BS12050.complete Sequence
1553 bp assembled on 2006-11-01
GenBank Submission: FJ637049
> BS12050.complete
GAAGTTATCAGTCGACATGGCTGGACGCGATGCGGCTTCCAATCAGTTGA
TTGACTACAAAAACTCCCAAACGGTTTCTCCTGGTGCCATTACCACCGGC
AATGGAGCACCCATTGGAATCAAGGATGCCTCCCAGACGGTTGGTCCGCG
AGGACCTATCCTGCTGCAGGATGTGAACTTCCTGGATGAGATGTCGCACT
TCGACAGGGAGCGGATTCCAGAGCGTGTCGTGCACGCCAAGGGAGCTGGT
GCTTTTGGTTACTTTGAGGTGACCCATGACATCACCCAGTATTGTGCCGC
CAAGATTTTCGACAAGGTCAAGAAGCGCACTCCACTGGCCGTGCGATTCT
CCACCGTGGGTGGTGAGAGCGGATCTGCGGACACCGCCCGCGATCCTCGA
GGATTTGCCGTCAAGTTCTACACTGAGGATGGCGTCTGGGATTTGGTTGG
CAACAACACGCCGGTCTTCTTCATTCGCGACCCGATCCTATTCCCCAGCT
TCATTCACACCCAGAAGCGCAACCCGCAGACGCATCTGAAGGATCCGGAC
ATGTTCTGGGACTTCCTCACCCTGCGACCGGAGTCCGCTCACCAGGTGTG
CATCCTGTTCAGCGATCGCGGCACCCCCGACGGTTACTGCCACATGAACG
GCTATGGCTCGCACACCTTCAAATTGATCAACGCCAAGGGCGAGCCCATC
TATGCCAAGTTCCACTTCAAGACGGACCAGGGCATCAAGAATTTGGACGT
GAAGACCGCCGATCAGTTGGCTAGCACTGATCCGGATTACAGCATTCGCG
ATCTGTACAACAGGATCAAGACCTGCAAGTTCCCCAGTTGGACGATGTAC
ATTCAGGTCATGACCTACGAGCAGGCCAAGAAGTTCAAGTACAACCCCTT
CGATGTCACCAAGGTCTGGTCGCAGAAGGAGTACCCTCTGATTCCTGTGG
GCAAAATGGTGCTGGATCGCAATCCCAAGAACTACTTTGCTGAGGTGGAG
CAGATCGCCTTCAGTCCCGCTCACCTGGTGCCCGGCGTTGAGCCCTCTCC
GGACAAGATGCTGCATGGTCGTCTGTTCTCCTACTCGGACACCCATCGCC
ATCGCCTGGGACCGAACTACTTGCAGATCCCGGTGAACTGCCCGTACAAG
GTGAAGATTGAGAACTTCCAGCGGGATGGAGCCATGAATGTGACGGACAA
CCAGGATGGTGCCCCCAACTACTTCCCCAACTCGTTCAACGGTCCCCAGG
AATGCCCCAGGGCCAGGGCCTTGTCCTCCTGCTGTCCGGTGACTGGAGAT
GTCTACCGCTACAGCAGCGGCGACACCGAGGACAACTTCGGCCAGGTCAC
CGACTTCTGGGTGCATGTGCTCGACAAGTGCGCCAAGAAGCGTCTGGTGC
AGAACATTGCCGGCCATTTGAGCAACGCCAGCCAGTTCTTGCAGGAGCGG
GCCGTCAAGAACTTCACCCAGGTGCACGCCGATTTCGGTCGCATGCTGAC
CGAGGAACTCAACCTGGCCAAGTCCTCGAAGTTCTAAAAGCTTTCTAGAC
CAT
BS12050.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:51:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cat-RA | 1521 | CG6871-PA | 1..1521 | 17..1537 | 7590 | 99.9 | Plus |
| CG9314-RC | 1521 | CG9314-PC | 104..1472 | 120..1488 | 1250 | 72.8 | Plus |
| CG9314-RA | 1521 | CG9314-PA | 104..1472 | 120..1488 | 1250 | 72.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:51:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cat-RA | 1993 | CG6871-RA | 183..1703 | 17..1537 | 7590 | 99.9 | Plus |
| CG9314-RC | 1893 | CG9314-RC | 227..1595 | 120..1488 | 1250 | 72.8 | Plus |
| CG9314-RA | 1806 | CG9314-RA | 227..1595 | 120..1488 | 1250 | 72.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:51:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18826337..18827260 | 73..996 | 4605 | 99.9 | Plus |
| 3L | 28110227 | 3L | 18827354..18827898 | 993..1537 | 2725 | 100 | Plus |
| 2L | 23513712 | 2L | 8706633..8707229 | 892..1488 | 750 | 75 | Plus |
| 2L | 23513712 | 2L | 8705798..8706427 | 120..749 | 555 | 72.5 | Plus |
| 3L | 28110227 | 3L | 18822786..18822844 | 17..75 | 295 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:51:33 has no hits.
BS12050.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:46:55 Download gff for
BS12050.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cat-RA | 1..1521 | 17..1537 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:22:03 Download gff for
BS12050.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cat-RA | 170..1704 | 5..1542 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:42:22 Download gff for
BS12050.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cat-RA | 183..1701 | 17..1535 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:46:55 Download gff for
BS12050.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cat-RA | 170..1704 | 5..1542 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:32:37 Download gff for
BS12050.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cat-RA | 183..1701 | 17..1535 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:32:37 Download gff for
BS12050.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18822786..18822842 | 17..73 | 100 | -> | Plus |
| 3L | 18826338..18827258 | 74..994 | 99 | -> | Plus |
| 3L | 18827356..18827896 | 995..1535 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:42:22 Download gff for
BS12050.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18815886..18815942 | 17..73 | 100 | -> | Plus |
| arm_3L | 18819438..18820358 | 74..994 | 99 | -> | Plus |
| arm_3L | 18820456..18820996 | 995..1535 | 100 | | Plus |
BS12050.pep Sequence
Translation from 16 to 1536
> BS12050.pep
MAGRDAASNQLIDYKNSQTVSPGAITTGNGAPIGIKDASQTVGPRGPILL
QDVNFLDEMSHFDRERIPERVVHAKGAGAFGYFEVTHDITQYCAAKIFDK
VKKRTPLAVRFSTVGGESGSADTARDPRGFAVKFYTEDGVWDLVGNNTPV
FFIRDPILFPSFIHTQKRNPQTHLKDPDMFWDFLTLRPESAHQVCILFSD
RGTPDGYCHMNGYGSHTFKLINAKGEPIYAKFHFKTDQGIKNLDVKTADQ
LASTDPDYSIRDLYNRIKTCKFPSWTMYIQVMTYEQAKKFKYNPFDVTKV
WSQKEYPLIPVGKMVLDRNPKNYFAEVEQIAFSPAHLVPGVEPSPDKMLH
GRLFSYSDTHRHRLGPNYLQIPVNCPYKVKIENFQRDGAMNVTDNQDGAP
NYFPNSFNGPQECPRARALSSCCPVTGDVYRYSSGDTEDNFGQVTDFWVH
VLDKCAKKRLVQNIAGHLSNASQFLQERAVKNFTQVHADFGRMLTEELNL
AKSSKF*
BS12050.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:32:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cat-PA | 506 | CG6871-PA | 1..506 | 1..506 | 2731 | 100 | Plus |
| CG9314-PC | 506 | CG9314-PC | 1..506 | 1..506 | 2025 | 70.4 | Plus |
| CG9314-PA | 506 | CG9314-PA | 1..506 | 1..506 | 2025 | 70.4 | Plus |
