Clone BS12056 Report

Search the DGRC for BS12056

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:120
Well:56
Vector:pDNR-Dual
Associated Gene/TranscriptCG9586-RB
Protein status:BS12056.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12056.5prime Sequence

657 bp (657 high quality bases) assembled on 2006-06-16

> BS12056.5prime
GAAGTTATCAGTCGACATGAGCGCCACGGATGACTTCCAGAGCTGGCTCA
ACGAGCAGCTGCGCAAATTGAACACCGACGAGAACGTTTTCGGTTCGTAT
ATTATTGGAATTTTGGAGGGCGACGAAACGACAGATGAAAAAACCGAGGC
TCTCGAGGGAATTCTCAGCGAAACAGGTTCCGCCAACATTGACGAACTGG
TGGCCACCATACTACAAAAGTGGCTACAGAGCCATCCCAGCGCCGATGAT
CCGCCGAAAAAAGGTCTGGATATCGATGTGAATGCCCAGTTGGCCAAGTT
GCTGGAGCAACAGAAGCTGCAACCCGCCGTAAACAAGGAGCGTGAATACA
CCGAAGAGGAGCGTCGCATCAAGCAGCAGATTCTAGCTCAATACTCCCAG
ACTGCCGTTGCCAACGAGGACGACGAGAATTCCGAGGCGGAAAGCGAGGA
TGACAGTGGAACGCTCACCAAGAATACCAACAAATCGGATGTCCAGGCGC
TAGCCAAGGAAAAGCGGGAGCAGGCCCGAATGGATAGTGCGGCCAAAAAG
CAAAAGGACAAAGAGGATCGGGAAAAGCAAAAGCAACTGCGCGAGGAAAA
GAAGGAGAAACGCAAAACCGTCAAAGGCGAACGGCGTCGATAAAAGCTTT
CTAGACC

BS12056.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:27:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG9586-PB 627 CG9586-RB 1..627 17..643 3135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:34:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG9586-RB 936 CG9586-RB 130..757 16..643 3140 100 Plus
CG9586-RC 966 CG9586-RC 130..514 16..400 1925 100 Plus
CG9586-RC 966 CG9586-RC 542..787 398..643 1230 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:34:17
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9165600..9165845 643..398 1230 100 Minus
2L 23513712 2L 9165943..9166164 400..179 1110 100 Minus
2L 23513712 2L 9166223..9166385 178..16 815 100 Minus
Blast to na_te.dros performed on 2015-02-03 06:34:20 has no hits.

BS12056.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:44 Download gff for BS12056.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9586-PB 1..627 17..643 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:29:05 Download gff for BS12056.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9586-RB 124..757 10..643 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:37:34 Download gff for BS12056.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9586-RB 124..757 10..643 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:37:34 Download gff for BS12056.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 9165600..9165842 401..643 100 <- Minus
2L 9165943..9166164 179..400 100 <- Minus
2L 9166223..9166391 10..178 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:29:05 Download gff for BS12056.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9165600..9165842 401..643 100 <- Minus
arm_2L 9165943..9166164 179..400 100 <- Minus
arm_2L 9166223..9166391 10..178 98   Minus

BS12056.3prime Sequence

657 bp (657 high quality bases) assembled on 2006-06-16

> BS12056.3prime
ATGGTCTAGAAAGCTTTTATCGACGCCGTTCGCCTTTGACGGTTTTGCGT
TTCTCCTTCTTTTCCTCGCGCAGTTGCTTTTGCTTTTCCCGATCCTCTTT
GTCCTTTTGCTTTTTGGCCGCACTATCCATTCGGGCCTGCTCCCGCTTTT
CCTTGGCTAGCGCCTGGACATCCGATTTGTTGGTATTCTTGGTGAGCGTT
CCACTGTCATCCTCGCTTTCCGCCTCGGAATTCTCGTCGTCCTCGTTGGC
AACGGCAGTCTGGGAGTATTGAGCTAGAATCTGCTGCTTGATGCGACGCT
CCTCTTCGGTGTATTCACGCTCCTTGTTTACGGCGGGTTGCAGCTTCTGT
TGCTCCAGCAACTTGGCCAACTGGGCATTCACATCGATATCCAGACCTTT
TTTCGGCGGATCATCGGCGCTGGGATGGCTCTGTAGCCACTTTTGTAGTA
TGGTGGCCACCAGTTCGTCAATGTTGGCGGAACCTGTTTCGCTGAGAATT
CCCTCGAGAGCCTCGGTTTTTTCATCTGTCGTTTCGTCGCCCTCCAAAAT
TCCAATAATATACGAACCGAAAACGTTCTCGTCGGTGTTCAATTTGCGCA
GCTGCTCGTTGAGCCAGCTCTGGAAGTCATCCGTGGCGCTCATGTCGACT
GATAACT

BS12056.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:27:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG9586-PB 627 CG9586-RB 1..627 643..17 3135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:41:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG9586-RB 936 CG9586-RB 130..757 644..17 3140 100 Minus
CG9586-RC 966 CG9586-RC 130..514 644..260 1925 100 Minus
CG9586-RC 966 CG9586-RC 542..787 262..17 1230 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:41:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9165600..9165845 17..262 1230 100 Plus
2L 23513712 2L 9165943..9166164 260..481 1110 100 Plus
2L 23513712 2L 9166223..9166385 482..644 815 100 Plus
Blast to na_te.dros performed on 2015-02-12 17:41:21 has no hits.

BS12056.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:44 Download gff for BS12056.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9586-PB 1..627 17..643 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:40:24 Download gff for BS12056.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9586-RB 124..757 17..650 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:51:03 Download gff for BS12056.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9586-RB 124..757 17..650 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:51:03 Download gff for BS12056.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 9165600..9165842 17..259 100 <- Plus
2L 9165943..9166164 260..481 100 <- Plus
2L 9166223..9166391 482..650 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:40:24 Download gff for BS12056.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9165600..9165842 17..259 100 <- Plus
arm_2L 9165943..9166164 260..481 100 <- Plus
arm_2L 9166223..9166391 482..650 98   Plus

BS12056.complete Sequence

659 bp assembled on 2006-11-01

GenBank Submission: FJ637050

> BS12056.complete
GAAGTTATCAGTCGACATGAGCGCCACGGATGACTTCCAGAGCTGGCTCA
ACGAGCAGCTGCGCAAATTGAACACCGACGAGAACGTTTTCGGTTCGTAT
ATTATTGGAATTTTGGAGGGCGACGAAACGACAGATGAAAAAACCGAGGC
TCTCGAGGGAATTCTCAGCGAAACAGGTTCCGCCAACATTGACGAACTGG
TGGCCACCATACTACAAAAGTGGCTACAGAGCCATCCCAGCGCCGATGAT
CCGCCGAAAAAAGGTCTGGATATCGATGTGAATGCCCAGTTGGCCAAGTT
GCTGGAGCAACAGAAGCTGCAACCCGCCGTAAACAAGGAGCGTGAATACA
CCGAAGAGGAGCGTCGCATCAAGCAGCAGATTCTAGCTCAATACTCCCAG
ACTGCCGTTGCCAACGAGGACGACGAGAATTCCGAGGCGGAAAGCGAGGA
TGACAGTGGAACGCTCACCAAGAATACCAACAAATCGGATGTCCAGGCGC
TAGCCAAGGAAAAGCGGGAGCAGGCCCGAATGGATAGTGCGGCCAAAAAG
CAAAAGGACAAAGAGGATCGGGAAAAGCAAAAGCAACTGCGCGAGGAAAA
GAAGGAGAAACGCAAAACCGTCAAAGGCGAACGGCGTCGATAAAAGCTTT
CTAGACCAT

BS12056.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:47:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG9586-RB 627 CG9586-PB 1..627 17..643 3135 100 Plus
CG9586-RC 657 CG9586-PC 1..384 17..400 1920 100 Plus
CG9586-RC 657 CG9586-PC 412..657 398..643 1230 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:47:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG9586-RB 936 CG9586-RB 130..757 16..643 3140 100 Plus
CG9586-RC 966 CG9586-RC 130..514 16..400 1925 100 Plus
CG9586-RC 966 CG9586-RC 542..787 398..643 1230 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:47:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9165600..9165845 643..398 1230 100 Minus
2L 23513712 2L 9165943..9166164 400..179 1110 100 Minus
2L 23513712 2L 9166223..9166385 178..16 815 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:47:23 has no hits.

BS12056.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:47:36 Download gff for BS12056.complete
Subject Subject Range Query Range Percent Splice Strand
CG9586-RB 1..627 17..643 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:58:55 Download gff for BS12056.complete
Subject Subject Range Query Range Percent Splice Strand
CG9586-RB 55..688 10..643 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:22:49 Download gff for BS12056.complete
Subject Subject Range Query Range Percent Splice Strand
CG9586-RB 131..755 17..641 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:47:36 Download gff for BS12056.complete
Subject Subject Range Query Range Percent Splice Strand
CG9586-RB 55..688 10..643 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:16:58 Download gff for BS12056.complete
Subject Subject Range Query Range Percent Splice Strand
CG9586-RB 131..755 17..641 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:16:58 Download gff for BS12056.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9165602..9165842 401..641 100 <- Minus
2L 9165943..9166164 179..400 100 <- Minus
2L 9166223..9166384 17..178 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:22:49 Download gff for BS12056.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9165602..9165842 401..641 100 <- Minus
arm_2L 9165943..9166164 179..400 100 <- Minus
arm_2L 9166223..9166384 17..178 100   Minus

BS12056.pep Sequence

Translation from 16 to 642

> BS12056.pep
MSATDDFQSWLNEQLRKLNTDENVFGSYIIGILEGDETTDEKTEALEGIL
SETGSANIDELVATILQKWLQSHPSADDPPKKGLDIDVNAQLAKLLEQQK
LQPAVNKEREYTEEERRIKQQILAQYSQTAVANEDDENSEAESEDDSGTL
TKNTNKSDVQALAKEKREQARMDSAAKKQKDKEDREKQKQLREEKKEKRK
TVKGERRR*

BS12056.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:26:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG9586-PB 208 CG9586-PB 1..208 1..208 1043 100 Plus
CG9586-PC 218 CG9586-PC 1..218 1..208 1022 95.4 Plus