Clone Sequence Records
BS12062.3prime Sequence
705 bp (705 high quality bases) assembled on 2006-06-16
> BS12062.3prime
ATGGTCTAGAAAGCTTTCACTCCACTTTCTTGCCGCTCACCGGCTCCGAC
TTCTGGCGCCGCTCCTGCCGCTCGCGTACATCCACGGCCGCCAGATCGAT
GCCCGCCACGTAGGCGTGCATCACCGAGATCAGGGCCTTGAGCACGGCGA
AGGGACCCGTGAGGAAGGCGAGTATCTTGAAGAGCGATGCGCCGAATATC
AGCGGGCCGTAGGTGAAATGCAAGAGGTACAAGCACACGTAAAACAGCTC
ATTGACGCAGCACATGAATGTGAGTATGTCCTTCTGGTAATACAATCGCA
TTATGAAGTTGTCATTCACCTTGTGCGAGCTGCGTCCGACCACAACGCTC
GTCTGCATGAAGAGCCAGTGACAGGCCACGTCGATGGCGATGGACAGCTG
GAACCAGAACATGTACCGGGGATAGAAGTAGGCCAGGGTGACCAGTAGGC
CGGTGGTGCCGCAGCGATCGGTCAACTGGTCTAGCATGGCGCCAAAGCGA
GTGCTTTGGTTAAAGGCTCGGGCTGCTTGTCCATCGACGGCGTCCAGGAG
GGCGGAGGTTACATAACACCAGCCGGAGATCACATAGTTGGTGGACATGA
ACCAGAAGGCGATCAGGGCCAGAACGATGCGGGCGTAGCCGATCAGATTT
GGCACAAAGATGAAGACGTTATCGTGCTCGGCAATTGTCATGTCGACTGA
TAACT
BS12062.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:27:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9245-PA | 675 | CG9245-RA | 1..675 | 691..17 | 3350 | 99.8 | Minus |
CG9245-PB | 246 | CG9245-RB | 1..187 | 691..505 | 935 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:19:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pis-RA | 1377 | CG9245-RA | 150..826 | 691..15 | 3370 | 99.9 | Minus |
Pis-RB | 1652 | CG9245-RB | 612..1101 | 504..15 | 2435 | 99.8 | Minus |
Pis-RB | 1652 | CG9245-RB | 150..336 | 691..505 | 935 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:19:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15702002..15702185 | 15..198 | 905 | 99.5 | Plus |
X | 23542271 | X | 15702508..15702662 | 350..504 | 775 | 100 | Plus |
X | 23542271 | X | 15702264..15702415 | 199..350 | 760 | 100 | Plus |
X | 23542271 | X | 15703183..15703319 | 504..640 | 685 | 100 | Plus |
X | 23542271 | X | 15703569..15703621 | 639..691 | 265 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:19:23 has no hits.
BS12062.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:45 Download gff for
BS12062.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9245-PA | 1..675 | 17..691 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:05:18 Download gff for
BS12062.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pis-RA | 150..826 | 15..691 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:40:34 Download gff for
BS12062.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pis-RA | 150..826 | 15..691 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:40:34 Download gff for
BS12062.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15702002..15702185 | 15..198 | 99 | <- | Plus |
X | 15702264..15702415 | 199..350 | 100 | <- | Plus |
X | 15702509..15702662 | 351..504 | 100 | <- | Plus |
X | 15703184..15703318 | 505..639 | 100 | <- | Plus |
X | 15703570..15703621 | 640..691 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:05:18 Download gff for
BS12062.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15597217..15597351 | 505..639 | 100 | <- | Plus |
arm_X | 15597603..15597654 | 640..691 | 100 | | Plus |
arm_X | 15596542..15596695 | 351..504 | 100 | <- | Plus |
arm_X | 15596035..15596218 | 15..198 | 99 | <- | Plus |
arm_X | 15596297..15596448 | 199..350 | 100 | <- | Plus |
BS12062.5prime Sequence
705 bp (705 high quality bases) assembled on 2006-06-16
> BS12062.5prime
GAAGTTATCAGTCGACATGACAATTGCCGAGCACGATAACGTCTTCATCT
TTGTGCCAAATCTGATCGGCTACGCCCGCATCGTTCTGGCCCTGATCGCC
TTCTGGTTCATGTCCACCAACTATGTGATCTCCGGCTGGTGTTATGTAAC
CTCCGCCCTCCTGGACGCCGTCGATGGACAAGCAGCCCGAGCCTTTAACC
AAAGCACTCGCTTTGGCGCCATGCTAGACCAGTTGACCGATCGCTGCGGC
ACCACCGGCCTACTGGTCACCCTGGCCTACTTCTATCCCCGGTACATGTT
CTGGTTCCAGCTGTCCATCGCCATCGACGTGGCCTGTCACTGGCTCTTCA
TGCAGACGAGCGTTGTGGTCGGACGCAGCTCGCACAAGGTGAATGACAAC
TTCATAATGCGATTGTATTACCAGAAGGACATACTCACATTCATGTGCTG
CGTCAATGAGCTGTTTTACGTGTGCTTGTACCTCTTGCATTTCACCTACG
GCCCGCTGATATTCGGCGCATCGCTCTTCAAGATACTCGCCTTCCTCACG
GGTCCCTTCGCCGTGCTCAAGGCCCTGATCTCGGTGATGCACGCCTACGT
GGCGGGCATCGATCTGGCGGCCGTGGATGTACGCGAGCGGCAGGAGCGGC
GCCAGAAGTCGGAGCCGGTGAGCGGCAAGAAAGTGGAGTGAAAGCTTTCT
AGACC
BS12062.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:27:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9245-PA | 675 | CG9245-RA | 1..675 | 17..691 | 3350 | 99.8 | Plus |
CG9245-PB | 246 | CG9245-RB | 1..187 | 17..203 | 935 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:47:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pis-RA | 1377 | CG9245-RA | 150..826 | 17..693 | 3370 | 99.9 | Plus |
Pis-RB | 1652 | CG9245-RB | 612..1101 | 204..693 | 2435 | 99.8 | Plus |
Pis-RB | 1652 | CG9245-RB | 150..336 | 17..203 | 935 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:47:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15702002..15702185 | 693..510 | 905 | 99.5 | Minus |
X | 23542271 | X | 15702508..15702662 | 358..204 | 775 | 100 | Minus |
X | 23542271 | X | 15702264..15702415 | 509..358 | 760 | 100 | Minus |
X | 23542271 | X | 15703183..15703319 | 204..68 | 685 | 100 | Minus |
X | 23542271 | X | 15703569..15703621 | 69..17 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 11:47:35 has no hits.
BS12062.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:45 Download gff for
BS12062.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9245-PA | 1..675 | 17..691 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:36:58 Download gff for
BS12062.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pis-RA | 150..826 | 17..693 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:42:14 Download gff for
BS12062.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pis-RA | 150..826 | 17..693 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:42:14 Download gff for
BS12062.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15702002..15702185 | 510..693 | 99 | <- | Minus |
X | 15702264..15702415 | 358..509 | 100 | <- | Minus |
X | 15702509..15702662 | 204..357 | 100 | <- | Minus |
X | 15703184..15703318 | 69..203 | 100 | <- | Minus |
X | 15703570..15703621 | 17..68 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:36:58 Download gff for
BS12062.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15597603..15597654 | 17..68 | 100 | | Minus |
arm_X | 15597217..15597351 | 69..203 | 100 | <- | Minus |
arm_X | 15596035..15596218 | 510..693 | 99 | <- | Minus |
arm_X | 15596297..15596448 | 358..509 | 100 | <- | Minus |
arm_X | 15596542..15596695 | 204..357 | 100 | <- | Minus |
BS12062.complete Sequence
707 bp assembled on 2006-11-01
GenBank Submission: FJ637053
> BS12062.complete
GAAGTTATCAGTCGACATGACAATTGCCGAGCACGATAACGTCTTCATCT
TTGTGCCAAATCTGATCGGCTACGCCCGCATCGTTCTGGCCCTGATCGCC
TTCTGGTTCATGTCCACCAACTATGTGATCTCCGGCTGGTGTTATGTAAC
CTCCGCCCTCCTGGACGCCGTCGATGGACAAGCAGCCCGAGCCTTTAACC
AAAGCACTCGCTTTGGCGCCATGCTAGACCAGTTGACCGATCGCTGCGGC
ACCACCGGCCTACTGGTCACCCTGGCCTACTTCTATCCCCGGTACATGTT
CTGGTTCCAGCTGTCCATCGCCATCGACGTGGCCTGTCACTGGCTCTTCA
TGCAGACGAGCGTTGTGGTCGGACGCAGCTCGCACAAGGTGAATGACAAC
TTCATAATGCGATTGTATTACCAGAAGGACATACTCACATTCATGTGCTG
CGTCAATGAGCTGTTTTACGTGTGCTTGTACCTCTTGCATTTCACCTACG
GCCCGCTGATATTCGGCGCATCGCTCTTCAAGATACTCGCCTTCCTCACG
GGTCCCTTCGCCGTGCTCAAGGCCCTGATCTCGGTGATGCACGCCTACGT
GGCGGGCATCGATCTGGCGGCCGTGGATGTACGCGAGCGGCAGGAGCGGC
GCCAGAAGTCGGAGCCGGTGAGCGGCAAGAAAGTGGAGTGAAAGCTTTCT
AGACCAT
BS12062.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:23:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pis-RA | 675 | CG9245-PA | 1..675 | 17..691 | 3360 | 99.9 | Plus |
Pis-RB | 246 | CG9245-PB | 1..187 | 17..203 | 935 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:23:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pis-RA | 1377 | CG9245-RA | 150..826 | 17..693 | 3370 | 99.9 | Plus |
Pis-RB | 1652 | CG9245-RB | 612..1101 | 204..693 | 2435 | 99.8 | Plus |
Pis-RB | 1652 | CG9245-RB | 150..336 | 17..203 | 935 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:23:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15702002..15702185 | 693..510 | 905 | 99.5 | Minus |
X | 23542271 | X | 15702508..15702662 | 358..204 | 775 | 100 | Minus |
X | 23542271 | X | 15702264..15702415 | 509..358 | 760 | 100 | Minus |
X | 23542271 | X | 15703183..15703319 | 204..68 | 685 | 100 | Minus |
X | 23542271 | X | 15703569..15703621 | 69..17 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:23:34 has no hits.
BS12062.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:46:44 Download gff for
BS12062.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pis-RA | 1..675 | 17..691 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:21:49 Download gff for
BS12062.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pis-RA | 145..821 | 17..693 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:41:47 Download gff for
BS12062.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pis-RA | 150..823 | 17..690 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:46:44 Download gff for
BS12062.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pis-RA | 145..821 | 17..693 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:10:25 Download gff for
BS12062.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pis-RA | 150..823 | 17..690 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:10:25 Download gff for
BS12062.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15702264..15702415 | 358..509 | 100 | <- | Minus |
X | 15702509..15702662 | 204..357 | 100 | <- | Minus |
X | 15703184..15703318 | 69..203 | 100 | <- | Minus |
X | 15703570..15703621 | 17..68 | 100 | | Minus |
X | 15702005..15702185 | 510..690 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:41:47 Download gff for
BS12062.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15597217..15597351 | 69..203 | 100 | <- | Minus |
arm_X | 15597603..15597654 | 17..68 | 100 | | Minus |
arm_X | 15596297..15596448 | 358..509 | 100 | <- | Minus |
arm_X | 15596542..15596695 | 204..357 | 100 | <- | Minus |
arm_X | 15596038..15596218 | 510..690 | 99 | <- | Minus |
BS12062.pep Sequence
Translation from 16 to 690
> BS12062.pep
MTIAEHDNVFIFVPNLIGYARIVLALIAFWFMSTNYVISGWCYVTSALLD
AVDGQAARAFNQSTRFGAMLDQLTDRCGTTGLLVTLAYFYPRYMFWFQLS
IAIDVACHWLFMQTSVVVGRSSHKVNDNFIMRLYYQKDILTFMCCVNELF
YVCLYLLHFTYGPLIFGASLFKILAFLTGPFAVLKALISVMHAYVAGIDL
AAVDVRERQERRQKSEPVSGKKVE*
BS12062.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pis-PA | 224 | CG9245-PA | 1..224 | 1..224 | 1171 | 100 | Plus |
Pis-PB | 81 | CG9245-PB | 1..63 | 1..63 | 324 | 98.4 | Plus |