BS12064.complete Sequence
1634 bp assembled on 2009-12-07
GenBank Submission: KX802883
> BS12064.complete
GAAGTTATCAGTCGACATGAAAATGGGTAGCCAGTACATCGACGGGGCGA
AATTAAAAGCAAACAGCCACAGAAAGCGGCGATGCAGTCCGCTGCTTTAT
GGAATTATCTTGCTCTGCAAAGTGGCGATGATACCGGCAGCTGTTCCGGA
ATCGGAATTGGATGCAGGAGCCCTCTATAGTCAGCCCCTCACTACGATGG
CGGGACAGCCGCGCAACGATGACACATTCCGGCCCATCCTACCCATCGAC
ATCAGTCCGGAGTTCATTTCGAGGAATGTATTCACAAAGTCGGGCCAGTA
CAGAGTGTTCCAGCCGGCGGAGAGCGAGAGTGATCTGCGCTTGGCGGTGG
CCATGCGTCGACGGAACTTTAAACACCCCTCGGATTCACCCAGAAAGCAG
GAGTCCGAAAGTTCGGCAGCCGCTTTTAAAAACCAAACCATTACCTCTAT
CGACGCCGAACTAAAAGGTCTGGAGGATCTGCTCGTGGACTACGTGGAGC
AGTTCTTCAGCAACGGCAGATATGAGCCCACTCCTGGTTTGGTCCTGGCT
CTTCAGCAGAACCACTCGCACCCACAATCTTATACTGGCAAGCGCACCAC
CCGAAGCATTTTGGAGGACACCAACGTTGAGCTGAATGTTCCAAGGGCTT
TTGAAAGCGCCCGACTGCTTTTCTTTAGCGGTTTGAAGAAGGTGATGTGG
CCCATCTATATGGGTTTGCAAGTGCTGAAGAGCGTGCTCTTCGCCATGTT
CCTGCCAACCATCATCAGCAGTGTAAGCCGACTGATTGGCAAGGGCATCA
CTTCCGGCTCGGCTGGGTCGGTGCCGTTGTTTATCCGCCCCATTGAGCCG
CCACAAGAACTGGACTTCCGGGACAACAGCATGAATTTCGATGATGACAG
CAAATTTTCCCTGGCGGACGAGGGCAAAACGCCAGCCGGCTACGAGTACA
ATGCAGAGGCATCACAGCAGCAGGCGCAATATGCCCAGGTCAATGGGAAC
TCGGTGAACCAGGCCACTTTGTCGCGCTATGGAGGTCAGCAGATGATGCA
GGACACCTATCTGAGTGCTCTGCAGAGCATTGGCGCTGCCTCCTTCAAAA
ACTCCCAGAGCATGTCAGGATCCTTCAGCGCCGGAGCTGGTGGCGGAGCT
CCAGGAATGACGAAGAAACCAACGCCGGCCGTGATGAACACGTTCCAGAG
CTTCCAGAAGGTGCCCAGCTCGTCGCTTTTGCTGTCCAACTATGACCCCT
TCTACAGTCCACTATTGTCCCGCCTGGACTCGGTGTTTGCCCAGCTCAAA
TTGAATCCGGAGAACGAAGCTTGCCGCGAGAAACTCATCTGCCTGATGTA
CGCCAACCCCGCGAAGTATGCTCCGTACAGCAACCTGGTCTCAGCTCAAC
TCAGCAGGGAACTGAACGAGCTGCGGAAGCCTACTTCCGACAACCCGGAC
ATCCTGCGATTCTTCAAGTACATGCGAGCGGCGAAGGACGGTCAGGACGG
CGTCGACTGCGACGAGTCCTTCGCCAAGTGCAAGGAGCTGAAGGACCTCG
AGAACCCGGCAATGCTGTCCACCTACAACGACATCAACAAACTGGTCCAG
GCCCGCAAGCTGGCGTAGAAGCTTTCTAGACCAT
BS12064.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:06:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Osi24-RA | 1602 | CG15589-PA | 1..1602 | 17..1618 | 8010 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:06:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Osi24-RA | 2629 | CG15589-RA | 531..2133 | 17..1619 | 8015 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:06:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6204445..6205110 | 17..682 | 3330 | 100 | Plus |
| 3R | 32079331 | 3R | 6205880..6206336 | 952..1408 | 2285 | 100 | Plus |
| 3R | 32079331 | 3R | 6206969..6207182 | 1406..1619 | 1070 | 100 | Plus |
| 3R | 32079331 | 3R | 6205657..6205819 | 794..956 | 815 | 100 | Plus |
| 3R | 32079331 | 3R | 6205483..6205598 | 680..795 | 580 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:06:40 has no hits.
BS12064.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:45:43 Download gff for
BS12064.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15589-RA | 529..2130 | 17..1618 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:06:10 Download gff for
BS12064.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Osi24-RA | 531..2132 | 17..1618 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:06:21 Download gff for
BS12064.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15589-RA | 529..2130 | 17..1618 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:04:13 Download gff for
BS12064.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Osi24-RA | 531..2132 | 17..1618 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:04:13 Download gff for
BS12064.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6204445..6205108 | 17..680 | 100 | -> | Plus |
| 3R | 6205484..6205597 | 681..794 | 100 | -> | Plus |
| 3R | 6205658..6205819 | 795..956 | 100 | -> | Plus |
| 3R | 6205885..6206335 | 957..1407 | 100 | -> | Plus |
| 3R | 6206971..6207181 | 1408..1618 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:06:10 Download gff for
BS12064.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2030167..2030830 | 17..680 | 100 | -> | Plus |
| arm_3R | 2031206..2031319 | 681..794 | 100 | -> | Plus |
| arm_3R | 2031380..2031541 | 795..956 | 100 | -> | Plus |
| arm_3R | 2031607..2032057 | 957..1407 | 100 | -> | Plus |
| arm_3R | 2032693..2032903 | 1408..1618 | 100 | | Plus |
BS12064.pep Sequence
Translation from 16 to 1617
> BS12064.pep
MKMGSQYIDGAKLKANSHRKRRCSPLLYGIILLCKVAMIPAAVPESELDA
GALYSQPLTTMAGQPRNDDTFRPILPIDISPEFISRNVFTKSGQYRVFQP
AESESDLRLAVAMRRRNFKHPSDSPRKQESESSAAAFKNQTITSIDAELK
GLEDLLVDYVEQFFSNGRYEPTPGLVLALQQNHSHPQSYTGKRTTRSILE
DTNVELNVPRAFESARLLFFSGLKKVMWPIYMGLQVLKSVLFAMFLPTII
SSVSRLIGKGITSGSAGSVPLFIRPIEPPQELDFRDNSMNFDDDSKFSLA
DEGKTPAGYEYNAEASQQQAQYAQVNGNSVNQATLSRYGGQQMMQDTYLS
ALQSIGAASFKNSQSMSGSFSAGAGGGAPGMTKKPTPAVMNTFQSFQKVP
SSSLLLSNYDPFYSPLLSRLDSVFAQLKLNPENEACREKLICLMYANPAK
YAPYSNLVSAQLSRELNELRKPTSDNPDILRFFKYMRAAKDGQDGVDCDE
SFAKCKELKDLENPAMLSTYNDINKLVQARKLA*
BS12064.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:35:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Osi24-PA | 533 | CG15589-PA | 1..533 | 1..533 | 2724 | 100 | Plus |
| Osi17-PB | 648 | CG15598-PB | 548..643 | 408..505 | 259 | 44.9 | Plus |
| Osi17-PA | 648 | CG15598-PA | 548..643 | 408..505 | 259 | 44.9 | Plus |
| Osi17-PD | 750 | CG15598-PD | 650..745 | 408..505 | 259 | 44.9 | Plus |
| Osi17-PC | 750 | CG15598-PC | 650..745 | 408..505 | 259 | 44.9 | Plus |
