046
> BS12043.complete
GAAGTTATCAGTCGACATGACACTGTATCACTTTGGAAATTGTGTGGCCC
TGCTGACGCCGTACTACTTCACCTATAAATACTCCGGCCTATCAGAATAT
GGAGCCTTCTGGAAGTGCGTGCAGGCGGGAGGCATTTATATATTCACACA
GCTCGTCAAGATGCTGGTGCTGGCCACATTCTTCTACTCGGACGCTCCAT
CCTCCAGCGGCGAGTTCAACTTCTTTGCGGAGATTCTTCGCTGCAGCATG
GACATCGCCGATCTGCTTGGATTCGCCCTAATCTTGAGTCGCATACCCGG
CAAGGGCCACTCAAAGCTCATAACGGCTGGACTTGGATGGGCCACCGCCG
AAGTGATTCTTTCCCGAGGTATCATGCTGTGGGTGGGTGCCCGAGGCACC
GAGTTCAGTTGGATCTACATCCTCAAGTGTCTGGAATCGAACGTGCTTCT
GGTGCAGCACATCACTACGGCCACCCTGATCTGGCTCTTCACCCGTCACG
ATTTGAACAAGGCATTAAAGCCGCTGGTTAGTCTACTTCTGGCGGTGACT
GTCTTCAAAGGCGTCTGGCTGGAGGGCATGCTCCACATTCTGACCATTGG
ACCTTGGCTAACGGTGGCTGTTAAAGCGCTGGTGGCGGCCGTCATTGGAT
TCTGCACGCTGCACATCTATTCGGGTCTGGCCCAGCAGATCGGAATTTAA
AAGCTTTCTAGACCAT
BS12043.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:52:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5861-RA | 684 | CG5861-PA | 1..684 | 17..700 | 3420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:52:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5861-RA | 1126 | CG5861-RA | 285..968 | 17..700 | 3420 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:52:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16305959..16306320 | 700..339 | 1810 | 100 | Minus |
2L | 23513712 | 2L | 16306693..16306832 | 230..91 | 700 | 100 | Minus |
2L | 23513712 | 2L | 16306514..16306624 | 339..229 | 555 | 100 | Minus |
2L | 23513712 | 2L | 16306941..16307014 | 90..17 | 370 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:52:50 has no hits.
BS12043.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:47:06 Download gff for
BS12043.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5861-RA | 1..684 | 17..700 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:22:19 Download gff for
BS12043.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5861-RA | 257..947 | 10..704 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:04:01 Download gff for
BS12043.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5861-RA | 285..966 | 17..698 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:47:06 Download gff for
BS12043.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5861-RA | 257..947 | 10..704 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:33:32 Download gff for
BS12043.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5861-RA | 285..966 | 17..698 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:33:32 Download gff for
BS12043.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16305961..16306320 | 339..698 | 100 | <- | Minus |
2L | 16306515..16306623 | 230..338 | 100 | <- | Minus |
2L | 16306694..16306832 | 91..229 | 100 | <- | Minus |
2L | 16306941..16307014 | 17..90 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:04:01 Download gff for
BS12043.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16305961..16306320 | 339..698 | 100 | <- | Minus |
arm_2L | 16306515..16306623 | 230..338 | 100 | <- | Minus |
arm_2L | 16306694..16306832 | 91..229 | 100 | <- | Minus |
arm_2L | 16306941..16307014 | 17..90 | 100 | | Minus |
BS12043.pep Sequence
Translation from 16 to 699
> BS12043.pep
MTLYHFGNCVALLTPYYFTYKYSGLSEYGAFWKCVQAGGIYIFTQLVKML
VLATFFYSDAPSSSGEFNFFAEILRCSMDIADLLGFALILSRIPGKGHSK
LITAGLGWATAEVILSRGIMLWVGARGTEFSWIYILKCLESNVLLVQHIT
TATLIWLFTRHDLNKALKPLVSLLLAVTVFKGVWLEGMLHILTIGPWLTV
AVKALVAAVIGFCTLHIYSGLAQQIGI*
BS12043.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:31:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5861-PA | 227 | CG5861-PA | 1..227 | 1..227 | 1183 | 100 | Plus |