BS12053.complete Sequence
1844 bp assembled on 2009-12-07
GenBank Submission: KX804479
> BS12053.complete
GAAGTTATCAGTCGACATGTCGTCGCCATGGGTTAAGACCAGCGAGCCTG
TGCAGCAGGTGAATCTGGCGGATATAATGTCGGAGCAATATGCCCACAAG
TTGCACGACAAGGAGCTGCAGCGCCACACGGAGAAGCTGAAAAGACCGGA
CGAACAGATAGCACCCGTTTGGGGGTCGCAAGCCTCATCCCCGCCAGCGC
CCAATGCGCAGAGTATCCAAAGTGATGCGGAGGATTGGGAGGATTACTCT
GCGCTCCTCAATGACGAAGGAAACGTAGCGGAGGACATTCAGCTGCCGGA
AGACAGCGATGCAGTTATTGCCCAGCTGTTGCAGTCCCAGTTCGATCACG
AGTACAATGAGGAATTGCGTCGTATCGAGCGGCAGCAAAACAAGCAATCC
AAGGTCACTGTTACCCTCAATAAGTTCCTACGTGATGGCGATGCAGAGTT
CTTGCACGACACCGCGGAAGATGACTACGAAGAGGATGAATTGGAGCAAC
AGAAGCACGACTGGGATCGGTTCGAGGACAATGAACGGCAGCTTGACTCC
ATACCTCGCTGCGGCTTTAAAGTTAACAAGGAGGGCGAGATGATAACAAA
GCACGATCCGCAGCTGTGCGCCGTGCGTAATGCCCAGCGCGTGATGTCCT
TTCCGCCGGAGTTTCCCACCGGTGATGCTGCCGGTTTCGACATGAAGCTC
TCCAATAAGGTGTTTAACCAACTACGAGCCCATTCTCGACGAGGCCGCTC
CGACAAGCACGAGAAAGTGGCCACCGCGGAGATGGGATTGGATGCGGGTA
CACGTTTGCTGCTGTACAAGCTGATCAATAACCAAATACTGGAGCAGATC
AACGGCATTATATCCACGGGCAAGGAGGCGGTCATCTTGCACGCCAATTC
CGATGCGAACTATACGGGCAGCAACGAGCATGGTCACCAGAGTGGTGTGC
TCGTTCCACCGCAGCTTTTGCCCCGGGAGTGTGCCATTAAAATCTTTAAA
ACCACGCTCAACGAGTTCAAGCAGCGCGATAGATACATCAAGGATGACTA
TCGGTTCAAGGATCGCTTTAGCAAACAAAACCACCGAGTGATTATCAATA
TGTGGGCCGAGAAGGAGATGCATAATCTGATGAGGATGCAAGCCATTGGC
CTAAACGTTCCAGACGTTGTTGTGCTGAAGAAGCACGTGCTGGTAATGCG
GTTCATCGGTGACAATCATAACGCTGCGCCCAAGTTAAAGGATGCCCGTC
TGAGCGACGCGGAGCTGAGTTGCGCCTACGAAGAGATTGTGGCCGCGATG
CACAAGTTGTACAATGAGGCGAAGCTGGTGCACGCCGATATGAGCGAATA
TAACATACTCTGGTTCGAGGGCAAGTGCTGGTTTATTGACGTGGCCCAGA
GTGTCGAACCGAAGCATCCCAGTGCCCTGGAGTTCCTGATGAGGGATTGC
GGCAACATTGTTAACTTCTTTGAACGACGCGGCCTGCCCAACATTTACAC
CAAGGAGCAGTTGTTCGAGTTTATTACGGGTCTCAATTCAGAGGTCCACA
CCGCCGCTCAGCTGGAGCAGATCCACACGCGTGGCGCTTCCATTAGCCAA
GCCACTGCTCCGAATCAGGAGGAGTGCCCCGACGAACTGAAACCCTTGGA
GTATCCCTTTGAGCTGGCCTGGGAAAAATCACAACAAGATCGCGCTGCTC
AAAAGGCTCTGCAGCAAGCGCAGGATAATAACGATAACAAAACCGACACG
GATAAGGATCAAGAGACCGATGACAATGAGAATGATAGTGACGACAAGGA
AAAGATTAACAAAACTGCCAACCATTGAAAGCTTTCTAGACCAT
BS12053.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:06:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3008-RA | 1812 | CG3008-PA | 1..1812 | 17..1828 | 9060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:06:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3008-RA | 2263 | CG3008-RA | 292..2105 | 17..1830 | 9070 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:06:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4884389..4885511 | 708..1830 | 5615 | 100 | Plus |
| 2L | 23513712 | 2L | 4883647..4884341 | 17..711 | 3475 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:06:45 has no hits.
BS12053.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:45:44 Download gff for
BS12053.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3008-RA | 419..2229 | 17..1827 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:06:12 Download gff for
BS12053.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3008-RA | 292..2102 | 17..1827 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:06:45 Download gff for
BS12053.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3008-RA | 291..2101 | 17..1827 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:04:14 Download gff for
BS12053.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3008-RA | 292..2102 | 17..1827 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:04:14 Download gff for
BS12053.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4883647..4884339 | 17..709 | 100 | -> | Plus |
| 2L | 4884391..4885508 | 710..1827 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:06:12 Download gff for
BS12053.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4883647..4884339 | 17..709 | 100 | -> | Plus |
| arm_2L | 4884391..4885508 | 710..1827 | 100 | | Plus |
BS12053.pep Sequence
Translation from 16 to 1827
> BS12053.pep
MSSPWVKTSEPVQQVNLADIMSEQYAHKLHDKELQRHTEKLKRPDEQIAP
VWGSQASSPPAPNAQSIQSDAEDWEDYSALLNDEGNVAEDIQLPEDSDAV
IAQLLQSQFDHEYNEELRRIERQQNKQSKVTVTLNKFLRDGDAEFLHDTA
EDDYEEDELEQQKHDWDRFEDNERQLDSIPRCGFKVNKEGEMITKHDPQL
CAVRNAQRVMSFPPEFPTGDAAGFDMKLSNKVFNQLRAHSRRGRSDKHEK
VATAEMGLDAGTRLLLYKLINNQILEQINGIISTGKEAVILHANSDANYT
GSNEHGHQSGVLVPPQLLPRECAIKIFKTTLNEFKQRDRYIKDDYRFKDR
FSKQNHRVIINMWAEKEMHNLMRMQAIGLNVPDVVVLKKHVLVMRFIGDN
HNAAPKLKDARLSDAELSCAYEEIVAAMHKLYNEAKLVHADMSEYNILWF
EGKCWFIDVAQSVEPKHPSALEFLMRDCGNIVNFFERRGLPNIYTKEQLF
EFITGLNSEVHTAAQLEQIHTRGASISQATAPNQEECPDELKPLEYPFEL
AWEKSQQDRAAQKALQQAQDNNDNKTDTDKDQETDDNENDSDDKEKINKT
ANH*
BS12053.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:35:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3008-PA | 603 | CG3008-PA | 1..603 | 1..603 | 3176 | 100 | Plus |
| RIOK1-PB | 585 | CG11660-PB | 66..538 | 148..602 | 575 | 31.9 | Plus |
| RIOK1-PA | 585 | CG11660-PA | 66..538 | 148..602 | 575 | 31.9 | Plus |
