BS12059.complete Sequence
1838 bp assembled on 2008-08-15
GenBank Submission: KX805025
> BS12059.complete
GAAGTTATCAGTCGACATGGTTATGTCGGAGCTACGTTGGCACACCGCTA
GTCCCGAGGATAATAAGAATTCCTTGAAGCGCGATTTGCTCAAATCCACA
CCAACCAGTGCCCGCGAGGCCGCCGTTCACATAATGCAGAATCGATATAT
CAGTCGCCTGTCGCGTTCGCCATCGCCACTTCAATCGAATGCTTCCGATT
GCGATGATAACAACTCGAGTGTGGGCACCTCGAGCGATCGCTGCCGATCT
CCTTTGAGTCCTGCGCTCTCCTTGAGCCACCAGCAGGCCAAACGCCAGCT
GATGTCGCTGCAGCCCCACCCGGCACACCATCATCACAATCCGCACCATT
TGAACCACCTGAACCACCATCAGTACAAACAGGAGGAGGATTACGATGAC
GCCAATGGTGGGGCATTGAATTTAACCAGCGACAATAGTCGCCACAGCAC
TCAGTCTCCATCGAATTCGGTGAAATCGGCCACAGCATCGCCGGTTCCGG
TAATTTCAGTGCCCTCGCCAGTGCCGCCCATGATCTCTCCGGTTTTGGCT
CCCTCGGGTTGTGGCTCCACCACACCCAATTCCATGGCAGCAGCGGCTGC
AGCCGCCGCCGCTGTGGCATCCACCATGGGTAGTGGCATCTCGCCGTTGC
TGGCCCTGCCGGGAATGTCCTCGCCACAGGCTCAACTCGCAGCAGCTGGC
TTGGGCATGAACAATCCACTGCTGACTGGATCACTGTCGCCACAGGATTT
TGCCCAGTTCCATCAGCTATTGCAGCAACGTCAAGTTGCGTTGACACAGC
AGTTCAACAGCTACATGGAGCTGCTGCGAAGTGGTTCCCTGGGCCTGGCA
CAGGACGATCCGGCACTGACCGCCCAGGTGGCGGCAGCCCAGTTCCTAAT
GCAGAGCCAACTGCAGGCCCTCAGTCAGGCCAGTCAGCAATTGCAGGCAC
TGCAGAAGCAACAGCAGCGCCAGGTGGATGAGCCACTGCAGCTGAACCAC
AAGATGACGCAACAGCCACGCAGTTCCACACCGCACTCGATCCGCAGCCC
CATCGCAATTCGCAGTCCGGCCAGCTCACCCCAGCAGTTGCACCATCACC
ACCACCATCCACTGCAAATCACGCCGCCCAGCTCGGCGGCCAGTTTGAAA
TTGAGTGGTATGCTGACGCCCAGTACGCCCACCAGTGGCACCCAGATGAG
CCAGGGCACCACCACGCCGCAGCCCAAGACGGTGGCCAGTGCTGCAGCTG
CTCGGGCAGCGGGCGAGCCATCGCCGGAGGAAACCACCGATCTAGAAGAG
TTGGAGCAGTTTGCCAAGACCTTCAAGCAGCGGCGAATCAAGCTGGGCTT
CACCCAGGGCGATGTGGGTCTGGCCATGGGCAAACTGTATGGCAATGACT
TCTCGCAGACCACCATTTCACGTTTCGAGGCCCTCAATCTGAGCTTCAAG
AACATGTGCAAGCTGAAGCCGCTGCTCCAGAAGTGGTTGGATGACGCCGA
TCGCACCATCCAGGCCACCGGTGGTGTCTTCGATCCTGCCGCCTTGCAGG
CCACCGTCAGCACACCGGAGATCATTGGTCGCCGTCGCAAGAAGCGCACC
TCCATCGAGACCACCATTCGCGGTGCTCTGGAGAAGGCCTTTCTGGCCAA
CCAGAAGCCCACCTCAGAGGAGATCACTCAGCTGGCCGATCGTCTGAGCA
TGGAGAAGGAGGTGGTGCGCGTGTGGTTCTGCAACCGTCGGCAGAAGGAG
AAGCGCATCAATCCCTCCCTGGACAGTCCCACGGGCGCCGATGACGACGA
GTCCTCCTATATGATGCACTAAAAGCTTTCTAGACCAT
BS12059.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:53:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nub-RE | 1806 | CG34395-PE | 1..1806 | 17..1822 | 9030 | 100 | Plus |
| nub-RD | 1806 | CG34395-PD | 1..1806 | 17..1822 | 9030 | 100 | Plus |
| nub-RB | 2886 | CG34395-PB | 1211..2886 | 147..1822 | 8380 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:53:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nub-RE | 2829 | CG34395-RE | 214..2019 | 17..1822 | 9030 | 100 | Plus |
| nub-RD | 3267 | CG34395-RD | 652..2457 | 17..1822 | 9030 | 100 | Plus |
| nub-RB | 4497 | CG34395-RB | 2012..3687 | 147..1822 | 8380 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:53:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12625454..12627085 | 191..1822 | 8160 | 100 | Plus |
| 2L | 23513712 | 2L | 12685177..12685398 | 1270..1491 | 900 | 93.7 | Plus |
| 2L | 23513712 | 2L | 12618996..12619125 | 17..146 | 650 | 100 | Plus |
| 3L | 28110227 | 3L | 6791492..6791673 | 1310..1491 | 505 | 85.2 | Plus |
| 2L | 23513712 | 2L | 12685502..12685689 | 1586..1773 | 445 | 82.4 | Plus |
| 3L | 28110227 | 3L | 6791853..6791910 | 1701..1758 | 245 | 94.8 | Plus |
| 2L | 23513712 | 2L | 12622975..12623019 | 147..191 | 225 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 19:53:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2297..2537 | 898..1142 | 172 | 58.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6746..6903 | 902..1060 | 134 | 60.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1088..1153 | 935..1002 | 128 | 69.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2294..2372 | 946..1023 | 122 | 63.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1060..1178 | 889..1007 | 119 | 59.3 | Plus |
BS12059.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:53:59 Download gff for
BS12059.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nub-RD | 643..2457 | 11..1825 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:16 Download gff for
BS12059.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nub-RD | 652..2455 | 17..1820 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:59:11 Download gff for
BS12059.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nub-RD | 649..2452 | 17..1820 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:10:09 Download gff for
BS12059.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nub-RD | 652..2455 | 17..1820 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:10:09 Download gff for
BS12059.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12618996..12619125 | 17..146 | 100 | -> | Plus |
| 2L | 12622975..12623019 | 147..191 | 100 | -> | Plus |
| 2L | 12625455..12627083 | 192..1820 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:16 Download gff for
BS12059.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12618996..12619125 | 17..146 | 100 | -> | Plus |
| arm_2L | 12622975..12623019 | 147..191 | 100 | -> | Plus |
| arm_2L | 12625455..12627083 | 192..1820 | 100 | | Plus |
BS12059.pep Sequence
Translation from 16 to 1821
> BS12059.pep
MVMSELRWHTASPEDNKNSLKRDLLKSTPTSAREAAVHIMQNRYISRLSR
SPSPLQSNASDCDDNNSSVGTSSDRCRSPLSPALSLSHQQAKRQLMSLQP
HPAHHHHNPHHLNHLNHHQYKQEEDYDDANGGALNLTSDNSRHSTQSPSN
SVKSATASPVPVISVPSPVPPMISPVLAPSGCGSTTPNSMAAAAAAAAAV
ASTMGSGISPLLALPGMSSPQAQLAAAGLGMNNPLLTGSLSPQDFAQFHQ
LLQQRQVALTQQFNSYMELLRSGSLGLAQDDPALTAQVAAAQFLMQSQLQ
ALSQASQQLQALQKQQQRQVDEPLQLNHKMTQQPRSSTPHSIRSPIAIRS
PASSPQQLHHHHHHPLQITPPSSAASLKLSGMLTPSTPTSGTQMSQGTTT
PQPKTVASAAAARAAGEPSPEETTDLEELEQFAKTFKQRRIKLGFTQGDV
GLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLQKWLDDADRTIQA
TGGVFDPAALQATVSTPEIIGRRRKKRTSIETTIRGALEKAFLANQKPTS
EEITQLADRLSMEKEVVRVWFCNRRQKEKRINPSLDSPTGADDDESSYMM
H*
BS12059.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:34:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nub-PE | 601 | CG34395-PE | 1..601 | 1..601 | 3073 | 100 | Plus |
| nub-PD | 601 | CG34395-PD | 1..601 | 1..601 | 3073 | 100 | Plus |
| nub-PB | 961 | CG34395-PB | 394..961 | 34..601 | 2847 | 98.2 | Plus |
| pdm2-PA | 498 | CG12287-PA | 6..460 | 119..590 | 879 | 46.4 | Plus |
| pdm2-PD | 893 | CG12287-PD | 535..855 | 253..590 | 878 | 59.2 | Plus |
