BS12057.complete Sequence
1319 bp assembled on 2006-11-01
GenBank Submission: FJ637051
> BS12057.complete
GAAGTTATCAGTCGACATGACCGAGAAGTACGACGGCAACGGTGACTTTT
CCGCTTTCAACGACGATGACAACGATTTTGGCGGCAAGCCTCGCAAGCCT
GGTGGATCTATTGGAGCACCAGGTGGCGCCCACAATGGCGACGCTTCCGC
CCACGATCACGGCCATCATGGAGGAGATCCCGGCGGCAATGTCCAAATAA
ACGAGAAAGCCAATGAGTACATACGCGATTGTATGGCGGAAAGAAATCGA
ATGGACAGGAAGTTTCCCATTGCCGAGAAACTGCTGGAAGGCGAGATAGA
AAAGGTCCAGACCACAGGAAGGATTCCTTCCAGAGAGCAAAAGTATGCCG
ATATCTATAGAGAGAAGCCGCTGCGGATCTCGCAACGTGTTTTAGTTCCC
ATTAGAGAACATCCCAAGTTCAACTTCGTTGGAAAACTGCTGGGGCCCAA
GGGCAACTCCCTTCGCCGCCTTCAGGAGGAGACCCTTTGCAAGATGACCG
TCCTGGGCCGCAACTCTATGCGCGATCGAGTCAAAGAAGAGGAATTGCGC
AGCTCCAAGGATCCCAAGTACGCTCACCTCAACAGCGATCTGCATGTTGA
GATATCGACAATAGCGCCGCCCGCAGAAGCCTACGCCCGAATCGCCTACG
CCATGGCCGAGCTGAGAAAGTATTTGATCCCAGACAGTAACGACATTATC
CGACAGGAGCAGCTGCGCGAGCTGATGGACAGCACTAGCCTCAATGACAA
CGATAATGCCAAGAGTGGCTATAAGAAGACGTCTCACATGCAGGGAGGCA
ACAATGTCTTGGGTGGCGGCTCAATCAACCCGATTGGAGGGGTCAAGAAC
ACGCCGCATCACAGCTATAGGAGCTCACAGCCGTCATCTTTTAGTAAAAA
TGTTCTGGCTCCGAAGCAGAAAGTGATGTCCATATTGGAAAAAGCCAGGA
CGGCCATGGACGAAACCTATGGTCGGGGCTATGACGACGGACTTGGTTAT
GATCCCCACCAGTCGTACGATAGCTACTCCTATGGCACTCATGGACATGG
ACCCCATGGACCGCCAGCTAACATTCTGGGCGGAGTGGGCGGCATCAGCG
GTGGCGGTGGTCGGGGTGGGCACTACGAAAGCTCCGACTACGAGCCGGAT
TATGGAAGACGAGAATACTATCAGCATTCACCCGGCTATTCTGCTGGCGG
CGGCGGAGGTGTAGGTCTGGGCACTGGCGGCGCTTCTCAATCAAATGCCA
TCGGCGGCTCTGGTCTCAGTTCCAATCACAATCGCAGCCATGTTAACAGG
TGAAAGCTTTCTAGACCAT
BS12057.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:03:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
qkr54B-RE | 1854 | CG4816-PE | 1..1289 | 17..1305 | 6445 | 100 | Plus |
qkr54B-RD | 1287 | CG4816-PD | 1..1287 | 17..1303 | 6435 | 100 | Plus |
qkr54B-RB | 1287 | CG4816-PB | 1..1287 | 17..1303 | 6435 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:03:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
qkr54B-RE | 3963 | CG4816-RE | 127..1416 | 16..1305 | 6450 | 100 | Plus |
qkr54B-RD | 3482 | CG4816-RD | 127..1416 | 16..1305 | 6450 | 100 | Plus |
qkr54B-RB | 2551 | CG4816-RB | 492..1781 | 16..1305 | 6450 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:03:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17471170..17471624 | 417..871 | 2275 | 100 | Plus |
2R | 25286936 | 2R | 17470609..17470886 | 16..293 | 1390 | 100 | Plus |
2R | 25286936 | 2R | 17471854..17472075 | 972..1193 | 1110 | 100 | Plus |
2R | 25286936 | 2R | 17470941..17471066 | 293..418 | 630 | 100 | Plus |
2R | 25286936 | 2R | 17472131..17472247 | 1189..1305 | 570 | 99.1 | Plus |
2R | 25286936 | 2R | 17471691..17471795 | 868..972 | 525 | 100 | Plus |
2R | 25286936 | 2R | 22595151..22595289 | 417..555 | 305 | 81.3 | Plus |
2R | 25286936 | 2R | 21773807..21773943 | 417..553 | 280 | 80.3 | Plus |
2R | 25286936 | 2R | 22414765..22414958 | 606..413 | 280 | 76.3 | Minus |
2L | 23513712 | 2L | 20863636..20863772 | 553..417 | 265 | 79.6 | Minus |
2R | 25286936 | 2R | 22410917..22411053 | 553..417 | 250 | 78.8 | Minus |
2R | 25286936 | 2R | 22651051..22651189 | 417..555 | 230 | 77.7 | Plus |
2R | 25286936 | 2R | 22466682..22466776 | 417..511 | 190 | 80 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:03:56 has no hits.
BS12057.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:46:57 Download gff for
BS12057.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
qkr54B-RB | 1..1287 | 17..1303 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:22:07 Download gff for
BS12057.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
qkr54B-RB | 54..1360 | 9..1319 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:43:53 Download gff for
BS12057.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
qkr54B-RB | 493..1778 | 17..1302 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:46:57 Download gff for
BS12057.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
qkr54B-RB | 54..1360 | 9..1319 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:17:38 Download gff for
BS12057.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
qkr54B-RB | 493..1778 | 17..1302 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:17:38 Download gff for
BS12057.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17470610..17470886 | 17..293 | 100 | -> | Plus |
2R | 17470942..17471066 | 294..418 | 100 | -> | Plus |
2R | 17471172..17471623 | 419..870 | 100 | -> | Plus |
2R | 17471694..17471795 | 871..972 | 100 | -> | Plus |
2R | 17471855..17472075 | 973..1193 | 100 | -> | Plus |
2R | 17472136..17472244 | 1194..1302 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:43:53 Download gff for
BS12057.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13358115..13358391 | 17..293 | 100 | -> | Plus |
arm_2R | 13358447..13358571 | 294..418 | 100 | -> | Plus |
arm_2R | 13358677..13359128 | 419..870 | 100 | -> | Plus |
arm_2R | 13359199..13359300 | 871..972 | 100 | -> | Plus |
arm_2R | 13359360..13359580 | 973..1193 | 100 | -> | Plus |
arm_2R | 13359641..13359749 | 1194..1302 | 100 | | Plus |
BS12057.pep Sequence
Translation from 16 to 1302
> BS12057.pep
MTEKYDGNGDFSAFNDDDNDFGGKPRKPGGSIGAPGGAHNGDASAHDHGH
HGGDPGGNVQINEKANEYIRDCMAERNRMDRKFPIAEKLLEGEIEKVQTT
GRIPSREQKYADIYREKPLRISQRVLVPIREHPKFNFVGKLLGPKGNSLR
RLQEETLCKMTVLGRNSMRDRVKEEELRSSKDPKYAHLNSDLHVEISTIA
PPAEAYARIAYAMAELRKYLIPDSNDIIRQEQLRELMDSTSLNDNDNAKS
GYKKTSHMQGGNNVLGGGSINPIGGVKNTPHHSYRSSQPSSFSKNVLAPK
QKVMSILEKARTAMDETYGRGYDDGLGYDPHQSYDSYSYGTHGHGPHGPP
ANILGGVGGISGGGGRGGHYESSDYEPDYGRREYYQHSPGYSAGGGGGVG
LGTGGASQSNAIGGSGLSSNHNRSHVNR*
BS12057.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:32:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
qkr54B-PE | 617 | CG4816-PE | 1..428 | 1..428 | 2294 | 100 | Plus |
qkr54B-PD | 428 | CG4816-PD | 1..428 | 1..428 | 2294 | 100 | Plus |
qkr54B-PB | 428 | CG4816-PB | 1..428 | 1..428 | 2294 | 100 | Plus |
qkr54B-PA | 428 | CG4816-PA | 1..428 | 1..428 | 2294 | 100 | Plus |
qkr58E-1-PA | 396 | CG3613-PA | 9..374 | 14..425 | 730 | 43.4 | Plus |