BS12055.complete Sequence
2186 bp assembled on 2009-12-07
GenBank Submission: KX803888
> BS12055.complete
GAAGTTATCAGTCGACATGGATTTTAATAATGACTTATCGCCTATTGATA
TTTTGACATTTATAACAGATGAACTGTTGCAAGCATACAAAAGCAGTAAA
GGAGAAAATGAAAAGGCTGGGACAATTGTCAAGTTTCTTGACCGATGGAA
TGACGATATCTCCATTGCAAAACTCAAGGATCTCACTGTTGAATTTGAAT
CAGATTTAGAGTGGTTCAATGTAAGTTGCCCCTTATCGATAAAAGGACTG
CAAGGAAAAGTTATCATATTAGACTTTTTCACATATTGCTGCATTAATTG
TATGCATGTGCTGCAAGAGTTGCACTTATTGGAAGAACGCTTTCCAATAG
AAAGTGGTGTTGTAGTAATCGGTGTTCACAGTCCTAAGTTTGAAAATGAA
CGCAATGCGGCAAACATTCTGTCCGCTGTACAACGATATGGAATATCACA
TCCCATTGTCAATGATTCACGATCTGGAATGTGGCGCGCTCTTGGAATTC
GTTGCTGGCCTTCTCTTTTGATTCTAAGCCCGACTGGTGTTCCGATGATG
TTATTAATGGGTGAAGGGCATGGAAAATTCCTACAGGATTTTTTTTCTTC
TGCCCTATCGTATTTTAGCCGTCAGGGTATAATTGACCATAGGGGTTTAC
CTTTAAAATTATTTAATGACTTTCAACCAGCATCTAACTTGCGTTTTCCC
GCAAAGATTGTTCAAGGCCCTAATGGCCTGTATGCTATTGCTGATACGGG
GAACAACAGGGTGCTTGTGCTTACAGCAGGCGGTGTGGTACAGCACAGAA
TTGGAGGACACCAGCCTGGTTTCGTGGATGGAGACCTAACAGTGGCACGG
TTTAATAATCCTCAAGGCATTGCGTTTCTTAATGAAAACGTTTTGATTGT
AGCGGACACTAAAAACCACGCCATTCGTCAGATCTCTCTAACAAATGCAA
TGGTGGAAACTCTTGCTGGCACAGGAATTCAGGGAAATGATCGAATAGGT
GGACGTCTAGGACCATTGCAACCACTGTCGTCACCGTGGGATGTTGCCAT
ATTTCGAACGAGGGACATGGATATGTCCTTTCATCTTGATGAACGTAACA
TACCAGAAAAAACAATTATCCTTATATCCATGGCAGGCACCCACCAGATT
TGGGGCTATTTTCCCGAAGGAATTATTTGGTGGAAATTTCGTAAATTTGA
GCCTTGTTGCTGTGTCTCACTAATAGGAAATGGTTTGGAAGAGAACCGTA
ATAATTCTTACCCACAGAACGCTGCATTCGCACAGCCATCTGGCCTGGCC
ATAGCGGGAGACGTTTTATATATAGCTGACAGCGAAAGCTCTAGCATACG
CAAAGCTTCTATGATAGATGGAAAGGTTATGCCTGTCGTCGGAGGAGATC
GAAACCCACTTAATTTATTTGCATTTGGCGACATTGACGGTAGACTATTC
AGCGCGAAACTCCAACATCCGTTAGGAGTGACTTTCAATGATACCAATAA
CAAACTCTATGTTGCTGATACCTATAATCATAAAATCAAAATTATTGACA
TCGATTCAAATGATATATCTACTCTACAAATTAAGAGCCAAGAAAATACT
AACCTGATTTTAAACGAGCCCGCCGGACTGTGCTTGGATGCCAGCGGACG
GAATTTGTTGGTAGCTGATACCAATAACCATTCAATACATACAATAGATT
TGGTAACGCTTATAGCACAACCGTTTGGCTTAGATTTCAGACAAATAGCG
TCCGCTAGTGAAATTGATGCGCCACAAGATACACAAAAGCCTACGGAAAA
TAATATAGTTAAAGCATTGCCTCTTGATTTAATTAAACCAAGTAAAATTT
TTTTTAACCTTCGGCTTTCGCCCAGATTTAACTTTACAAAGGAAGCTCCT
CAAAAATGGATAGTGAAAACTGTATGTCAATCTGTAATAGTAAATCCAAC
GTGCGGAAATCTACTTGATGGGATGTGCCACATGCAGGTGCAGGCTACTA
GGCCTGATTTTATGTGTGAAAGCAGTCAAATATTTACCATCGAATTCGTA
TTAAATTTATGCCTTTCAAATTGTTGCCTAGTAAAAAAAATCACGGTTTC
TATAAAACGCGATGACATACAAGAAGAATATATATCCATCCACAACGTAA
ATATTGACATTGAACAATAAAAGCTTTCTAGACCAT
BS12055.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:16:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12547-RB | 2154 | CG12547-PB | 1..2154 | 17..2170 | 10770 | 100 | Plus |
| CG12547-RA | 2154 | CG12547-PA | 1..2154 | 17..2170 | 10770 | 100 | Plus |
| CG12547-RC | 1869 | CG12547-PC | 1..1869 | 302..2170 | 9345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:16:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12547-RB | 2672 | CG12547-RB | 57..2212 | 17..2172 | 10780 | 100 | Plus |
| CG12547-RA | 2225 | CG12547-RA | 57..2212 | 17..2172 | 10780 | 100 | Plus |
| CG12547-RC | 2322 | CG12547-RC | 204..2309 | 67..2172 | 10530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:16:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 4787138..4788349 | 1411..200 | 6060 | 100 | Minus |
| 2R | 25286936 | 2R | 4786315..4787075 | 2172..1412 | 3805 | 100 | Minus |
| 2R | 25286936 | 2R | 4788400..4788586 | 203..17 | 935 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 02:16:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tabor | 7345 | Tabor TABOR 7345bp | 6295..6332 | 59..22 | 118 | 78.9 | Minus |
BS12055.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:47:41 Download gff for
BS12055.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12547-RA | 53..2198 | 17..2162 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:10:15 Download gff for
BS12055.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12547-RA | 57..2202 | 17..2162 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:16:39 Download gff for
BS12055.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12547-RA | 53..2198 | 17..2162 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:07:49 Download gff for
BS12055.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12547-RA | 57..2202 | 17..2162 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:07:49 Download gff for
BS12055.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 4786325..4787075 | 1412..2162 | 100 | <- | Minus |
| 2R | 4787138..4788345 | 204..1411 | 100 | <- | Minus |
| 2R | 4788400..4788586 | 17..203 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:10:15 Download gff for
BS12055.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 673830..674580 | 1412..2162 | 100 | <- | Minus |
| arm_2R | 674643..675850 | 204..1411 | 100 | <- | Minus |
| arm_2R | 675905..676091 | 17..203 | 100 | | Minus |
BS12055.pep Sequence
Translation from 16 to 2169
> BS12055.pep
MDFNNDLSPIDILTFITDELLQAYKSSKGENEKAGTIVKFLDRWNDDISI
AKLKDLTVEFESDLEWFNVSCPLSIKGLQGKVIILDFFTYCCINCMHVLQ
ELHLLEERFPIESGVVVIGVHSPKFENERNAANILSAVQRYGISHPIVND
SRSGMWRALGIRCWPSLLILSPTGVPMMLLMGEGHGKFLQDFFSSALSYF
SRQGIIDHRGLPLKLFNDFQPASNLRFPAKIVQGPNGLYAIADTGNNRVL
VLTAGGVVQHRIGGHQPGFVDGDLTVARFNNPQGIAFLNENVLIVADTKN
HAIRQISLTNAMVETLAGTGIQGNDRIGGRLGPLQPLSSPWDVAIFRTRD
MDMSFHLDERNIPEKTIILISMAGTHQIWGYFPEGIIWWKFRKFEPCCCV
SLIGNGLEENRNNSYPQNAAFAQPSGLAIAGDVLYIADSESSSIRKASMI
DGKVMPVVGGDRNPLNLFAFGDIDGRLFSAKLQHPLGVTFNDTNNKLYVA
DTYNHKIKIIDIDSNDISTLQIKSQENTNLILNEPAGLCLDASGRNLLVA
DTNNHSIHTIDLVTLIAQPFGLDFRQIASASEIDAPQDTQKPTENNIVKA
LPLDLIKPSKIFFNLRLSPRFNFTKEAPQKWIVKTVCQSVIVNPTCGNLL
DGMCHMQVQATRPDFMCESSQIFTIEFVLNLCLSNCCLVKKITVSIKRDD
IQEEYISIHNVNIDIEQ*
BS12055.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:09:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12547-PB | 717 | CG12547-PB | 1..717 | 1..717 | 3758 | 100 | Plus |
| CG12547-PA | 717 | CG12547-PA | 1..717 | 1..717 | 3758 | 100 | Plus |
| CG12547-PC | 622 | CG12547-PC | 1..622 | 96..717 | 3255 | 100 | Plus |
