Clone BS12062 Report

Search the DGRC for BS12062

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:120
Well:62
Vector:pDNR-Dual
Associated Gene/TranscriptPis-RA
Protein status:BS12062.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12062.3prime Sequence

705 bp (705 high quality bases) assembled on 2006-06-16

> BS12062.3prime
ATGGTCTAGAAAGCTTTCACTCCACTTTCTTGCCGCTCACCGGCTCCGAC
TTCTGGCGCCGCTCCTGCCGCTCGCGTACATCCACGGCCGCCAGATCGAT
GCCCGCCACGTAGGCGTGCATCACCGAGATCAGGGCCTTGAGCACGGCGA
AGGGACCCGTGAGGAAGGCGAGTATCTTGAAGAGCGATGCGCCGAATATC
AGCGGGCCGTAGGTGAAATGCAAGAGGTACAAGCACACGTAAAACAGCTC
ATTGACGCAGCACATGAATGTGAGTATGTCCTTCTGGTAATACAATCGCA
TTATGAAGTTGTCATTCACCTTGTGCGAGCTGCGTCCGACCACAACGCTC
GTCTGCATGAAGAGCCAGTGACAGGCCACGTCGATGGCGATGGACAGCTG
GAACCAGAACATGTACCGGGGATAGAAGTAGGCCAGGGTGACCAGTAGGC
CGGTGGTGCCGCAGCGATCGGTCAACTGGTCTAGCATGGCGCCAAAGCGA
GTGCTTTGGTTAAAGGCTCGGGCTGCTTGTCCATCGACGGCGTCCAGGAG
GGCGGAGGTTACATAACACCAGCCGGAGATCACATAGTTGGTGGACATGA
ACCAGAAGGCGATCAGGGCCAGAACGATGCGGGCGTAGCCGATCAGATTT
GGCACAAAGATGAAGACGTTATCGTGCTCGGCAATTGTCATGTCGACTGA
TAACT

BS12062.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:27:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG9245-PA 675 CG9245-RA 1..675 691..17 3350 99.8 Minus
CG9245-PB 246 CG9245-RB 1..187 691..505 935 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:19:27
Subject Length Description Subject Range Query Range Score Percent Strand
Pis-RA 1377 CG9245-RA 150..826 691..15 3370 99.9 Minus
Pis-RB 1652 CG9245-RB 612..1101 504..15 2435 99.8 Minus
Pis-RB 1652 CG9245-RB 150..336 691..505 935 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:19:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15702002..15702185 15..198 905 99.5 Plus
X 23542271 X 15702508..15702662 350..504 775 100 Plus
X 23542271 X 15702264..15702415 199..350 760 100 Plus
X 23542271 X 15703183..15703319 504..640 685 100 Plus
X 23542271 X 15703569..15703621 639..691 265 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:19:23 has no hits.

BS12062.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:45 Download gff for BS12062.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9245-PA 1..675 17..691 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:05:18 Download gff for BS12062.3prime
Subject Subject Range Query Range Percent Splice Strand
Pis-RA 150..826 15..691 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:40:34 Download gff for BS12062.3prime
Subject Subject Range Query Range Percent Splice Strand
Pis-RA 150..826 15..691 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:40:34 Download gff for BS12062.3prime
Subject Subject Range Query Range Percent Splice Strand
X 15702002..15702185 15..198 99 <- Plus
X 15702264..15702415 199..350 100 <- Plus
X 15702509..15702662 351..504 100 <- Plus
X 15703184..15703318 505..639 100 <- Plus
X 15703570..15703621 640..691 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:05:18 Download gff for BS12062.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15597217..15597351 505..639 100 <- Plus
arm_X 15597603..15597654 640..691 100   Plus
arm_X 15596542..15596695 351..504 100 <- Plus
arm_X 15596035..15596218 15..198 99 <- Plus
arm_X 15596297..15596448 199..350 100 <- Plus

BS12062.5prime Sequence

705 bp (705 high quality bases) assembled on 2006-06-16

> BS12062.5prime
GAAGTTATCAGTCGACATGACAATTGCCGAGCACGATAACGTCTTCATCT
TTGTGCCAAATCTGATCGGCTACGCCCGCATCGTTCTGGCCCTGATCGCC
TTCTGGTTCATGTCCACCAACTATGTGATCTCCGGCTGGTGTTATGTAAC
CTCCGCCCTCCTGGACGCCGTCGATGGACAAGCAGCCCGAGCCTTTAACC
AAAGCACTCGCTTTGGCGCCATGCTAGACCAGTTGACCGATCGCTGCGGC
ACCACCGGCCTACTGGTCACCCTGGCCTACTTCTATCCCCGGTACATGTT
CTGGTTCCAGCTGTCCATCGCCATCGACGTGGCCTGTCACTGGCTCTTCA
TGCAGACGAGCGTTGTGGTCGGACGCAGCTCGCACAAGGTGAATGACAAC
TTCATAATGCGATTGTATTACCAGAAGGACATACTCACATTCATGTGCTG
CGTCAATGAGCTGTTTTACGTGTGCTTGTACCTCTTGCATTTCACCTACG
GCCCGCTGATATTCGGCGCATCGCTCTTCAAGATACTCGCCTTCCTCACG
GGTCCCTTCGCCGTGCTCAAGGCCCTGATCTCGGTGATGCACGCCTACGT
GGCGGGCATCGATCTGGCGGCCGTGGATGTACGCGAGCGGCAGGAGCGGC
GCCAGAAGTCGGAGCCGGTGAGCGGCAAGAAAGTGGAGTGAAAGCTTTCT
AGACC

BS12062.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:27:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG9245-PA 675 CG9245-RA 1..675 17..691 3350 99.8 Plus
CG9245-PB 246 CG9245-RB 1..187 17..203 935 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:47:39
Subject Length Description Subject Range Query Range Score Percent Strand
Pis-RA 1377 CG9245-RA 150..826 17..693 3370 99.9 Plus
Pis-RB 1652 CG9245-RB 612..1101 204..693 2435 99.8 Plus
Pis-RB 1652 CG9245-RB 150..336 17..203 935 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:47:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15702002..15702185 693..510 905 99.5 Minus
X 23542271 X 15702508..15702662 358..204 775 100 Minus
X 23542271 X 15702264..15702415 509..358 760 100 Minus
X 23542271 X 15703183..15703319 204..68 685 100 Minus
X 23542271 X 15703569..15703621 69..17 265 100 Minus
Blast to na_te.dros performed on 2015-02-08 11:47:35 has no hits.

BS12062.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:45 Download gff for BS12062.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9245-PA 1..675 17..691 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:36:58 Download gff for BS12062.5prime
Subject Subject Range Query Range Percent Splice Strand
Pis-RA 150..826 17..693 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:42:14 Download gff for BS12062.5prime
Subject Subject Range Query Range Percent Splice Strand
Pis-RA 150..826 17..693 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:42:14 Download gff for BS12062.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15702002..15702185 510..693 99 <- Minus
X 15702264..15702415 358..509 100 <- Minus
X 15702509..15702662 204..357 100 <- Minus
X 15703184..15703318 69..203 100 <- Minus
X 15703570..15703621 17..68 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:36:58 Download gff for BS12062.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15597603..15597654 17..68 100   Minus
arm_X 15597217..15597351 69..203 100 <- Minus
arm_X 15596035..15596218 510..693 99 <- Minus
arm_X 15596297..15596448 358..509 100 <- Minus
arm_X 15596542..15596695 204..357 100 <- Minus

BS12062.complete Sequence

707 bp assembled on 2006-11-01

GenBank Submission: FJ637053

> BS12062.complete
GAAGTTATCAGTCGACATGACAATTGCCGAGCACGATAACGTCTTCATCT
TTGTGCCAAATCTGATCGGCTACGCCCGCATCGTTCTGGCCCTGATCGCC
TTCTGGTTCATGTCCACCAACTATGTGATCTCCGGCTGGTGTTATGTAAC
CTCCGCCCTCCTGGACGCCGTCGATGGACAAGCAGCCCGAGCCTTTAACC
AAAGCACTCGCTTTGGCGCCATGCTAGACCAGTTGACCGATCGCTGCGGC
ACCACCGGCCTACTGGTCACCCTGGCCTACTTCTATCCCCGGTACATGTT
CTGGTTCCAGCTGTCCATCGCCATCGACGTGGCCTGTCACTGGCTCTTCA
TGCAGACGAGCGTTGTGGTCGGACGCAGCTCGCACAAGGTGAATGACAAC
TTCATAATGCGATTGTATTACCAGAAGGACATACTCACATTCATGTGCTG
CGTCAATGAGCTGTTTTACGTGTGCTTGTACCTCTTGCATTTCACCTACG
GCCCGCTGATATTCGGCGCATCGCTCTTCAAGATACTCGCCTTCCTCACG
GGTCCCTTCGCCGTGCTCAAGGCCCTGATCTCGGTGATGCACGCCTACGT
GGCGGGCATCGATCTGGCGGCCGTGGATGTACGCGAGCGGCAGGAGCGGC
GCCAGAAGTCGGAGCCGGTGAGCGGCAAGAAAGTGGAGTGAAAGCTTTCT
AGACCAT

BS12062.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:23:35
Subject Length Description Subject Range Query Range Score Percent Strand
Pis-RA 675 CG9245-PA 1..675 17..691 3360 99.9 Plus
Pis-RB 246 CG9245-PB 1..187 17..203 935 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:23:36
Subject Length Description Subject Range Query Range Score Percent Strand
Pis-RA 1377 CG9245-RA 150..826 17..693 3370 99.9 Plus
Pis-RB 1652 CG9245-RB 612..1101 204..693 2435 99.8 Plus
Pis-RB 1652 CG9245-RB 150..336 17..203 935 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:23:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15702002..15702185 693..510 905 99.5 Minus
X 23542271 X 15702508..15702662 358..204 775 100 Minus
X 23542271 X 15702264..15702415 509..358 760 100 Minus
X 23542271 X 15703183..15703319 204..68 685 100 Minus
X 23542271 X 15703569..15703621 69..17 265 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:23:34 has no hits.

BS12062.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:46:44 Download gff for BS12062.complete
Subject Subject Range Query Range Percent Splice Strand
Pis-RA 1..675 17..691 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:21:49 Download gff for BS12062.complete
Subject Subject Range Query Range Percent Splice Strand
Pis-RA 145..821 17..693 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:41:47 Download gff for BS12062.complete
Subject Subject Range Query Range Percent Splice Strand
Pis-RA 150..823 17..690 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:46:44 Download gff for BS12062.complete
Subject Subject Range Query Range Percent Splice Strand
Pis-RA 145..821 17..693 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:10:25 Download gff for BS12062.complete
Subject Subject Range Query Range Percent Splice Strand
Pis-RA 150..823 17..690 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:10:25 Download gff for BS12062.complete
Subject Subject Range Query Range Percent Splice Strand
X 15702264..15702415 358..509 100 <- Minus
X 15702509..15702662 204..357 100 <- Minus
X 15703184..15703318 69..203 100 <- Minus
X 15703570..15703621 17..68 100   Minus
X 15702005..15702185 510..690 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:41:47 Download gff for BS12062.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15597217..15597351 69..203 100 <- Minus
arm_X 15597603..15597654 17..68 100   Minus
arm_X 15596297..15596448 358..509 100 <- Minus
arm_X 15596542..15596695 204..357 100 <- Minus
arm_X 15596038..15596218 510..690 99 <- Minus

BS12062.pep Sequence

Translation from 16 to 690

> BS12062.pep
MTIAEHDNVFIFVPNLIGYARIVLALIAFWFMSTNYVISGWCYVTSALLD
AVDGQAARAFNQSTRFGAMLDQLTDRCGTTGLLVTLAYFYPRYMFWFQLS
IAIDVACHWLFMQTSVVVGRSSHKVNDNFIMRLYYQKDILTFMCCVNELF
YVCLYLLHFTYGPLIFGASLFKILAFLTGPFAVLKALISVMHAYVAGIDL
AAVDVRERQERRQKSEPVSGKKVE*

BS12062.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:50
Subject Length Description Subject Range Query Range Score Percent Strand
Pis-PA 224 CG9245-PA 1..224 1..224 1171 100 Plus
Pis-PB 81 CG9245-PB 1..63 1..63 324 98.4 Plus