BS12065.complete Sequence
1331 bp assembled on 2006-11-01
GenBank Submission: FJ637055
> BS12065.complete
GAAGTTATCAGTCGACATGGGGAACTACGAGAAACTGGATGGCAGTTCCG
CGGGGAGGATTACGGATGAGCTGTCCCGTAAGGAACAACGGAATTGCAGC
CTGCGAACTTTGGTCTGCTGGAGTGCTTTGTTGTTCTCTTTGTTGTGCCT
TTGCCTCGGGTTCATCGGCCTGGGATTACTCGGCATCCAAACTGGGGAAG
TGCACAAGGTGGGGCAGCGGTTGGTGTGCTACTACGCAAGCGATGGCACC
CACAATCTCAGCCTTTTGGATGTTCCCGGCGACCTGTGCACCCACATCAA
TATCGGACCCGCCACTTTGGATAATGCCACCATAGTCCTTCCCGATACCC
TCAGACAGGTACTACAGAACGACACCCGATCCTTTCGTGCTGCCCATCCG
CAGGTTCACCTGCTTCTCTGGATCGGTGGCGCCGACAGTGGGCGGTCATT
TGCCCTCATGGTGGCGAACCACGCCATGCGAAAGTTGTTCCTGCGCTCCC
TCCGGGAAATATTGCGCACCTATCCCAGTTTGGATGGCATCGATCTCGAC
TGGGAGTTTCCGAGTGCCTACGATCGTGAGCGAATGCATCTCTCGCAGCT
GCTTTACGAGATTAGAACGGAGTGGCGGCGCGAAAAGCGTACCAATGATA
TTCTCTCGCTGGCGGTGGCTGCTCCCGAGGGAATCGCCTTCTATGCCTAC
GACATCCGAGAGATAAATCTGTACGCAGATTATGTAAATCTAATGTCCTA
TGATTTCCACTTCTACCGCGAGGATACACCATTTACCGGCTTAAATGCTC
CGCTTTATGCCCGCTCGCAGGAACGTTCGCTAATGGCCACGTTCAACATC
AATTACACGGTTCAGTGGTGGCTAAAAAGCGGTCTGGAGCCACAGCGACT
GGTTGTGGGTCTGCCCACCTACGGCCACTCATTTACGTTGGTTAATCCTT
TAAATCATCGCATAGGAGCTCCTGCTTCCGGTTACGGTAAATGTGGCCAA
CTGGGCTTCACCACACTGACCGAAACTTGTGAGTGTGTCACCAAGTTCTT
CAAGCCAAACTTGTCCTACGATGCCGAGAGCTGTTCGCCATATTTGAGCG
CTCTGCAGGAGTGGATATCGTACGAAAATCAAACGAGTATCGCCTGCAAG
GCGAACTATGTGAAATCCCTCAATCTGGGTGGCGTCATGGTCTTCTCGCT
GAACACCGATGATCTCAAGAACTCATGCAGCATTATGCCAAACTTGAAAT
ACAGCGAGAAACCTGTATTTCCGCTAACCCAGGCCATTAAGGACATCCTG
CGGGAGTCCCTGTGAAAGCTTTCTAGACCAT
BS12065.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:56:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cht11-RA | 1299 | CG3044-PA | 1..1299 | 17..1315 | 6495 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:56:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cht11-RA | 1576 | CG3044-RA | 47..1345 | 17..1315 | 6495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:56:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6848549..6849471 | 939..17 | 4615 | 100 | Minus |
| X | 23542271 | X | 6848108..6848486 | 1315..937 | 1895 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:56:03 has no hits.
BS12065.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:46:46 Download gff for
BS12065.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cht11-RA | 1..1299 | 17..1315 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:21:52 Download gff for
BS12065.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cht11-RA | 4..1325 | 2..1325 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:59:25 Download gff for
BS12065.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cht11-RA | 17..1314 | 17..1314 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:46:46 Download gff for
BS12065.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cht11-RA | 4..1325 | 2..1325 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:58:26 Download gff for
BS12065.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cht11-RA | 47..1344 | 17..1314 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:58:26 Download gff for
BS12065.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6848109..6848486 | 937..1314 | 100 | <- | Minus |
| X | 6848552..6849471 | 17..936 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:59:25 Download gff for
BS12065.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6742142..6742519 | 937..1314 | 100 | <- | Minus |
| arm_X | 6742585..6743504 | 17..936 | 100 | | Minus |
BS12065.pep Sequence
Translation from 16 to 1314
> BS12065.pep
MGNYEKLDGSSAGRITDELSRKEQRNCSLRTLVCWSALLFSLLCLCLGFI
GLGLLGIQTGEVHKVGQRLVCYYASDGTHNLSLLDVPGDLCTHINIGPAT
LDNATIVLPDTLRQVLQNDTRSFRAAHPQVHLLLWIGGADSGRSFALMVA
NHAMRKLFLRSLREILRTYPSLDGIDLDWEFPSAYDRERMHLSQLLYEIR
TEWRREKRTNDILSLAVAAPEGIAFYAYDIREINLYADYVNLMSYDFHFY
REDTPFTGLNAPLYARSQERSLMATFNINYTVQWWLKSGLEPQRLVVGLP
TYGHSFTLVNPLNHRIGAPASGYGKCGQLGFTTLTETCECVTKFFKPNLS
YDAESCSPYLSALQEWISYENQTSIACKANYVKSLNLGGVMVFSLNTDDL
KNSCSIMPNLKYSEKPVFPLTQAIKDILRESL*
BS12065.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cht11-PA | 432 | CG3044-PA | 1..432 | 1..432 | 2283 | 100 | Plus |
| Cht6-PF | 1367 | CG43374-PF | 31..408 | 68..432 | 466 | 31.4 | Plus |
| Cht6-PG | 1580 | CG43374-PG | 31..408 | 68..432 | 466 | 31.4 | Plus |
| Cht6-PH | 2225 | CG43374-PH | 31..408 | 68..432 | 466 | 31.4 | Plus |
| Cht6-PI | 2574 | CG43374-PI | 31..408 | 68..432 | 466 | 31.4 | Plus |
