Clone BS12046 Report

Search the DGRC for BS12046

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:120
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptRbf2-RA
Protein status:BS12046.pep: full length peptide match
Sequenced Size:2384

Clone Sequence Records

BS12046.complete Sequence

2384 bp assembled on 2009-12-07

GenBank Submission: KX805595

> BS12046.complete
GAAGTTATCAGTCGACATGGAGACTTGTGAAGTGGAGGGAGAGGCGGAGA
CGCTGGTGAGACGCTTCTCCGTCAGCTGCGAGCAATTGGAGCTGGAAGCG
AGAATTCAGCAAAGCGCTCTGTCCACCTACCATCGCTTGGATGCGGTCAA
CGGGCTGTCCACCAGCGAGGCAGATGCCCAGGAGTGGCTGTGTTGCGCCG
TCTACAGCGAACTGCAGCGCTCGAAGATGCGCGATATTAGGGAGTCCATC
AACGAGGCAAACGATTCGGTGGCCAAGAACTGCTGCTGGAACGTGTCACT
AACCCGTCTGCTGCGCAGCTTTAAGATGAACGTGTCCCAGTTTCTACGCC
GCATGGAGCACTGGAATTGGCTGACCCAAAACGAGAACACTTTCCAGCTG
GAGGTTGAGGAACTGCGTTGTCGACTTGGTATTACTTCGACGCTGCTGCG
GCATTATAAGCACATCTTTCGGAGCCTGTTCGTTCACCCCGGCAAGGGTG
CGGACCCGGGTGCCGCGAATCACTACCAAGCGCTGTATGAGTTCGGTTGG
TTGCTCTTCCTGGTCATTCGCAACGAGTTACCCGGTTTTGCGATTACAAA
CCTGATCAACGGCTGTCAGGTGCTCGTTTGCACAATGGATCTCCTTTTCG
TGAACGCCTTAGAGGTGCCCCGATCCGTAGTTATCCGCCGGGAGTTCTCT
GGAGTGCCCAAGAATTGGGACACCGAAGACTTCAATCCTATTTTGCTAAA
TAAATATAGCGTGCTAGAAGCACTGGGAGAACTGATTCCCGAGCTACCAG
CGAAGGGAGTGGTGCAAATGAAGAACGCCTTTTTCCACAAAGCCTTAATA
ATGCTCTATATGGACCATAGTCTAGTTGGAGACGACACCCATATGCGGGA
GATCATTAAGGAGGGTATGCTAGATATCAATCTGGAAAACTTAAATCGCA
AATACACCAATCAAGTAGCCGACATTAGTGAGATGGACGAGCGTGTGCTG
CTCAGCGTCCAGGGGGCGATAGAGACCAAAGGGGACTCTCCTAAAAGCCC
ACAGCTCGCCTTCCAAACAAGCTCGTCACCTTCGCATAGGAAGCTGTCCA
CCCATGATCTACCAGCAAGTCTTCCCCTAAGCATTATAAAAGCATTCCCC
AAGAAGGAAGACGCAGATAAAATTGTAAATTATTTAGATCAAACTCTGGA
AGAAATGAATCGGACCTTTACCATGGCCGTGAAAGATTTTTTGGATGCTG
AGTTGTCTGGAAAACGATTCCGCCAGGCCAGAGGCCTTTACTACAAATAT
TTGCAGAAAATTTTGGGACCGGAGCTGGTTCAAAAACCACAGCTGAAGAT
TGGTCAGTTAATGAAGCAGCGCAAGCTTACCGCCGCCCTGTTAGCTTGCT
GCCTGGAACTGGCACTTCACGTCCACCACAAACTAGTGGAAGGCCTAAGG
TTTCCCTTTGTCCTGCACTGCTTTTCACTGGACGCCTACGACTTTCAAAA
GATTCTAGAGTTGGTGGTGCGCTACGATCATGGTTTTCTGGGCAGAGAGC
TGATCAAGCACCTGGATGTGGTGGAGGAAATGTGCCTGGACTCGTTGATT
TTCCGCAAGAGCTCACAGCTGTGGTGGGAGCTAAATCAAAGACTTCCCCG
CTACAAGGAAGTCGATGCAGAAACAGAAGACAAGGAGAACTTTTCAACAG
GCTCAAGCATCTGCCTTCGAAAGTTCTACGGACTGGCCAACCGGCGGCTG
CTCCTTCTGTGTAAGAGTCTTTGCCTCGTGGATTCCTTTCCCCAAATATG
GCACCTGGCCGAGCACTCTTTCACCTTAGAGAGTAGCCGTCTGCTCCGCA
ATCGACACCTGGACCAACTGCTGTTGTGCGCCATACATCTTCATGTTCGG
CTCGAGAAGCTTCACCTCACTTTCAGCATGATTATCCAGCACTATCGCCG
ACAGCCGCACTTTCGGAGAAGCGCTTACCGAGAGGTTAGCTTGGGCAATG
GTCAGACCGCTGATATTATCACTTTCTACAACAGTGTGTATGTCCAAAGT
ATGGGCAACTATGGCCGCCACCTGGAGTGTGCGCAAACACGCAAGTCACT
GGAAGAATCACAGAGTAACGTTGGTATTCTGACGGAAACAACTTCCAACG
AATTGAGCATGAGAGCCAACATCAGCATATCTTCACCGCCCCCTCCCAGG
GTATGCCAAAGTGGCTCCTGCTCCAGTCATCCACCTTCATCTCCCGCCGC
ATCACCACTTTCCTTGCAAAGCTCGCCCAACGTAAAGCGTGCTGCTTCGA
GTAACGACTTGATGAGAGAGATCAAGCGACCAAACATCCTGCGGCGTCGC
CAGCTTTCAGTGATCTAAAAGCTTTCTAGACCAT

BS12046.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:05:21
Subject Length Description Subject Range Query Range Score Percent Strand
Rbf2-RA 2352 CG5083-PA 1..2352 17..2368 11760 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:05:22
Subject Length Description Subject Range Query Range Score Percent Strand
Rbf2-RA 2693 CG5083-RA 161..2512 17..2368 11760 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:05:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15965606..15967957 17..2368 11760 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:05:20 has no hits.

BS12046.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:45:28 Download gff for BS12046.complete
Subject Subject Range Query Range Percent Splice Strand
Rbf2-RA 156..2505 17..2366 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:05:36 Download gff for BS12046.complete
Subject Subject Range Query Range Percent Splice Strand
Rbf2-RA 156..2505 17..2366 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:15:48 Download gff for BS12046.complete
Subject Subject Range Query Range Percent Splice Strand
Rbf2-RA 156..2505 17..2366 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:03:44 Download gff for BS12046.complete
Subject Subject Range Query Range Percent Splice Strand
Rbf2-RA 161..2510 17..2366 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:03:44 Download gff for BS12046.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15965606..15967955 17..2366 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:05:36 Download gff for BS12046.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11791328..11793677 17..2366 100   Plus

BS12046.pep Sequence

Translation from 16 to 2367

> BS12046.pep
METCEVEGEAETLVRRFSVSCEQLELEARIQQSALSTYHRLDAVNGLSTS
EADAQEWLCCAVYSELQRSKMRDIRESINEANDSVAKNCCWNVSLTRLLR
SFKMNVSQFLRRMEHWNWLTQNENTFQLEVEELRCRLGITSTLLRHYKHI
FRSLFVHPGKGADPGAANHYQALYEFGWLLFLVIRNELPGFAITNLINGC
QVLVCTMDLLFVNALEVPRSVVIRREFSGVPKNWDTEDFNPILLNKYSVL
EALGELIPELPAKGVVQMKNAFFHKALIMLYMDHSLVGDDTHMREIIKEG
MLDINLENLNRKYTNQVADISEMDERVLLSVQGAIETKGDSPKSPQLAFQ
TSSSPSHRKLSTHDLPASLPLSIIKAFPKKEDADKIVNYLDQTLEEMNRT
FTMAVKDFLDAELSGKRFRQARGLYYKYLQKILGPELVQKPQLKIGQLMK
QRKLTAALLACCLELALHVHHKLVEGLRFPFVLHCFSLDAYDFQKILELV
VRYDHGFLGRELIKHLDVVEEMCLDSLIFRKSSQLWWELNQRLPRYKEVD
AETEDKENFSTGSSICLRKFYGLANRRLLLLCKSLCLVDSFPQIWHLAEH
SFTLESSRLLRNRHLDQLLLCAIHLHVRLEKLHLTFSMIIQHYRRQPHFR
RSAYREVSLGNGQTADIITFYNSVYVQSMGNYGRHLECAQTRKSLEESQS
NVGILTETTSNELSMRANISISSPPPPRVCQSGSCSSHPPSSPAASPLSL
QSSPNVKRAASSNDLMREIKRPNILRRRQLSVI*

BS12046.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:26:52
Subject Length Description Subject Range Query Range Score Percent Strand
Rbf2-PA 783 CG5083-PA 1..783 1..783 4059 100 Plus
Rbf-PA 845 CG7413-PA 26..707 11..682 690 28.8 Plus