Clone Sequence Records
BS12049.3prime Sequence
930 bp (842 high quality bases) assembled on 2006-06-16
> BS12049.3prime
ATGGTCTAGAAAGCTTTTAAGCCTCAGTTTCAGACTGCAGCTTGGCAACA
TATGCTGCCTTATGAGCTGCAATCTTAGTCTTCCGTTGCTCGTTTGTGAG
TTTCTTAGCATTCCACCTTTTCTTCGTAACGGCAGAAGACTTCTTAGCGG
TGACCTTGTGTGTAGGGTCGTTACGAATTGCCTGGTGGGCTTTTTTATAG
ATATCCTCAAGATCATCAGCACGAATGCCCAACTTGATGTATCGGCTAAA
CTGCCTTTTGAAGCTCTCCTCATCCTCCTCCTCCAAAGAACGCATATAGT
CTGCAACGTGCTGGCCAAATATATGAGCGCGATGCACATCGGCATTAAAG
CTCTTGGTTTCAGCAGAGTATCCAGGAAAGCGTTTCACAGAGTGAGGTAT
GTTTAGACCACCATCAACTGCTCCCTTCATAGCGCCAAACACACGGGCAC
CAGTTGTAGTACGAGCGAGTCCAACATCCAAGAAGCAACGGAATGCCCCT
GGGCCGTCATCAACAGGCTCGACGTTGAACTCCTCACCAGTCACTTCAGT
GCATCCTGCATATAGGGAGTCCAGTCCCAACTTGTTAAGGACACGACGGG
CGACCAGCAGGCCTGTGCAGTAAGCAGCAGCGTAGTTGGTCAATCCAACC
TGGATCCCGTATTTGGGAAGCTCATGGGAATAAGCAGCGCACACCACGCG
ATCACCCTCGATGCGAGCATAGGCGATCTGTACTGTGATGTCCTTGTTGG
ACAAACGTACGATCAAACGGTACTTGGGAGTGTTGTACTTGTTCTTGTCC
TGAAATGTTAGGCGTTTCCTGGCATAGTAATCGGTCTTTCCTTCGCGACG
CCTTCGGAACTTGACTTGGTACCTCTTAAAGTACTGCTTGTTCTTGACTA
CCTTAACGAAACCCATGTCGACTGATAACT
BS12049.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:27:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17489-PA | 900 | RpL5-RA | 1..900 | 916..17 | 4500 | 100 | Minus |
CG17489-PB | 900 | RpL5-RB | 1..900 | 916..17 | 4500 | 100 | Minus |
CG17489-PC | 963 | RpL5-RC | 66..963 | 914..17 | 4490 | 100 | Minus |
CG17489-PE | 537 | RpL5-RE | 1..529 | 916..388 | 2645 | 100 | Minus |
CG17489-PD | 537 | RpL5-RD | 1..529 | 916..388 | 2645 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:19:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL5-RG | 1945 | CG17489-RG | 94..996 | 916..14 | 4515 | 100 | Minus |
RpL5-RH | 3835 | CG17489-RH | 346..1248 | 916..14 | 4515 | 100 | Minus |
RpL5-RB | 1024 | CG17489-RB | 57..959 | 916..14 | 4515 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:19:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 22535617..22536056 | 212..651 | 2200 | 100 | Plus |
2L | 23513712 | 2L | 22536113..22536379 | 648..914 | 1335 | 100 | Plus |
2L | 23513712 | 2L | 22534866..22535063 | 14..211 | 990 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:19:03 has no hits.
BS12049.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:43 Download gff for
BS12049.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17489-PB | 1..900 | 17..916 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:05:17 Download gff for
BS12049.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL5-RA | 80..987 | 9..916 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:40:30 Download gff for
BS12049.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL5-RB | 57..964 | 9..916 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:40:30 Download gff for
BS12049.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22534861..22535063 | 9..211 | 99 | <- | Plus |
2L | 22535617..22536054 | 212..649 | 100 | <- | Plus |
2L | 22536115..22536381 | 650..917 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:05:17 Download gff for
BS12049.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22427593..22427795 | 9..211 | 99 | <- | Plus |
arm_2L | 22428349..22428786 | 212..649 | 100 | <- | Plus |
arm_2L | 22428847..22429113 | 650..917 | 99 | | Plus |
BS12049.complete Sequence
932 bp assembled on 2006-11-01
GenBank Submission: FJ637048
> BS12049.complete
GAAGTTATCAGTCGACATGGGTTTCGTTAAGGTAGTCAAGAACAAGCAGT
ACTTTAAGAGGTACCAAGTCAAGTTCCGAAGGCGTCGCGAAGGAAAGACC
GATTACTATGCCAGGAAACGCCTAACATTTCAGGACAAGAACAAGTACAA
CACTCCCAAGTACCGTTTGATCGTACGTTTGTCCAACAAGGACATCACAG
TACAGATCGCCTATGCTCGCATCGAGGGTGATCGCGTGGTGTGCGCTGCT
TATTCCCATGAGCTTCCCAAATACGGGATCCAGGTTGGATTGACCAACTA
CGCTGCTGCTTACTGCACAGGCCTGCTGGTCGCCCGTCGTGTCCTTAACA
AGTTGGGACTGGACTCCCTATATGCAGGATGCACTGAAGTGACTGGTGAG
GAGTTCAACGTCGAGCCTGTTGATGACGGCCCAGGGGCATTCCGTTGCTT
CTTGGATGTTGGACTCGCTCGTACTACAACTGGTGCCCGTGTGTTTGGCG
CTATGAAGGGAGCAGTTGATGGTGGTCTAAACATACCTCACTCTGTGAAA
CGCTTTCCTGGATACTCTGCTGAAACCAAGAGCTTTAATGCCGATGTGCA
TCGCGCTCATATATTTGGCCAGCACGTTGCAGACTATATGCGTTCTTTGG
AGGAGGAGGATGAGGAGAGCTTCAAAAGGCAGTTTAGCCGATACATCAAG
TTGGGCATTCGTGCTGATGATCTTGAGGATATCTATAAAAAAGCCCACCA
GGCAATTCGTAACGACCCTACACACAAGGTCACCGCTAAGAAGTCTTCTG
CCGTTACGAAGAAAAGGTGGAATGCTAAGAAACTCACAAACGAGCAACGG
AAGACTAAGATTGCAGCTCATAAGGCAGCATATGTTGCCAAGCTGCAGTC
TGAAACTGAGGCTTAAAAGCTTTCTAGACCAT
BS12049.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:07:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL5-RG | 900 | CG17489-PG | 1..900 | 17..916 | 4500 | 100 | Plus |
RpL5-RH | 900 | CG17489-PH | 1..900 | 17..916 | 4500 | 100 | Plus |
RpL5-RB | 900 | CG17489-PB | 1..900 | 17..916 | 4500 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:07:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL5-RG | 1945 | CG17489-RG | 94..996 | 17..919 | 4515 | 100 | Plus |
RpL5-RH | 3835 | CG17489-RH | 346..1248 | 17..919 | 4515 | 100 | Plus |
RpL5-RB | 1024 | CG17489-RB | 57..959 | 17..919 | 4515 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:07:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 22535617..22536056 | 721..282 | 2200 | 100 | Minus |
2L | 23513712 | 2L | 22536113..22536379 | 285..19 | 1335 | 100 | Minus |
2L | 23513712 | 2L | 22534866..22535063 | 919..722 | 990 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:07:56 has no hits.
BS12049.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:46:52 Download gff for
BS12049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL5-RB | 1..900 | 17..916 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:22:00 Download gff for
BS12049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL5-RB | 94..1001 | 17..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:07:05 Download gff for
BS12049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL5-RA | 80..977 | 17..914 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:46:52 Download gff for
BS12049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL5-RB | 94..1001 | 17..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:15:30 Download gff for
BS12049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL5-RB | 57..954 | 17..914 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:15:30 Download gff for
BS12049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22534871..22535063 | 722..914 | 100 | <- | Minus |
2L | 22535617..22536054 | 284..721 | 100 | <- | Minus |
2L | 22536115..22536380 | 17..283 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:07:05 Download gff for
BS12049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22427603..22427795 | 722..914 | 100 | <- | Minus |
arm_2L | 22428349..22428786 | 284..721 | 100 | <- | Minus |
arm_2L | 22428847..22429112 | 17..283 | 99 | | Minus |
BS12049.pep Sequence
Translation from 16 to 915
> BS12049.pep
MGFVKVVKNKQYFKRYQVKFRRRREGKTDYYARKRLTFQDKNKYNTPKYR
LIVRLSNKDITVQIAYARIEGDRVVCAAYSHELPKYGIQVGLTNYAAAYC
TGLLVARRVLNKLGLDSLYAGCTEVTGEEFNVEPVDDGPGAFRCFLDVGL
ARTTTGARVFGAMKGAVDGGLNIPHSVKRFPGYSAETKSFNADVHRAHIF
GQHVADYMRSLEEEDEESFKRQFSRYIKLGIRADDLEDIYKKAHQAIRND
PTHKVTAKKSSAVTKKRWNAKKLTNEQRKTKIAAHKAAYVAKLQSETEA*
BS12049.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:32:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL5-PG | 299 | CG17489-PG | 1..299 | 1..299 | 1553 | 100 | Plus |
RpL5-PH | 299 | CG17489-PH | 1..299 | 1..299 | 1553 | 100 | Plus |
RpL5-PB | 299 | CG17489-PB | 1..299 | 1..299 | 1553 | 100 | Plus |
RpL5-PA | 299 | CG17489-PA | 1..299 | 1..299 | 1553 | 100 | Plus |