Clone Sequence Records
BS12063.3prime Sequence
864 bp (760 high quality bases) assembled on 2006-06-16
> BS12063.3prime
ATGGTCTAGAAAGCTTTCAGTAGCCGTAGGTGGCTCTGGTGTAGTATCCC
GCGTAGCCGTAGATCTGTTCATTTCTTGGCATGGGACGGCGTTTTACTCG
CACCTCCACAAAGAGGTGGGCCACAAATACTGTTGCAAAGAAGGCCATCC
ACCCACCAAGGGCAGCTCCAGCTGCCACATCTGTTAAGTGGTTCTGGTAG
GTAGAGATGCGCTCCCAGCAAACCACCAAGGCCAGAGAGCAACAAGCCAG
TTGCAGGGAGGCTCGGACTAATCGCAGCCAGGGAGCAAACAATCTGGCCT
GGGAATAAAAAATCAGAAAGCCCATGGCGTAGCAAGTGGTGGACACGAAT
CCGCTGGGGAAGGAGTGGCGCACCAGGGCGAGCAGATCCTGCGAGGCGGC
GAACTCCGTGCAACTGAAGTCCTCGAGGTAGAGGGTGGAGTTCTGCGCGG
TCACGTCGGAGCAGCTCTCGCCGCCCTCTGTTCCCCATGTGGGCTGGCAG
ATATCGAAGAAGTAGGGCCTCAGTCGGCCCGTCGAGTGCTTAGTCAGCCG
AATCGCCGCCAAGGTCAGCCCCAGACCGAATAGGTAAACGCCAATGGCCT
TGTAGCATTCGCTGATGAATCTGGGGATGCGGACCCCGACGAAGACGAAG
CGCTGCGTCAGCTCCGTGGAGCTGGGTACCACGGCAGCCCTGAGCATCTC
CACCACGAGCACAAATGCAGCGGGCAGAGCAACCACTGCGATCGTAAGGT
GGACCTTGGTCAGCCAGGGCTGGCGATAGGGATACTTCAGGCTGGTATCA
CTGCAGTGAAATCCCCGTTGGGCCGTGGACAACTGCTGGGGCAGCACCAC
TAGGGCCGCTCCAT
BS12063.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:27:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11437-PA | 918 | CG11437-RA | 71..918 | 864..17 | 4215 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:04:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11437-RA | 992 | CG11437-RA | 82..929 | 864..17 | 4225 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:04:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22468943..22469790 | 864..17 | 4225 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:04:29 has no hits.
BS12063.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:46 Download gff for
BS12063.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11437-PA | 71..918 | 17..864 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:43:45 Download gff for
BS12063.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11437-RA | 82..933 | 11..864 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:18:24 Download gff for
BS12063.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11437-RA | 82..933 | 11..864 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:18:24 Download gff for
BS12063.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22468943..22469794 | 11..864 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:43:45 Download gff for
BS12063.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22462043..22462894 | 11..864 | 99 | | Minus |
BS12063.5prime Sequence
842 bp (840 high quality bases) assembled on 2006-06-16
> BS12063.5prime
GAAGTTATCAGTCGACATGTGCGGCAATCCGAACACGCGTCTCCTCTCCC
GGCTGGTCATTGACTTCCTGATTCTCCTAGGAATCTATGGAGCGGCCCTA
GTGGTGCTGCCCCAGCAGTTGTCCACGGCCCAACGGGGATTCCACTGCAG
TGATACCAGCCTGAAGTATCCCTATCGCCAGCCCTGGCTGACCAAGGTCC
ACCTTACGATCGCAGTGGTTGCTCTGCCCGCTGCATTTGTGCTCGTGGTG
GAGATGCTCAGGGCTGCCGTGGTACCCAGCTCCACGGAGCTGACGCAGCG
CTTCGTCTTCGTCGGGGTCCGCATCCCCAGATTCATCAGCGAATGCTACA
AGGCCATTGGCGTTTACCTATTCGGTCTGGGGCTGACCTTGGCGGCGATT
CGGCTGACTAAGCACTCGACGGGCCGACTGAGGCCCTACTTCTTCGATAT
CTGCCAGCCCACATGGGGAACAGAGGGCGGCGAGAGCTGCTCCGACGTGA
CCGCGCAGAACTCCACCCTCTACCTCGAGGACTTCAGTTGCACGGAGTTC
GCCGCCTCGCAGGATCTGCTCGCCCTGGTGCGCCACTCCTTCCCCAGCGG
ATTCGTGTCCACCACTTGCTACGCCATGGGCTTTCTGATTTTTTATTCCC
AGGCCAGATTGTTTGCTCCCTGGCTGCGATTAGTCCGAGCCTCCCTGCAA
CTGGCTTGTTGCTCTCTGGCCTTGGTGGTTTGCTGGGAGCGCATCTCTAC
CTACCAGAACCACTTAACAGATGTGGCAGCTGGAGCTGCCCTTGGTGGGT
GGATGGCCTTCTTTGCAACAGTATTTGTGGCCCACCTCTTTG
BS12063.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:27:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11437-PA | 918 | CG11437-RA | 1..826 | 17..842 | 4130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:15:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11437-RA | 992 | CG11437-RA | 12..837 | 17..842 | 4130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:15:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22468873..22469698 | 17..842 | 4130 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 10:15:08 has no hits.
BS12063.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:46 Download gff for
BS12063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11437-PA | 1..826 | 17..842 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:39:31 Download gff for
BS12063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11437-RA | 1..837 | 8..842 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:24:55 Download gff for
BS12063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11437-RA | 1..837 | 8..842 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:24:55 Download gff for
BS12063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22468862..22469698 | 8..842 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:39:31 Download gff for
BS12063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22461962..22462798 | 8..842 | 99 | | Plus |
BS12063.complete Sequence
950 bp assembled on 2006-11-01
GenBank Submission: FJ637054
> BS12063.complete
GAAGTTATCAGTCGACATGTGCGGCAATCCGAACACGCGTCTCCTCTCCC
GGCTGGTCATTGACTTCCTGATTCTCCTAGGAATCTATGGAGCGGCCCTA
GTGGTGCTGCCCCAGCAGTTGTCCACGGCCCAACGGGGATTCCACTGCAG
TGATACCAGCCTGAAGTATCCCTATCGCCAGCCCTGGCTGACCAAGGTCC
ACCTTACGATCGCAGTGGTTGCTCTGCCCGCTGCATTTGTGCTCGTGGTG
GAGATGCTCAGGGCTGCCGTGGTACCCAGCTCCACGGAGCTGACGCAGCG
CTTCGTCTTCGTCGGGGTCCGCATCCCCAGATTCATCAGCGAATGCTACA
AGGCCATTGGCGTTTACCTATTCGGTCTGGGGCTGACCTTGGCGGCGATT
CGGCTGACTAAGCACTCGACGGGCCGACTGAGGCCCTACTTCTTCGATAT
CTGCCAGCCCACATGGGGAACAGAGGGCGGCGAGAGCTGCTCCGACGTGA
CCGCGCAGAACTCCACCCTCTACCTCGAGGACTTCAGTTGCACGGAGTTC
GCCGCCTCGCAGGATCTGCTCGCCCTGGTGCGCCACTCCTTCCCCAGCGG
ATTCGTGTCCACCACTTGCTACGCCATGGGCTTTCTGATTTTTTATTCCC
AGGCCAGATTGTTTGCTCCCTGGCTGCGATTAGTCCGAGCCTCCCTGCAA
CTGGCTTGTTGCTCTCTGGCCTTGGTGGTTTGCTGGGAGCGCATCTCTAC
CTACCAGAACCACTTAACAGATGTGGCAGCTGGAGCTGCCCTTGGTGGGT
GGATGGCCTTCTTTGCAACAGTATTTGTGGCCCACCTCTTTGTGGAGGTG
CGAGTAAAACGCCGTCCCATGCCAAGAAATGAACAGATCTACGGCTACGC
GGGATACTACACCAGAGCCACCTACGGCTACTGAAAGCTTTCTAGACCAT
BS12063.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:18:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11437-RA | 918 | CG11437-PA | 1..918 | 17..934 | 4590 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:18:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11437-RA | 992 | CG11437-RA | 12..929 | 17..934 | 4590 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:18:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22468873..22469790 | 17..934 | 4590 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:18:01 has no hits.
BS12063.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:46:45 Download gff for
BS12063.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11437-RA | 1..918 | 17..934 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:21:50 Download gff for
BS12063.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11437-RA | 1..931 | 10..940 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:02 Download gff for
BS12063.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11437-RA | 12..928 | 17..933 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:46:45 Download gff for
BS12063.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11437-RA | 1..931 | 10..940 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:15:24 Download gff for
BS12063.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11437-RA | 12..928 | 17..933 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:15:24 Download gff for
BS12063.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22468873..22469789 | 17..933 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:02 Download gff for
BS12063.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22461973..22462889 | 17..933 | 100 | | Plus |
BS12063.pep Sequence
Translation from 16 to 933
> BS12063.pep
MCGNPNTRLLSRLVIDFLILLGIYGAALVVLPQQLSTAQRGFHCSDTSLK
YPYRQPWLTKVHLTIAVVALPAAFVLVVEMLRAAVVPSSTELTQRFVFVG
VRIPRFISECYKAIGVYLFGLGLTLAAIRLTKHSTGRLRPYFFDICQPTW
GTEGGESCSDVTAQNSTLYLEDFSCTEFAASQDLLALVRHSFPSGFVSTT
CYAMGFLIFYSQARLFAPWLRLVRASLQLACCSLALVVCWERISTYQNHL
TDVAAGAALGGWMAFFATVFVAHLFVEVRVKRRPMPRNEQIYGYAGYYTR
ATYGY*
BS12063.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11437-PA | 305 | CG11437-PA | 1..305 | 1..305 | 1595 | 100 | Plus |
| wun-PA | 300 | CG8804-PA | 4..277 | 6..281 | 384 | 33.3 | Plus |
| wun-PB | 379 | CG8804-PB | 83..356 | 6..281 | 384 | 33.3 | Plus |
| wun-PC | 364 | CG8804-PC | 83..335 | 6..260 | 369 | 34.1 | Plus |
| wun2-PA | 350 | CG8805-PA | 86..338 | 8..260 | 363 | 32.8 | Plus |
