Clone Sequence Records
BS12048.5prime Sequence
360 bp (360 high quality bases) assembled on 2006-06-16
> BS12048.5prime
GAAGTTATCAGTCGACATGAAGTGCACAGTTGCCATCGTCTTCACCGCTC
TCTTCGCCGTCGTTCTGGCTGCCCCCGCTCCCGATGCGGATACCCAGATC
CTGCGTCTGGAGTCCGACGTCCAGCCGGAGGGCTACAACTTTGCTTTGGA
GACCAGCGACGGCAAGAAGCACGAGGAGCAGGGTCAGCTCAAGAACGTCG
GCACCGAACAGGAGGCCATCGTGGTCCGCGGATCCTACTCCTTCGTGGCC
GATGATGGCCAGACCTACACGGTCAACTACATCGCTGACGAGAACGGATT
CCAGCCCGAGGGTGCCCATCTGCCCAATGTGCCCATCGGCAACTAAAAGC
TTTCTAGACC
BS12048.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:27:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6956-PA | 330 | Lcp65Ac-RA | 1..330 | 17..346 | 1650 | 100 | Plus |
CG10529-PA | 300 | Lcp65Ae-RA | 235..284 | 272..321 | 175 | 94 | Plus |
CG18779-PA | 318 | CG18779-RA | 247..300 | 272..325 | 170 | 92.5 | Plus |
CG6955-PA | 327 | Lcp65Ad-RA | 277..313 | 290..326 | 160 | 97.2 | Plus |
CG10533-PA | 303 | Lcp65Af-RA | 247..285 | 287..325 | 145 | 94.8 | Plus |
CG10530-PA | 318 | Lcp65Ag1-RA | 247..300 | 272..325 | 145 | 90.7 | Plus |
CG10534-PA | 318 | Lcp65Ag2-RA | 247..300 | 272..325 | 145 | 90.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:13:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lcp65Ac-RA | 505 | CG6956-RA | 91..422 | 15..346 | 1660 | 100 | Plus |
Lcp65Ad-RB | 616 | CG6955-RB | 176..387 | 115..326 | 400 | 79.8 | Plus |
Lcp65Ad-RA | 521 | CG6955-RA | 176..387 | 115..326 | 400 | 79.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:13:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6145109..6145310 | 145..346 | 1010 | 100 | Plus |
3L | 28110227 | 3L | 6144909..6145038 | 15..144 | 650 | 100 | Plus |
3L | 28110227 | 3L | 6143693..6143872 | 147..326 | 330 | 78.9 | Plus |
3L | 28110227 | 3L | 6137731..6137854 | 325..202 | 320 | 83.9 | Minus |
3L | 28110227 | 3L | 6130569..6130664 | 325..230 | 300 | 87.5 | Minus |
3L | 28110227 | 3L | 6147581..6147730 | 325..176 | 300 | 80 | Minus |
3L | 28110227 | 3L | 6150452..6150601 | 325..176 | 300 | 80 | Minus |
3L | 28110227 | 3L | 6133172..6133267 | 325..230 | 285 | 86.5 | Minus |
3L | 28110227 | 3L | 6134853..6134948 | 325..230 | 285 | 86.5 | Minus |
3L | 28110227 | 3L | 6136398..6136538 | 325..185 | 285 | 80.1 | Minus |
3L | 28110227 | 3L | 6139425..6139576 | 325..174 | 205 | 75.7 | Minus |
3L | 28110227 | 3L | 6152285..6152358 | 327..254 | 190 | 83.8 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:13:24 has no hits.
BS12048.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:43 Download gff for
BS12048.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6956-PA | 1..330 | 17..346 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:39:14 Download gff for
BS12048.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp65Ac-RA | 91..424 | 15..350 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:24:41 Download gff for
BS12048.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp65Ac-RA | 91..424 | 15..350 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:24:41 Download gff for
BS12048.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6144909..6145038 | 15..144 | 100 | -> | Plus |
3L | 6145109..6145312 | 145..350 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:39:14 Download gff for
BS12048.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6138009..6138138 | 15..144 | 100 | -> | Plus |
arm_3L | 6138209..6138412 | 145..350 | 99 | | Plus |
BS12048.3prime Sequence
360 bp (360 high quality bases) assembled on 2006-06-16
> BS12048.3prime
ATGGTCTAGAAAGCTTTTAGTTGCCGATGGGCACATTGGGCAGATGGGCA
CCCTCGGGCTGGAATCCGTTCTCGTCAGCGATGTAGTTGACCGTGTAGGT
CTGGCCATCATCGGCCACGAAGGAGTAGGATCCGCGGACCACGATGGCCT
CCTGTTCGGTGCCGACGTTCTTGAGCTGACCCTGCTCCTCGTGCTTCTTG
CCGTCGCTGGTCTCCAAAGCAAAGTTGTAGCCCTCCGGCTGGACGTCGGA
CTCCAGACGCAGGATCTGGGTATCCGCATCGGGAGCGGGGGCAGCCAGAA
CGACGGCGAAGAGAGCGGTGAAGACGATGGCAACTGTGCACTTCATGTCG
ACTGATAACT
BS12048.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:27:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6956-PA | 330 | Lcp65Ac-RA | 1..330 | 346..17 | 1650 | 100 | Minus |
CG10529-PA | 300 | Lcp65Ae-RA | 235..284 | 91..42 | 175 | 94 | Minus |
CG18779-PA | 318 | CG18779-RA | 247..300 | 91..38 | 170 | 92.5 | Minus |
CG6955-PA | 327 | Lcp65Ad-RA | 277..313 | 73..37 | 160 | 97.2 | Minus |
CG10533-PA | 303 | Lcp65Af-RA | 247..285 | 76..38 | 145 | 94.8 | Minus |
CG10530-PA | 318 | Lcp65Ag1-RA | 247..300 | 91..38 | 145 | 90.7 | Minus |
CG10534-PA | 318 | Lcp65Ag2-RA | 247..300 | 91..38 | 145 | 90.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:13:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lcp65Ac-RA | 505 | CG6956-RA | 91..422 | 348..17 | 1660 | 100 | Minus |
Lcp65Ad-RB | 616 | CG6955-RB | 176..387 | 248..37 | 400 | 79.8 | Minus |
Lcp65Ad-RA | 521 | CG6955-RA | 176..387 | 248..37 | 400 | 79.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:13:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6145109..6145310 | 218..17 | 1010 | 100 | Minus |
3L | 28110227 | 3L | 6144909..6145038 | 348..219 | 650 | 100 | Minus |
3L | 28110227 | 3L | 6143693..6143872 | 216..37 | 330 | 78.9 | Minus |
3L | 28110227 | 3L | 6137731..6137854 | 38..161 | 320 | 83.9 | Plus |
3L | 28110227 | 3L | 6130569..6130664 | 38..133 | 300 | 87.5 | Plus |
3L | 28110227 | 3L | 6147581..6147730 | 38..187 | 300 | 80 | Plus |
3L | 28110227 | 3L | 6150452..6150601 | 38..187 | 300 | 80 | Plus |
3L | 28110227 | 3L | 6133172..6133267 | 38..133 | 285 | 86.5 | Plus |
3L | 28110227 | 3L | 6134853..6134948 | 38..133 | 285 | 86.5 | Plus |
3L | 28110227 | 3L | 6136398..6136538 | 38..178 | 285 | 80.1 | Plus |
3L | 28110227 | 3L | 6139425..6139576 | 38..189 | 205 | 75.7 | Plus |
3L | 28110227 | 3L | 6152285..6152358 | 36..109 | 190 | 83.8 | Plus |
Blast to na_te.dros performed on 2015-02-06 10:13:11 has no hits.
BS12048.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:42 Download gff for
BS12048.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6956-PA | 1..330 | 17..346 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:39:12 Download gff for
BS12048.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp65Ac-RA | 91..424 | 13..348 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:24:39 Download gff for
BS12048.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp65Ac-RA | 91..424 | 13..348 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:24:39 Download gff for
BS12048.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6144909..6145038 | 219..348 | 100 | -> | Minus |
3L | 6145109..6145312 | 13..218 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:39:12 Download gff for
BS12048.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6138009..6138138 | 219..348 | 100 | -> | Minus |
arm_3L | 6138209..6138412 | 13..218 | 99 | | Minus |
BS12048.complete Sequence
362 bp assembled on 2006-11-01
GenBank Submission: FJ637047
> BS12048.complete
GAAGTTATCAGTCGACATGAAGTGCACAGTTGCCATCGTCTTCACCGCTC
TCTTCGCCGTCGTTCTGGCTGCCCCCGCTCCCGATGCGGATACCCAGATC
CTGCGTCTGGAGTCCGACGTCCAGCCGGAGGGCTACAACTTTGCTTTGGA
GACCAGCGACGGCAAGAAGCACGAGGAGCAGGGTCAGCTCAAGAACGTCG
GCACCGAACAGGAGGCCATCGTGGTCCGCGGATCCTACTCCTTCGTGGCC
GATGATGGCCAGACCTACACGGTCAACTACATCGCTGACGAGAACGGATT
CCAGCCCGAGGGTGCCCATCTGCCCAATGTGCCCATCGGCAACTAAAAGC
TTTCTAGACCAT
BS12048.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:58:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lcp65Ac-RA | 330 | CG6956-PA | 1..330 | 17..346 | 1650 | 100 | Plus |
Lcp65Ad-RB | 327 | CG6955-PB | 102..313 | 115..326 | 400 | 79.2 | Plus |
Lcp65Ad-RA | 327 | CG6955-PA | 102..313 | 115..326 | 400 | 79.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:58:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lcp65Ac-RA | 505 | CG6956-RA | 91..422 | 15..346 | 1660 | 100 | Plus |
Lcp65Ad-RB | 616 | CG6955-RB | 176..387 | 115..326 | 400 | 79.2 | Plus |
Lcp65Ad-RA | 521 | CG6955-RA | 176..387 | 115..326 | 400 | 79.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:58:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6145109..6145310 | 145..346 | 1010 | 100 | Plus |
3L | 28110227 | 3L | 6144909..6145038 | 15..144 | 650 | 100 | Plus |
3L | 28110227 | 3L | 6143693..6143872 | 147..326 | 330 | 78.9 | Plus |
3L | 28110227 | 3L | 6137731..6137854 | 325..202 | 320 | 83.9 | Minus |
3L | 28110227 | 3L | 6130569..6130664 | 325..230 | 300 | 87.5 | Minus |
3L | 28110227 | 3L | 6147581..6147730 | 325..176 | 300 | 80 | Minus |
3L | 28110227 | 3L | 6150452..6150601 | 325..176 | 300 | 80 | Minus |
3L | 28110227 | 3L | 6133172..6133267 | 325..230 | 285 | 86.5 | Minus |
3L | 28110227 | 3L | 6134853..6134948 | 325..230 | 285 | 86.5 | Minus |
3L | 28110227 | 3L | 6136398..6136538 | 325..185 | 285 | 80.1 | Minus |
3L | 28110227 | 3L | 6139425..6139576 | 325..174 | 205 | 75.7 | Minus |
3L | 28110227 | 3L | 6152285..6152358 | 327..254 | 190 | 83.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:58:10 has no hits.
BS12048.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:38:38 Download gff for
BS12048.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp65Ac-RA | 1..330 | 17..346 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:16:36 Download gff for
BS12048.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp65Ac-RA | 86..419 | 15..350 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:47 Download gff for
BS12048.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp65Ac-RA | 93..420 | 17..344 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:38:38 Download gff for
BS12048.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp65Ac-RA | 86..419 | 15..350 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:07:07 Download gff for
BS12048.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp65Ac-RA | 93..420 | 17..344 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:07:07 Download gff for
BS12048.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6144911..6145038 | 17..144 | 100 | -> | Plus |
3L | 6145109..6145308 | 145..344 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:47 Download gff for
BS12048.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6138011..6138138 | 17..144 | 100 | -> | Plus |
arm_3L | 6138209..6138408 | 145..344 | 100 | | Plus |
BS12048.pep Sequence
Translation from 16 to 345
> BS12048.pep
MKCTVAIVFTALFAVVLAAPAPDADTQILRLESDVQPEGYNFALETSDGK
KHEEQGQLKNVGTEQEAIVVRGSYSFVADDGQTYTVNYIADENGFQPEGA
HLPNVPIGN*
BS12048.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:32:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lcp65Ac-PA | 109 | CG6956-PA | 1..109 | 1..109 | 563 | 100 | Plus |
Lcp65Ad-PB | 108 | CG6955-PB | 1..104 | 1..103 | 382 | 69.2 | Plus |
Lcp65Ad-PA | 108 | CG6955-PA | 1..104 | 1..103 | 382 | 69.2 | Plus |
Lcp65Ag3-PA | 105 | CG18779-PA | 5..104 | 7..107 | 328 | 65.3 | Plus |
Lcp65Ag1-PA | 105 | CG10530-PA | 5..104 | 7..107 | 325 | 64.4 | Plus |