BS12054.complete Sequence
2024 bp assembled on 2009-12-07
GenBank Submission: KX801833
> BS12054.complete
GAAGTTATCAGTCGACATGCTCCTCGTTCTGCTCCTTCTTCAAATTATCG
CTGCGCTCGGCGATGTCGATAACTGTGAACCGAAGTCCCTGGCCAAGGAC
CTGATCGAAATGGTTCCCCAACGCGAAAACACCACACTGTCCAAGTGTGA
GGAACAGCTGCTGGAACTGCGAAGAGCTTGGCAGGATCACCAGTCCTGGG
CACTGAAAGCTATTGACGCCTCCGGCGAGGGCTACGCCAACTTTATGATG
GGCCAGAGAGCCTGGCTGGGCAACAGATTCACATGCCGCGCCGTCAATGA
ACCGATGCTCCAGGATATGACCATCAAAAATCAGCGTCTGCTGCGCGAGA
TGTCGCCCATTCAATTCCACTATTTGGTCGCCTACATTGAATCCAATTCG
CCGTGGCAGCTGGAGGTGACCATCAAAGCGAATCCCCTGCTGCACATTGG
CCTCTGTCTGCCTGCGAGCTGTGACGTGCCGGAGGTGGAGCAACTCATCC
GAAAATCGATGGCCAAGGAAGAGTCATTTCATTGCTGGGATATGGATGCC
AAGTTGGCTTATGCCAAGAAGCCGGAGCTTAAAACCAATTTCTTTGATAG
TGGAGCTGTGCAAATTTTTTTTGTAGTGTTAGGTGTGACCCTACTATTGA
CCCTCGCGGCCACCAGTGGTCTGGGCAAATACTCACGCATCCTGGCCTGC
TTTGATTTCGCCGACAACTGGCGACTGGCCTGGAAGCCGGTGAATCCCAG
CCAGGAGAACAGACCCGTCAACGGACTGAGGGTGCTCACCGCCTTCTCAT
TGATTGGCGTCCATGTGATCTGGTACAAGTACTTCTCCGTGGATCCCTCG
GTCGAGATGCTCGGCAAGTTGTCGTCCATGACCATGCGGCATACCTACTG
GCCCACCATGGTGGAGATCTTTTTTGTGGTCAGTGGCTACTTGACGGTTT
TGAATTTCATCAGGGATGAACAACTGCAAAAGGATATCGCCAGCGATGGA
ATCCTGGGTAACATGCGTCGCTACCTCAGAGAGTTCATCCATCGATACTG
CCGGCTGGCTCCGCTGCAATTCGTGATCGTTCTGATGGGCGTGGTGGTTA
TAGAGTATCAGCGTCAAGTGTCCGTCATGCAAATAACCGATCCGCAGGAC
GAGCTGTGCCGACTCAATGCCGTACGCAACGTTTTCTTCATCCAGAATTT
GTTTCCCATTCAGTTTATGTGCGGATCGTGGACCTGGTCGCTGGGCTGCG
ACATGCAGCTCCACATGACGGCGATGCTGCTGCTCTTCATGCACACCAAG
CACCCAAACATGGTCAAGTGGATAGTCCGCCTGCTGGTAGTGATCAGCGC
TTTGTTTTCGATTGTCTTCATGGAGGTCAACGAGGTAGGCGCCAATTTCG
AGGAGATGTATCACACCAACGAGTGGTCGTACATGAGTCCGTTGATCCGC
ATGCTCGCCTACATAATAGGTGGCTCCTATGCCTTCTTCCAAGTCAAGGG
TACGGGCACTCCCTTTGATTTGGTAATGCCTAATTGGTGGATCAGACTGG
GGGCCATTGCGTGCATTGGCTGGCTGGCAAGGCAAGTGACCATGGATCAA
CTGCCGGCCATCAGTATCATTCTCAGCTTCATGGTCGTTCTGCGGATTCT
GGTGAGCACGGCGGCCAGCCACCTCATCATTTGCGGCACCAAGCCGGACA
ACAGCGACTCATATGCTCCTACCCGCTGGCTGCTGGCGCTCCTGCAGTCG
GAGCAAGTGCAGCGGATCAGCAAGTTCACCTACGCCATCTACCTATTGAA
TCCGATTGTAATCATGTACGTCTACCACTCCTTTAGCAATGAAGTGTATC
CGGACAACACCATGATGATAATGCTGGCTATCTCCTGTTCAGTGGTCTGT
TACCTTTGGGCCATAGTAATGACGGTGCTCTTCGAGATTCCTTTCAATCG
GCTGACCAGTGTGATGATTAATTCTAGATCCTCTCCAGCAAAAAAGAAAA
GCCAGTAAAAGCTTTCTAGACCAT
BS12054.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:16:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12990-RA | 1992 | CG12990-PA | 1..1992 | 17..2008 | 9960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:16:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12990-RA | 2330 | CG12990-RA | 58..2051 | 16..2009 | 9970 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:16:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17669699..17670635 | 1867..931 | 4685 | 100 | Minus |
| X | 23542271 | X | 17670739..17671464 | 933..208 | 3630 | 100 | Minus |
| X | 23542271 | X | 17671638..17671831 | 209..16 | 970 | 100 | Minus |
| X | 23542271 | X | 17669487..17669629 | 2009..1867 | 715 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:16:23 has no hits.
BS12054.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:47:42 Download gff for
BS12054.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12990-RA | 59..2048 | 17..2006 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:10:17 Download gff for
BS12054.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12990-RA | 59..2048 | 17..2006 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:19:57 Download gff for
BS12054.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12990-RA | 59..2048 | 17..2006 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:07:51 Download gff for
BS12054.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12990-RA | 59..2048 | 17..2006 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:07:51 Download gff for
BS12054.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17671638..17671830 | 17..209 | 100 | | Minus |
| X | 17669490..17669628 | 1868..2006 | 100 | <- | Minus |
| X | 17669699..17670632 | 934..1867 | 100 | <- | Minus |
| X | 17670739..17671462 | 210..933 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:10:17 Download gff for
BS12054.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17563523..17563661 | 1868..2006 | 100 | <- | Minus |
| arm_X | 17563732..17564665 | 934..1867 | 100 | <- | Minus |
| arm_X | 17564772..17565495 | 210..933 | 100 | <- | Minus |
| arm_X | 17565671..17565863 | 17..209 | 100 | | Minus |
BS12054.pep Sequence
Translation from 16 to 2007
> BS12054.pep
MLLVLLLLQIIAALGDVDNCEPKSLAKDLIEMVPQRENTTLSKCEEQLLE
LRRAWQDHQSWALKAIDASGEGYANFMMGQRAWLGNRFTCRAVNEPMLQD
MTIKNQRLLREMSPIQFHYLVAYIESNSPWQLEVTIKANPLLHIGLCLPA
SCDVPEVEQLIRKSMAKEESFHCWDMDAKLAYAKKPELKTNFFDSGAVQI
FFVVLGVTLLLTLAATSGLGKYSRILACFDFADNWRLAWKPVNPSQENRP
VNGLRVLTAFSLIGVHVIWYKYFSVDPSVEMLGKLSSMTMRHTYWPTMVE
IFFVVSGYLTVLNFIRDEQLQKDIASDGILGNMRRYLREFIHRYCRLAPL
QFVIVLMGVVVIEYQRQVSVMQITDPQDELCRLNAVRNVFFIQNLFPIQF
MCGSWTWSLGCDMQLHMTAMLLLFMHTKHPNMVKWIVRLLVVISALFSIV
FMEVNEVGANFEEMYHTNEWSYMSPLIRMLAYIIGGSYAFFQVKGTGTPF
DLVMPNWWIRLGAIACIGWLARQVTMDQLPAISIILSFMVVLRILVSTAA
SHLIICGTKPDNSDSYAPTRWLLALLQSEQVQRISKFTYAIYLLNPIVIM
YVYHSFSNEVYPDNTMMIMLAISCSVVCYLWAIVMTVLFEIPFNRLTSVM
INSRSSPAKKKSQ*
BS12054.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:09:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12990-PA | 663 | CG12990-PA | 1..663 | 1..663 | 3466 | 100 | Plus |
| CG30471-PB | 735 | CG30471-PB | 83..731 | 37..654 | 777 | 29.1 | Plus |
| CG11353-PB | 754 | CG11353-PB | 96..751 | 37..657 | 748 | 29.3 | Plus |
| CG11353-PA | 754 | CG11353-PA | 96..751 | 37..657 | 748 | 29.3 | Plus |
| drd-PA | 827 | CG33968-PA | 154..789 | 44..659 | 254 | 21.5 | Plus |
