Clone BS12057 Report

Search the DGRC for BS12057

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:120
Well:57
Vector:pDNR-Dual
Associated Gene/Transcriptqkr54B-RA
Protein status:BS12057.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12057.complete Sequence

1319 bp assembled on 2006-11-01

GenBank Submission: FJ637051

> BS12057.complete
GAAGTTATCAGTCGACATGACCGAGAAGTACGACGGCAACGGTGACTTTT
CCGCTTTCAACGACGATGACAACGATTTTGGCGGCAAGCCTCGCAAGCCT
GGTGGATCTATTGGAGCACCAGGTGGCGCCCACAATGGCGACGCTTCCGC
CCACGATCACGGCCATCATGGAGGAGATCCCGGCGGCAATGTCCAAATAA
ACGAGAAAGCCAATGAGTACATACGCGATTGTATGGCGGAAAGAAATCGA
ATGGACAGGAAGTTTCCCATTGCCGAGAAACTGCTGGAAGGCGAGATAGA
AAAGGTCCAGACCACAGGAAGGATTCCTTCCAGAGAGCAAAAGTATGCCG
ATATCTATAGAGAGAAGCCGCTGCGGATCTCGCAACGTGTTTTAGTTCCC
ATTAGAGAACATCCCAAGTTCAACTTCGTTGGAAAACTGCTGGGGCCCAA
GGGCAACTCCCTTCGCCGCCTTCAGGAGGAGACCCTTTGCAAGATGACCG
TCCTGGGCCGCAACTCTATGCGCGATCGAGTCAAAGAAGAGGAATTGCGC
AGCTCCAAGGATCCCAAGTACGCTCACCTCAACAGCGATCTGCATGTTGA
GATATCGACAATAGCGCCGCCCGCAGAAGCCTACGCCCGAATCGCCTACG
CCATGGCCGAGCTGAGAAAGTATTTGATCCCAGACAGTAACGACATTATC
CGACAGGAGCAGCTGCGCGAGCTGATGGACAGCACTAGCCTCAATGACAA
CGATAATGCCAAGAGTGGCTATAAGAAGACGTCTCACATGCAGGGAGGCA
ACAATGTCTTGGGTGGCGGCTCAATCAACCCGATTGGAGGGGTCAAGAAC
ACGCCGCATCACAGCTATAGGAGCTCACAGCCGTCATCTTTTAGTAAAAA
TGTTCTGGCTCCGAAGCAGAAAGTGATGTCCATATTGGAAAAAGCCAGGA
CGGCCATGGACGAAACCTATGGTCGGGGCTATGACGACGGACTTGGTTAT
GATCCCCACCAGTCGTACGATAGCTACTCCTATGGCACTCATGGACATGG
ACCCCATGGACCGCCAGCTAACATTCTGGGCGGAGTGGGCGGCATCAGCG
GTGGCGGTGGTCGGGGTGGGCACTACGAAAGCTCCGACTACGAGCCGGAT
TATGGAAGACGAGAATACTATCAGCATTCACCCGGCTATTCTGCTGGCGG
CGGCGGAGGTGTAGGTCTGGGCACTGGCGGCGCTTCTCAATCAAATGCCA
TCGGCGGCTCTGGTCTCAGTTCCAATCACAATCGCAGCCATGTTAACAGG
TGAAAGCTTTCTAGACCAT

BS12057.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:03:57
Subject Length Description Subject Range Query Range Score Percent Strand
qkr54B-RE 1854 CG4816-PE 1..1289 17..1305 6445 100 Plus
qkr54B-RD 1287 CG4816-PD 1..1287 17..1303 6435 100 Plus
qkr54B-RB 1287 CG4816-PB 1..1287 17..1303 6435 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:03:59
Subject Length Description Subject Range Query Range Score Percent Strand
qkr54B-RE 3963 CG4816-RE 127..1416 16..1305 6450 100 Plus
qkr54B-RD 3482 CG4816-RD 127..1416 16..1305 6450 100 Plus
qkr54B-RB 2551 CG4816-RB 492..1781 16..1305 6450 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:03:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17471170..17471624 417..871 2275 100 Plus
2R 25286936 2R 17470609..17470886 16..293 1390 100 Plus
2R 25286936 2R 17471854..17472075 972..1193 1110 100 Plus
2R 25286936 2R 17470941..17471066 293..418 630 100 Plus
2R 25286936 2R 17472131..17472247 1189..1305 570 99.1 Plus
2R 25286936 2R 17471691..17471795 868..972 525 100 Plus
2R 25286936 2R 22595151..22595289 417..555 305 81.3 Plus
2R 25286936 2R 21773807..21773943 417..553 280 80.3 Plus
2R 25286936 2R 22414765..22414958 606..413 280 76.3 Minus
2L 23513712 2L 20863636..20863772 553..417 265 79.6 Minus
2R 25286936 2R 22410917..22411053 553..417 250 78.8 Minus
2R 25286936 2R 22651051..22651189 417..555 230 77.7 Plus
2R 25286936 2R 22466682..22466776 417..511 190 80 Plus
Blast to na_te.dros performed on 2014-11-27 01:03:56 has no hits.

BS12057.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:46:57 Download gff for BS12057.complete
Subject Subject Range Query Range Percent Splice Strand
qkr54B-RB 1..1287 17..1303 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:22:07 Download gff for BS12057.complete
Subject Subject Range Query Range Percent Splice Strand
qkr54B-RB 54..1360 9..1319 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:43:53 Download gff for BS12057.complete
Subject Subject Range Query Range Percent Splice Strand
qkr54B-RB 493..1778 17..1302 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:46:57 Download gff for BS12057.complete
Subject Subject Range Query Range Percent Splice Strand
qkr54B-RB 54..1360 9..1319 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:17:38 Download gff for BS12057.complete
Subject Subject Range Query Range Percent Splice Strand
qkr54B-RB 493..1778 17..1302 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:17:38 Download gff for BS12057.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17470610..17470886 17..293 100 -> Plus
2R 17470942..17471066 294..418 100 -> Plus
2R 17471172..17471623 419..870 100 -> Plus
2R 17471694..17471795 871..972 100 -> Plus
2R 17471855..17472075 973..1193 100 -> Plus
2R 17472136..17472244 1194..1302 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:43:53 Download gff for BS12057.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13358115..13358391 17..293 100 -> Plus
arm_2R 13358447..13358571 294..418 100 -> Plus
arm_2R 13358677..13359128 419..870 100 -> Plus
arm_2R 13359199..13359300 871..972 100 -> Plus
arm_2R 13359360..13359580 973..1193 100 -> Plus
arm_2R 13359641..13359749 1194..1302 100   Plus

BS12057.pep Sequence

Translation from 16 to 1302

> BS12057.pep
MTEKYDGNGDFSAFNDDDNDFGGKPRKPGGSIGAPGGAHNGDASAHDHGH
HGGDPGGNVQINEKANEYIRDCMAERNRMDRKFPIAEKLLEGEIEKVQTT
GRIPSREQKYADIYREKPLRISQRVLVPIREHPKFNFVGKLLGPKGNSLR
RLQEETLCKMTVLGRNSMRDRVKEEELRSSKDPKYAHLNSDLHVEISTIA
PPAEAYARIAYAMAELRKYLIPDSNDIIRQEQLRELMDSTSLNDNDNAKS
GYKKTSHMQGGNNVLGGGSINPIGGVKNTPHHSYRSSQPSSFSKNVLAPK
QKVMSILEKARTAMDETYGRGYDDGLGYDPHQSYDSYSYGTHGHGPHGPP
ANILGGVGGISGGGGRGGHYESSDYEPDYGRREYYQHSPGYSAGGGGGVG
LGTGGASQSNAIGGSGLSSNHNRSHVNR*

BS12057.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:32:12
Subject Length Description Subject Range Query Range Score Percent Strand
qkr54B-PE 617 CG4816-PE 1..428 1..428 2294 100 Plus
qkr54B-PD 428 CG4816-PD 1..428 1..428 2294 100 Plus
qkr54B-PB 428 CG4816-PB 1..428 1..428 2294 100 Plus
qkr54B-PA 428 CG4816-PA 1..428 1..428 2294 100 Plus
qkr58E-1-PA 396 CG3613-PA 9..374 14..425 730 43.4 Plus