BS12058.complete Sequence
1640 bp assembled on 2008-08-14
GenBank Submission: FJ637052
> BS12058.complete
GAAGTTATCAGTCGACATGGAAGACTATTGGGGTCTTAGCAGCACTACGG
ATATAAATTGCACTCAGCCCGCCATCGATGACTTCCCCCGAGACCTATTC
TCGGAGGCGCAAAGACAGTCTGGTGCTGTTGTACTTCATGTTATAGCCAG
TTTATATTTATTTGTAGCCTTAGCCGTAGTGTGTGATGAGTACTTTGTGC
CAGCAGTTGAGAAAATATGTGCAGCACTCAACATGTCCAATGATGTGGCG
GGTGCCACTTTCATGGCCGCGGCCACCTCCGCCCCAGAATTATTTGTCAA
CGTGATAGGAACCTTTATCACGGAGGGCGACATCGGAGTGGGCACGATTG
TCGGATCGGCGGTATTTAACATCCTGGCAGTGGCCGCGTGCTGCGGAATC
GGAGCTGGCATGACAATACCCTTGGACTGGTGGCCACTGACGCGGGACAG
CATCGCATACGGAGTTACAGTGGCCATTCTCATTTGTGTTATGCACGACG
AGCGCGTCGAGTGGTATGAGGCCCTCATCCTGGTCTCCCTGTATGCCGTC
TATCTTGCGGTCATGTATTTCGACAAAACTTTCCAAAAGTGCGCCAAAGG
TGGCGTTAAGCAGGCTCGTTCTCGCAGCCGGTCCTCCAACTGCAGCATAC
ATACAAAGAACAGCAATGAGAAGGAACCAGAGCTTGTGGAAAACCGCATT
TGCCAGAACATGGCGAACATACAGCTAAACGGAGGACTTAACAAAGAGCA
GGCCAAGGCCACAAGCACATCCGGAGCCGGTACCACCGCGATTTCGATAA
CCACCTCGACCATGACCACAACTTTGAGCACCACCCATAGTGCCGGAGGA
GGAGGTGGAGCAGTTGGTCTTTGTTCGGGACCAGGGGCCATTGTGCAGAT
GGCACCACTAGACGATGCCGAGGCAGAATCTCACGTGGCCGTAGCAGCCG
CTGACGAGGGCCGTAAGGAGGAGGGATACTCTCTGCTCTCATACCCGAAG
GATAAGAGCTGCTTTGCCCAGTTTACCTGGCTCATCATTTGGCCGATCCA
TCTGCTATTTCGCATTGCCATTCCTGACTGCAAGAAGGCCAAAAACAATA
AGATTTTCCCACTGACCTTTATCATGTGCATAGTTTGGATCGGATCGCTT
TCCTATGTAGTAGCGTGGATGATAACGATAATCGGAGACACACTAAAGAT
TCCTGACTCGGTGATGGGGATTACGTTCCTGGCAGCTGGTACCAGTGTCC
CTGAAGCGGTGTCTAGTGTTATTGTGGCGAAGCGCGGTCACGGATCAATG
GGAATCTGTAACTCTATTGGGTCAAACACTTTCGACATCCTGCTGTGCCT
GGGGGTTCCCTGGCTGATCAAAGCAGTATTTTTCCCGATCCAACCGGGCC
AAAACTACGTGGCCATAAACTCCGCCGGATTGGAGTACTCGGCGATCACT
TTGTTGTCGACACTGTTCCTGCTTTACCTGACCTTCTCCACAAACAAGTT
TAAGCTGGACAAGAAGGTGGGCACTGCCTGTCTGGTGATGTATCTGGTCT
TCATGGTTTTCGCCTCCCTCATCGAACTCAATGTGTTCTTCCGCGTCAAC
CTGCCCACCTGCGGTCGATCATGAAAGCTTTCTAGACCAT
BS12058.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:59:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| zyd-RE | 1608 | CG2893-PE | 1..1608 | 17..1624 | 8040 | 100 | Plus |
| zyd-RF | 1629 | CG2893-PF | 56..1629 | 51..1624 | 7870 | 100 | Plus |
| zyd-RA | 1581 | CG2893-PA | 8..1581 | 51..1624 | 7870 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:59:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| zyd-RE | 2006 | CG2893-RE | 82..1691 | 17..1626 | 8050 | 100 | Plus |
| zyd-RH | 2341 | CG2893-RH | 329..1905 | 50..1626 | 7885 | 100 | Plus |
| zyd-RF | 2094 | CG2893-RF | 83..1658 | 51..1626 | 7880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:59:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 23032743..23033250 | 678..1185 | 2540 | 100 | Plus |
| X | 23542271 | X | 23033701..23034041 | 1286..1626 | 1705 | 100 | Plus |
| X | 23542271 | X | 23030420..23030613 | 223..416 | 955 | 99.5 | Plus |
| X | 23542271 | X | 23030666..23030856 | 412..602 | 955 | 100 | Plus |
| X | 23542271 | X | 23030189..23030363 | 50..224 | 875 | 100 | Plus |
| X | 23542271 | X | 23033542..23033646 | 1184..1288 | 525 | 100 | Plus |
| X | 23542271 | X | 23032518..23032600 | 598..680 | 415 | 100 | Plus |
| X | 23542271 | X | 23044008..23044153 | 232..377 | 190 | 75.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:59:40 has no hits.
BS12058.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:49:07 Download gff for
BS12058.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2893-RB | 71..1687 | 9..1630 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:30:44 Download gff for
BS12058.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zyd-RE | 82..1688 | 17..1623 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:23:45 Download gff for
BS12058.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2893-RB | 76..1682 | 17..1623 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:00:57 Download gff for
BS12058.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zyd-RE | 82..1688 | 17..1623 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:00:57 Download gff for
BS12058.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 23033702..23034038 | 1287..1623 | 100 | | Plus |
| X | 23023398..23023431 | 17..50 | 100 | -> | Plus |
| X | 23030190..23030363 | 51..224 | 100 | -> | Plus |
| X | 23030422..23030609 | 225..412 | 100 | -> | Plus |
| X | 23030667..23030853 | 413..599 | 100 | -> | Plus |
| X | 23032520..23032600 | 600..680 | 100 | -> | Plus |
| X | 23032746..23033249 | 681..1184 | 100 | -> | Plus |
| X | 23033543..23033644 | 1185..1286 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:30:44 Download gff for
BS12058.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| XHet | 9485..9671 | 413..599 | 100 | -> | Plus |
| XHet | 11338..11418 | 600..680 | 100 | -> | Plus |
| XHet | 12520..12856 | 1287..1623 | 100 | | Plus |
| XHet | 9240..9427 | 225..412 | 100 | -> | Plus |
| XHet | 2216..2249 | 17..50 | 100 | -> | Plus |
| XHet | 9008..9181 | 51..224 | 100 | -> | Plus |
| XHet | 11564..12067 | 681..1184 | 100 | -> | Plus |
| XHet | 12361..12462 | 1185..1286 | 100 | -> | Plus |
BS12058.pep Sequence
Translation from 16 to 1623
> BS12058.pep
MEDYWGLSSTTDINCTQPAIDDFPRDLFSEAQRQSGAVVLHVIASLYLFV
ALAVVCDEYFVPAVEKICAALNMSNDVAGATFMAAATSAPELFVNVIGTF
ITEGDIGVGTIVGSAVFNILAVAACCGIGAGMTIPLDWWPLTRDSIAYGV
TVAILICVMHDERVEWYEALILVSLYAVYLAVMYFDKTFQKCAKGGVKQA
RSRSRSSNCSIHTKNSNEKEPELVENRICQNMANIQLNGGLNKEQAKATS
TSGAGTTAISITTSTMTTTLSTTHSAGGGGGAVGLCSGPGAIVQMAPLDD
AEAESHVAVAAADEGRKEEGYSLLSYPKDKSCFAQFTWLIIWPIHLLFRI
AIPDCKKAKNNKIFPLTFIMCIVWIGSLSYVVAWMITIIGDTLKIPDSVM
GITFLAAGTSVPEAVSSVIVAKRGHGSMGICNSIGSNTFDILLCLGVPWL
IKAVFFPIQPGQNYVAINSAGLEYSAITLLSTLFLLYLTFSTNKFKLDKK
VGTACLVMYLVFMVFASLIELNVFFRVNLPTCGRS*
BS12058.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:59:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| zyd-PE | 535 | CG2893-PE | 1..535 | 1..535 | 2761 | 100 | Plus |
| zyd-PF | 542 | CG2893-PF | 20..542 | 13..535 | 2693 | 100 | Plus |
| zyd-PA | 526 | CG2893-PA | 4..526 | 13..535 | 2693 | 100 | Plus |
| zyd-PG | 499 | CG2893-PG | 4..499 | 13..535 | 2515 | 94.8 | Plus |
| zyd-PH | 463 | CG2893-PH | 1..463 | 73..535 | 2387 | 100 | Plus |
