Clone BS12043 Report

Search the DGRC for BS12043

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:120
Well:43
Vector:pDNR-Dual
Associated Gene/TranscriptCG5861-RA
Protein status:BS12043.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12043.3prime Sequence

714 bp (714 high quality bases) assembled on 2006-06-16

> BS12043.3prime
ATGGTCTAGAAAGCTTTTAAATTCCGATCTGCTGGGCCAGACCCGAATAG
ATGTGCAGCGTGCAGAATCCAATGACGGCCGCCACCAGCGCTTTAACAGC
CACCGTTAGCCAAGGTCCAATGGTCAGAATGTGGAGCATGCCCTCCAGCC
AGACGCCTTTGAAGACAGTCACCGCCAGAAGTAGACTAACCAGCGGCTTT
AATGCCTTGTTCAAATCGTGACGGGTGAAGAGCCAGATCAGGGTGGCCGT
AGTGATGTGCTGCACCAGAAGCACGTTCGATTCCAGACACTTGAGGATGT
AGATCCAACTGAACTCGGTGCCTCGGGCACCCACCCACAGCATGATACCT
CGGGAAAGAATCACTTCGGCGGTGGCCCATCCAAGTCCAGCCGTTATGAG
CTTTGAGTGGCCCTTGCCGGGTATGCGACTCAAGATTAGGGCGAATCCAA
GCAGATCGGCGATGTCCATGCTGCAGCGAAGAATCTCCGCAAAGAAGTTG
AACTCGCCGCTGGAGGATGGAGCGTCCGAGTAGAAGAATGTGGCCAGCAC
CAGCATCTTGACGAGCTGTGTGAATATATAAATGCCTCCCGCCTGCACGC
ACTTCCAGAAGGCTCCATATTCTGATAGGCCGGAGTATTTATAGGTGAAG
TAGTACGGCGTCAGCAGGGCCACACAATTTCCAAAGTGATACAGTGTCAT
GTCGACTGATAACT

BS12043.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:27:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG5861-PA 684 CG5861-RA 1..684 700..17 3420 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:03:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG5861-RA 1126 CG5861-RA 285..968 700..17 3420 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:03:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16305959..16306320 17..378 1810 100 Plus
2L 23513712 2L 16306693..16306832 487..626 700 100 Plus
2L 23513712 2L 16306514..16306624 378..488 555 100 Plus
2L 23513712 2L 16306941..16307014 627..700 370 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:03:37 has no hits.

BS12043.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:41 Download gff for BS12043.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5861-PA 1..684 17..700 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:43:32 Download gff for BS12043.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5861-RA 280..970 13..707 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:17:01 Download gff for BS12043.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5861-RA 280..970 13..707 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:17:01 Download gff for BS12043.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 16306515..16306623 379..487 100 <- Plus
2L 16306694..16306832 488..626 100 <- Plus
2L 16306941..16307019 627..707 95   Plus
2L 16305957..16306320 13..378 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:43:32 Download gff for BS12043.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16305957..16306320 13..378 99 <- Plus
arm_2L 16306515..16306623 379..487 100 <- Plus
arm_2L 16306694..16306832 488..626 100 <- Plus
arm_2L 16306941..16307019 627..707 95   Plus

BS12043.5prime Sequence

715 bp (715 high quality bases) assembled on 2006-06-16

> BS12043.5prime
GAAGTTATCAGTCGACATGACACTGTATCACTTTGGAAATTGTGTGGCCC
TGCTGACGCCGTACTACTTCACCTATAAATACTCCGGCCTATCAGAATAT
GGAGCCTTCTGGAAGTGCGTGCAGGCGGGAGGCATTTATATATTCACACA
GCTCGTCAAGATGCTGGTGCTGGCCACATTCTTCTACTCGGACGCTCCAT
CCTCCAGCGGCGAGTTCAACTTCTTTGCGGAGATTCTTCGCTGCAGCATG
GACATCGCCGATCTGCTTGGATTCGCCCTAATCTTGAGTCGCATACCCGG
CAAGGGCCACTCAAAGCTCATAACGGCTGGACTTGGATGGGCCACCGCCG
AAGTGATTCTTTCCCGAGGTATCATGCTGTGGGTGGGTGCCCGAGGCACC
GAGTTCAGTTGGATCTACATCCTCAAGTGTCTGGAATCGAACGTGCTTCT
GGTGCAGCACATCACTACGGCCACCCTGATCTGGCTCTTCACCCGTCACG
ATTTGAACAAGGCATTAAAGCCGCTGGTTAGTCTACTTCTGGCGGTGACT
GTCTTCAAAGGCGTCTGGCTGGAGGGCATGCTCCACATTCTGACCATTGG
ACCTTGGCTAACGGTGGCTGTTAAAGCGCTGGTGGCGGCCGTCATTGGAT
TCTGCACGCTGCACATCTATTCGGGTCTGGCCCAGCAGATCGGAATTTAA
AAAGCTTTCTAGACC

BS12043.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:27:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG5861-PA 684 CG5861-RA 1..684 17..700 3420 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:33:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG5861-RA 1126 CG5861-RA 285..968 17..700 3420 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:33:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16305959..16306320 700..339 1810 100 Minus
2L 23513712 2L 16306693..16306832 230..91 700 100 Minus
2L 23513712 2L 16306514..16306624 339..229 555 100 Minus
2L 23513712 2L 16306941..16307014 90..17 370 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:33:32 has no hits.

BS12043.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:42 Download gff for BS12043.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5861-PA 1..684 17..700 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:17:44 Download gff for BS12043.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5861-RA 280..968 10..700 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:02:54 Download gff for BS12043.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5861-RA 280..968 10..700 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:02:54 Download gff for BS12043.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 16306515..16306623 230..338 100 <- Minus
2L 16306694..16306832 91..229 100 <- Minus
2L 16306941..16307019 10..90 95   Minus
2L 16305959..16306320 339..700 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:17:44 Download gff for BS12043.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16305959..16306320 339..700 100 <- Minus
arm_2L 16306515..16306623 230..338 100 <- Minus
arm_2L 16306694..16306832 91..229 100 <- Minus
arm_2L 16306941..16307019 10..90 95   Minus

BS12043.complete Sequence

716 bp assembled on 2006-11-01

GenBank Submission: FJ637046

> BS12043.complete
GAAGTTATCAGTCGACATGACACTGTATCACTTTGGAAATTGTGTGGCCC
TGCTGACGCCGTACTACTTCACCTATAAATACTCCGGCCTATCAGAATAT
GGAGCCTTCTGGAAGTGCGTGCAGGCGGGAGGCATTTATATATTCACACA
GCTCGTCAAGATGCTGGTGCTGGCCACATTCTTCTACTCGGACGCTCCAT
CCTCCAGCGGCGAGTTCAACTTCTTTGCGGAGATTCTTCGCTGCAGCATG
GACATCGCCGATCTGCTTGGATTCGCCCTAATCTTGAGTCGCATACCCGG
CAAGGGCCACTCAAAGCTCATAACGGCTGGACTTGGATGGGCCACCGCCG
AAGTGATTCTTTCCCGAGGTATCATGCTGTGGGTGGGTGCCCGAGGCACC
GAGTTCAGTTGGATCTACATCCTCAAGTGTCTGGAATCGAACGTGCTTCT
GGTGCAGCACATCACTACGGCCACCCTGATCTGGCTCTTCACCCGTCACG
ATTTGAACAAGGCATTAAAGCCGCTGGTTAGTCTACTTCTGGCGGTGACT
GTCTTCAAAGGCGTCTGGCTGGAGGGCATGCTCCACATTCTGACCATTGG
ACCTTGGCTAACGGTGGCTGTTAAAGCGCTGGTGGCGGCCGTCATTGGAT
TCTGCACGCTGCACATCTATTCGGGTCTGGCCCAGCAGATCGGAATTTAA
AAGCTTTCTAGACCAT

BS12043.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:52:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG5861-RA 684 CG5861-PA 1..684 17..700 3420 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:52:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG5861-RA 1126 CG5861-RA 285..968 17..700 3420 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:52:49
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16305959..16306320 700..339 1810 100 Minus
2L 23513712 2L 16306693..16306832 230..91 700 100 Minus
2L 23513712 2L 16306514..16306624 339..229 555 100 Minus
2L 23513712 2L 16306941..16307014 90..17 370 100 Minus
Blast to na_te.dros performed on 2014-11-27 01:52:50 has no hits.

BS12043.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:47:06 Download gff for BS12043.complete
Subject Subject Range Query Range Percent Splice Strand
CG5861-RA 1..684 17..700 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:22:19 Download gff for BS12043.complete
Subject Subject Range Query Range Percent Splice Strand
CG5861-RA 257..947 10..704 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:04:01 Download gff for BS12043.complete
Subject Subject Range Query Range Percent Splice Strand
CG5861-RA 285..966 17..698 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:47:06 Download gff for BS12043.complete
Subject Subject Range Query Range Percent Splice Strand
CG5861-RA 257..947 10..704 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:33:32 Download gff for BS12043.complete
Subject Subject Range Query Range Percent Splice Strand
CG5861-RA 285..966 17..698 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:33:32 Download gff for BS12043.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16305961..16306320 339..698 100 <- Minus
2L 16306515..16306623 230..338 100 <- Minus
2L 16306694..16306832 91..229 100 <- Minus
2L 16306941..16307014 17..90 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:04:01 Download gff for BS12043.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16305961..16306320 339..698 100 <- Minus
arm_2L 16306515..16306623 230..338 100 <- Minus
arm_2L 16306694..16306832 91..229 100 <- Minus
arm_2L 16306941..16307014 17..90 100   Minus

BS12043.pep Sequence

Translation from 16 to 699

> BS12043.pep
MTLYHFGNCVALLTPYYFTYKYSGLSEYGAFWKCVQAGGIYIFTQLVKML
VLATFFYSDAPSSSGEFNFFAEILRCSMDIADLLGFALILSRIPGKGHSK
LITAGLGWATAEVILSRGIMLWVGARGTEFSWIYILKCLESNVLLVQHIT
TATLIWLFTRHDLNKALKPLVSLLLAVTVFKGVWLEGMLHILTIGPWLTV
AVKALVAAVIGFCTLHIYSGLAQQIGI*

BS12043.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:31:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG5861-PA 227 CG5861-PA 1..227 1..227 1183 100 Plus