Clone Sequence Records
BS12056.5prime Sequence
657 bp (657 high quality bases) assembled on 2006-06-16
> BS12056.5prime
GAAGTTATCAGTCGACATGAGCGCCACGGATGACTTCCAGAGCTGGCTCA
ACGAGCAGCTGCGCAAATTGAACACCGACGAGAACGTTTTCGGTTCGTAT
ATTATTGGAATTTTGGAGGGCGACGAAACGACAGATGAAAAAACCGAGGC
TCTCGAGGGAATTCTCAGCGAAACAGGTTCCGCCAACATTGACGAACTGG
TGGCCACCATACTACAAAAGTGGCTACAGAGCCATCCCAGCGCCGATGAT
CCGCCGAAAAAAGGTCTGGATATCGATGTGAATGCCCAGTTGGCCAAGTT
GCTGGAGCAACAGAAGCTGCAACCCGCCGTAAACAAGGAGCGTGAATACA
CCGAAGAGGAGCGTCGCATCAAGCAGCAGATTCTAGCTCAATACTCCCAG
ACTGCCGTTGCCAACGAGGACGACGAGAATTCCGAGGCGGAAAGCGAGGA
TGACAGTGGAACGCTCACCAAGAATACCAACAAATCGGATGTCCAGGCGC
TAGCCAAGGAAAAGCGGGAGCAGGCCCGAATGGATAGTGCGGCCAAAAAG
CAAAAGGACAAAGAGGATCGGGAAAAGCAAAAGCAACTGCGCGAGGAAAA
GAAGGAGAAACGCAAAACCGTCAAAGGCGAACGGCGTCGATAAAAGCTTT
CTAGACC
BS12056.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:27:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9586-PB | 627 | CG9586-RB | 1..627 | 17..643 | 3135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:34:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9586-RB | 936 | CG9586-RB | 130..757 | 16..643 | 3140 | 100 | Plus |
CG9586-RC | 966 | CG9586-RC | 130..514 | 16..400 | 1925 | 100 | Plus |
CG9586-RC | 966 | CG9586-RC | 542..787 | 398..643 | 1230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:34:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9165600..9165845 | 643..398 | 1230 | 100 | Minus |
2L | 23513712 | 2L | 9165943..9166164 | 400..179 | 1110 | 100 | Minus |
2L | 23513712 | 2L | 9166223..9166385 | 178..16 | 815 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 06:34:20 has no hits.
BS12056.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:44 Download gff for
BS12056.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9586-PB | 1..627 | 17..643 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:29:05 Download gff for
BS12056.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9586-RB | 124..757 | 10..643 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:37:34 Download gff for
BS12056.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9586-RB | 124..757 | 10..643 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:37:34 Download gff for
BS12056.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9165600..9165842 | 401..643 | 100 | <- | Minus |
2L | 9165943..9166164 | 179..400 | 100 | <- | Minus |
2L | 9166223..9166391 | 10..178 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:29:05 Download gff for
BS12056.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9165600..9165842 | 401..643 | 100 | <- | Minus |
arm_2L | 9165943..9166164 | 179..400 | 100 | <- | Minus |
arm_2L | 9166223..9166391 | 10..178 | 98 | | Minus |
BS12056.3prime Sequence
657 bp (657 high quality bases) assembled on 2006-06-16
> BS12056.3prime
ATGGTCTAGAAAGCTTTTATCGACGCCGTTCGCCTTTGACGGTTTTGCGT
TTCTCCTTCTTTTCCTCGCGCAGTTGCTTTTGCTTTTCCCGATCCTCTTT
GTCCTTTTGCTTTTTGGCCGCACTATCCATTCGGGCCTGCTCCCGCTTTT
CCTTGGCTAGCGCCTGGACATCCGATTTGTTGGTATTCTTGGTGAGCGTT
CCACTGTCATCCTCGCTTTCCGCCTCGGAATTCTCGTCGTCCTCGTTGGC
AACGGCAGTCTGGGAGTATTGAGCTAGAATCTGCTGCTTGATGCGACGCT
CCTCTTCGGTGTATTCACGCTCCTTGTTTACGGCGGGTTGCAGCTTCTGT
TGCTCCAGCAACTTGGCCAACTGGGCATTCACATCGATATCCAGACCTTT
TTTCGGCGGATCATCGGCGCTGGGATGGCTCTGTAGCCACTTTTGTAGTA
TGGTGGCCACCAGTTCGTCAATGTTGGCGGAACCTGTTTCGCTGAGAATT
CCCTCGAGAGCCTCGGTTTTTTCATCTGTCGTTTCGTCGCCCTCCAAAAT
TCCAATAATATACGAACCGAAAACGTTCTCGTCGGTGTTCAATTTGCGCA
GCTGCTCGTTGAGCCAGCTCTGGAAGTCATCCGTGGCGCTCATGTCGACT
GATAACT
BS12056.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:27:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9586-PB | 627 | CG9586-RB | 1..627 | 643..17 | 3135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:41:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9586-RB | 936 | CG9586-RB | 130..757 | 644..17 | 3140 | 100 | Minus |
CG9586-RC | 966 | CG9586-RC | 130..514 | 644..260 | 1925 | 100 | Minus |
CG9586-RC | 966 | CG9586-RC | 542..787 | 262..17 | 1230 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:41:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9165600..9165845 | 17..262 | 1230 | 100 | Plus |
2L | 23513712 | 2L | 9165943..9166164 | 260..481 | 1110 | 100 | Plus |
2L | 23513712 | 2L | 9166223..9166385 | 482..644 | 815 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:41:21 has no hits.
BS12056.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:44 Download gff for
BS12056.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9586-PB | 1..627 | 17..643 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:40:24 Download gff for
BS12056.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9586-RB | 124..757 | 17..650 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:51:03 Download gff for
BS12056.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9586-RB | 124..757 | 17..650 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:51:03 Download gff for
BS12056.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9165600..9165842 | 17..259 | 100 | <- | Plus |
2L | 9165943..9166164 | 260..481 | 100 | <- | Plus |
2L | 9166223..9166391 | 482..650 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:40:24 Download gff for
BS12056.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9165600..9165842 | 17..259 | 100 | <- | Plus |
arm_2L | 9165943..9166164 | 260..481 | 100 | <- | Plus |
arm_2L | 9166223..9166391 | 482..650 | 98 | | Plus |
BS12056.complete Sequence
659 bp assembled on 2006-11-01
GenBank Submission: FJ637050
> BS12056.complete
GAAGTTATCAGTCGACATGAGCGCCACGGATGACTTCCAGAGCTGGCTCA
ACGAGCAGCTGCGCAAATTGAACACCGACGAGAACGTTTTCGGTTCGTAT
ATTATTGGAATTTTGGAGGGCGACGAAACGACAGATGAAAAAACCGAGGC
TCTCGAGGGAATTCTCAGCGAAACAGGTTCCGCCAACATTGACGAACTGG
TGGCCACCATACTACAAAAGTGGCTACAGAGCCATCCCAGCGCCGATGAT
CCGCCGAAAAAAGGTCTGGATATCGATGTGAATGCCCAGTTGGCCAAGTT
GCTGGAGCAACAGAAGCTGCAACCCGCCGTAAACAAGGAGCGTGAATACA
CCGAAGAGGAGCGTCGCATCAAGCAGCAGATTCTAGCTCAATACTCCCAG
ACTGCCGTTGCCAACGAGGACGACGAGAATTCCGAGGCGGAAAGCGAGGA
TGACAGTGGAACGCTCACCAAGAATACCAACAAATCGGATGTCCAGGCGC
TAGCCAAGGAAAAGCGGGAGCAGGCCCGAATGGATAGTGCGGCCAAAAAG
CAAAAGGACAAAGAGGATCGGGAAAAGCAAAAGCAACTGCGCGAGGAAAA
GAAGGAGAAACGCAAAACCGTCAAAGGCGAACGGCGTCGATAAAAGCTTT
CTAGACCAT
BS12056.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:47:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9586-RB | 627 | CG9586-PB | 1..627 | 17..643 | 3135 | 100 | Plus |
CG9586-RC | 657 | CG9586-PC | 1..384 | 17..400 | 1920 | 100 | Plus |
CG9586-RC | 657 | CG9586-PC | 412..657 | 398..643 | 1230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:47:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9586-RB | 936 | CG9586-RB | 130..757 | 16..643 | 3140 | 100 | Plus |
CG9586-RC | 966 | CG9586-RC | 130..514 | 16..400 | 1925 | 100 | Plus |
CG9586-RC | 966 | CG9586-RC | 542..787 | 398..643 | 1230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:47:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9165600..9165845 | 643..398 | 1230 | 100 | Minus |
2L | 23513712 | 2L | 9165943..9166164 | 400..179 | 1110 | 100 | Minus |
2L | 23513712 | 2L | 9166223..9166385 | 178..16 | 815 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:47:23 has no hits.
BS12056.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:47:36 Download gff for
BS12056.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9586-RB | 1..627 | 17..643 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:58:55 Download gff for
BS12056.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9586-RB | 55..688 | 10..643 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:22:49 Download gff for
BS12056.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9586-RB | 131..755 | 17..641 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:47:36 Download gff for
BS12056.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9586-RB | 55..688 | 10..643 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:16:58 Download gff for
BS12056.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9586-RB | 131..755 | 17..641 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:16:58 Download gff for
BS12056.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9165602..9165842 | 401..641 | 100 | <- | Minus |
2L | 9165943..9166164 | 179..400 | 100 | <- | Minus |
2L | 9166223..9166384 | 17..178 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:22:49 Download gff for
BS12056.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9165602..9165842 | 401..641 | 100 | <- | Minus |
arm_2L | 9165943..9166164 | 179..400 | 100 | <- | Minus |
arm_2L | 9166223..9166384 | 17..178 | 100 | | Minus |
BS12056.pep Sequence
Translation from 16 to 642
> BS12056.pep
MSATDDFQSWLNEQLRKLNTDENVFGSYIIGILEGDETTDEKTEALEGIL
SETGSANIDELVATILQKWLQSHPSADDPPKKGLDIDVNAQLAKLLEQQK
LQPAVNKEREYTEEERRIKQQILAQYSQTAVANEDDENSEAESEDDSGTL
TKNTNKSDVQALAKEKREQARMDSAAKKQKDKEDREKQKQLREEKKEKRK
TVKGERRR*
BS12056.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:26:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9586-PB | 208 | CG9586-PB | 1..208 | 1..208 | 1043 | 100 | Plus |
CG9586-PC | 218 | CG9586-PC | 1..218 | 1..208 | 1022 | 95.4 | Plus |