Clone BS12049 Report

Search the DGRC for BS12049

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:120
Well:49
Vector:pDNR-Dual
Associated Gene/TranscriptRpL5-RA
Protein status:BS12049.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12049.3prime Sequence

930 bp (842 high quality bases) assembled on 2006-06-16

> BS12049.3prime
ATGGTCTAGAAAGCTTTTAAGCCTCAGTTTCAGACTGCAGCTTGGCAACA
TATGCTGCCTTATGAGCTGCAATCTTAGTCTTCCGTTGCTCGTTTGTGAG
TTTCTTAGCATTCCACCTTTTCTTCGTAACGGCAGAAGACTTCTTAGCGG
TGACCTTGTGTGTAGGGTCGTTACGAATTGCCTGGTGGGCTTTTTTATAG
ATATCCTCAAGATCATCAGCACGAATGCCCAACTTGATGTATCGGCTAAA
CTGCCTTTTGAAGCTCTCCTCATCCTCCTCCTCCAAAGAACGCATATAGT
CTGCAACGTGCTGGCCAAATATATGAGCGCGATGCACATCGGCATTAAAG
CTCTTGGTTTCAGCAGAGTATCCAGGAAAGCGTTTCACAGAGTGAGGTAT
GTTTAGACCACCATCAACTGCTCCCTTCATAGCGCCAAACACACGGGCAC
CAGTTGTAGTACGAGCGAGTCCAACATCCAAGAAGCAACGGAATGCCCCT
GGGCCGTCATCAACAGGCTCGACGTTGAACTCCTCACCAGTCACTTCAGT
GCATCCTGCATATAGGGAGTCCAGTCCCAACTTGTTAAGGACACGACGGG
CGACCAGCAGGCCTGTGCAGTAAGCAGCAGCGTAGTTGGTCAATCCAACC
TGGATCCCGTATTTGGGAAGCTCATGGGAATAAGCAGCGCACACCACGCG
ATCACCCTCGATGCGAGCATAGGCGATCTGTACTGTGATGTCCTTGTTGG
ACAAACGTACGATCAAACGGTACTTGGGAGTGTTGTACTTGTTCTTGTCC
TGAAATGTTAGGCGTTTCCTGGCATAGTAATCGGTCTTTCCTTCGCGACG
CCTTCGGAACTTGACTTGGTACCTCTTAAAGTACTGCTTGTTCTTGACTA
CCTTAACGAAACCCATGTCGACTGATAACT

BS12049.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:27:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG17489-PA 900 RpL5-RA 1..900 916..17 4500 100 Minus
CG17489-PB 900 RpL5-RB 1..900 916..17 4500 100 Minus
CG17489-PC 963 RpL5-RC 66..963 914..17 4490 100 Minus
CG17489-PE 537 RpL5-RE 1..529 916..388 2645 100 Minus
CG17489-PD 537 RpL5-RD 1..529 916..388 2645 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:19:07
Subject Length Description Subject Range Query Range Score Percent Strand
RpL5-RG 1945 CG17489-RG 94..996 916..14 4515 100 Minus
RpL5-RH 3835 CG17489-RH 346..1248 916..14 4515 100 Minus
RpL5-RB 1024 CG17489-RB 57..959 916..14 4515 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:19:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22535617..22536056 212..651 2200 100 Plus
2L 23513712 2L 22536113..22536379 648..914 1335 100 Plus
2L 23513712 2L 22534866..22535063 14..211 990 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:19:03 has no hits.

BS12049.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:43 Download gff for BS12049.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17489-PB 1..900 17..916 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:05:17 Download gff for BS12049.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL5-RA 80..987 9..916 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:40:30 Download gff for BS12049.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL5-RB 57..964 9..916 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:40:30 Download gff for BS12049.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 22534861..22535063 9..211 99 <- Plus
2L 22535617..22536054 212..649 100 <- Plus
2L 22536115..22536381 650..917 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:05:17 Download gff for BS12049.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22427593..22427795 9..211 99 <- Plus
arm_2L 22428349..22428786 212..649 100 <- Plus
arm_2L 22428847..22429113 650..917 99   Plus

BS12049.complete Sequence

932 bp assembled on 2006-11-01

GenBank Submission: FJ637048

> BS12049.complete
GAAGTTATCAGTCGACATGGGTTTCGTTAAGGTAGTCAAGAACAAGCAGT
ACTTTAAGAGGTACCAAGTCAAGTTCCGAAGGCGTCGCGAAGGAAAGACC
GATTACTATGCCAGGAAACGCCTAACATTTCAGGACAAGAACAAGTACAA
CACTCCCAAGTACCGTTTGATCGTACGTTTGTCCAACAAGGACATCACAG
TACAGATCGCCTATGCTCGCATCGAGGGTGATCGCGTGGTGTGCGCTGCT
TATTCCCATGAGCTTCCCAAATACGGGATCCAGGTTGGATTGACCAACTA
CGCTGCTGCTTACTGCACAGGCCTGCTGGTCGCCCGTCGTGTCCTTAACA
AGTTGGGACTGGACTCCCTATATGCAGGATGCACTGAAGTGACTGGTGAG
GAGTTCAACGTCGAGCCTGTTGATGACGGCCCAGGGGCATTCCGTTGCTT
CTTGGATGTTGGACTCGCTCGTACTACAACTGGTGCCCGTGTGTTTGGCG
CTATGAAGGGAGCAGTTGATGGTGGTCTAAACATACCTCACTCTGTGAAA
CGCTTTCCTGGATACTCTGCTGAAACCAAGAGCTTTAATGCCGATGTGCA
TCGCGCTCATATATTTGGCCAGCACGTTGCAGACTATATGCGTTCTTTGG
AGGAGGAGGATGAGGAGAGCTTCAAAAGGCAGTTTAGCCGATACATCAAG
TTGGGCATTCGTGCTGATGATCTTGAGGATATCTATAAAAAAGCCCACCA
GGCAATTCGTAACGACCCTACACACAAGGTCACCGCTAAGAAGTCTTCTG
CCGTTACGAAGAAAAGGTGGAATGCTAAGAAACTCACAAACGAGCAACGG
AAGACTAAGATTGCAGCTCATAAGGCAGCATATGTTGCCAAGCTGCAGTC
TGAAACTGAGGCTTAAAAGCTTTCTAGACCAT

BS12049.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:07:57
Subject Length Description Subject Range Query Range Score Percent Strand
RpL5-RG 900 CG17489-PG 1..900 17..916 4500 100 Plus
RpL5-RH 900 CG17489-PH 1..900 17..916 4500 100 Plus
RpL5-RB 900 CG17489-PB 1..900 17..916 4500 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:07:59
Subject Length Description Subject Range Query Range Score Percent Strand
RpL5-RG 1945 CG17489-RG 94..996 17..919 4515 100 Plus
RpL5-RH 3835 CG17489-RH 346..1248 17..919 4515 100 Plus
RpL5-RB 1024 CG17489-RB 57..959 17..919 4515 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:07:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22535617..22536056 721..282 2200 100 Minus
2L 23513712 2L 22536113..22536379 285..19 1335 100 Minus
2L 23513712 2L 22534866..22535063 919..722 990 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:07:56 has no hits.

BS12049.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:46:52 Download gff for BS12049.complete
Subject Subject Range Query Range Percent Splice Strand
RpL5-RB 1..900 17..916 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:22:00 Download gff for BS12049.complete
Subject Subject Range Query Range Percent Splice Strand
RpL5-RB 94..1001 17..924 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:07:05 Download gff for BS12049.complete
Subject Subject Range Query Range Percent Splice Strand
RpL5-RA 80..977 17..914 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:46:52 Download gff for BS12049.complete
Subject Subject Range Query Range Percent Splice Strand
RpL5-RB 94..1001 17..924 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:15:30 Download gff for BS12049.complete
Subject Subject Range Query Range Percent Splice Strand
RpL5-RB 57..954 17..914 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:15:30 Download gff for BS12049.complete
Subject Subject Range Query Range Percent Splice Strand
2L 22534871..22535063 722..914 100 <- Minus
2L 22535617..22536054 284..721 100 <- Minus
2L 22536115..22536380 17..283 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:07:05 Download gff for BS12049.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22427603..22427795 722..914 100 <- Minus
arm_2L 22428349..22428786 284..721 100 <- Minus
arm_2L 22428847..22429112 17..283 99   Minus

BS12049.pep Sequence

Translation from 16 to 915

> BS12049.pep
MGFVKVVKNKQYFKRYQVKFRRRREGKTDYYARKRLTFQDKNKYNTPKYR
LIVRLSNKDITVQIAYARIEGDRVVCAAYSHELPKYGIQVGLTNYAAAYC
TGLLVARRVLNKLGLDSLYAGCTEVTGEEFNVEPVDDGPGAFRCFLDVGL
ARTTTGARVFGAMKGAVDGGLNIPHSVKRFPGYSAETKSFNADVHRAHIF
GQHVADYMRSLEEEDEESFKRQFSRYIKLGIRADDLEDIYKKAHQAIRND
PTHKVTAKKSSAVTKKRWNAKKLTNEQRKTKIAAHKAAYVAKLQSETEA*

BS12049.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:32:18
Subject Length Description Subject Range Query Range Score Percent Strand
RpL5-PG 299 CG17489-PG 1..299 1..299 1553 100 Plus
RpL5-PH 299 CG17489-PH 1..299 1..299 1553 100 Plus
RpL5-PB 299 CG17489-PB 1..299 1..299 1553 100 Plus
RpL5-PA 299 CG17489-PA 1..299 1..299 1553 100 Plus