Clone BS12066 Report

Search the DGRC for BS12066

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:120
Well:66
Vector:pDNR-Dual
Associated Gene/TranscriptCG2150-RA
Protein status:BS12066.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12066.3prime Sequence

597 bp (597 high quality bases) assembled on 2006-06-16

> BS12066.3prime
ATGGTCTAGAAAGCTTCTAGAAGGGCGCTCCATAGCTGCCGCTGGGCCTT
GAAGGGGCTCCATACGATCCGGATGGGGCGCTGGGATATCCACCGCCGCC
ACCTCCCTGCTGCGAGCTCTGCTGGGCGAACTGAGCCACCTGGATGGCCT
GGCGGACGCCTTCCAGGTCGATGCCCACGACACGGCCACCGCCTCCGATT
CCGGGGGCTCCGTAGCTGGTGGAAGGTGGACCGTAGCTGCTGGATGGGCC
ACTGGGGTAGCCACCACCGCCGCCACCACCGCCTCCACCACCACCGCCGC
CCTGCTTGCTCTCCTCGTTCAGCAGGATCTGGCGCACCTGCTCCAAAAGC
TGGGGATCCACGTTCTGGCCCTCGGACGTCTGGAAGCCGCCGCTCACAGC
CTGGTAGCCGCCGCCGCCACCACCGCCGCCACCTCCTAGTCCGCCTCCGA
ATCCGCCGCCGAAGCCACCTCCAAATCCGCCGCCACCACCACCTCCGCCG
CGGGGATAGTTATATCCGGATGGTGGCTCTGCTGCAGCAAGAGCGGCCAG
CGCGAACACTAAGAACACTGAGAAGGAGTTCATGTCGACTGATAACT

BS12066.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:27:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG2150-PA 567 CG2150-RA 1..567 583..17 2835 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:14:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG2150-RA 1170 CG2150-RA 108..675 583..16 2840 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:14:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31763799..31764349 16..566 2755 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:14:56 has no hits.

BS12066.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:47 Download gff for BS12066.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2150-PA 1..567 17..583 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:10:54 Download gff for BS12066.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2150-RA 102..679 11..589 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:48:55 Download gff for BS12066.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2150-RA 102..679 11..589 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:48:55 Download gff for BS12066.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 31763795..31764348 11..565 99 <- Plus
3R 31764648..31764671 566..589 92   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:10:54 Download gff for BS12066.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27589517..27590070 11..565 99 <- Plus
arm_3R 27590370..27590393 566..589 92   Plus

BS12066.5prime Sequence

597 bp (597 high quality bases) assembled on 2006-06-16

> BS12066.5prime
GAAGTTATCAGTCGACATGAACTCCTTCTCAGTGTTCTTAGTGTTCGCGC
TGGCCGCTCTTGCTGCAGCAGAGCCACCATCCGGATATAACTATCCCCGC
GGCGGAGGTGGTGGTGGCGGCGGATTTGGAGGTGGCTTCGGCGGCGGATT
CGGAGGCGGACTAGGAGGTGGCGGCGGTGGTGGCGGCGGCGGCTACCAGG
CTGTGAGCGGCGGCTTCCAGACGTCCGAGGGCCAGAACGTGGATCCCCAG
CTTTTGGAGCAGGTGCGCCAGATCCTGCTGAACGAGGAGAGCAAGCAGGG
CGGCGGTGGTGGTGGAGGCGGTGGTGGCGGCGGTGGTGGCTACCCCAGTG
GCCCATCCAGCAGCTACGGTCCACCTTCCACCAGCTACGGAGCCCCCGGA
ATCGGAGGCGGTGGCCGTGTCGTGGGCATCGACCTGGAAGGCGTCCGCCA
GGCCATCCAGGTGGCTCAGTTCGCCCAGCAGAGCTCGCAGCAGGGAGGTG
GCGGCGGTGGATATCCCAGCGCCCCATCCGGATCGTATGGAGCCCCTTCA
AGGCCCAGCGGCAGCTATGGAGCGCCCTTCTAGAAGCTTTCTAGACC

BS12066.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:27:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG2150-PA 567 CG2150-RA 1..567 17..583 2835 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:43:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG2150-RA 1170 CG2150-RA 108..675 17..584 2840 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:43:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31763799..31764349 584..34 2755 100 Minus
Blast to na_te.dros performed on 2015-01-30 17:43:54 has no hits.

BS12066.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:47 Download gff for BS12066.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2150-PA 1..567 17..583 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:49:38 Download gff for BS12066.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2150-RA 102..679 11..589 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:04:35 Download gff for BS12066.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2150-RA 102..679 11..589 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:04:35 Download gff for BS12066.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 31763795..31764348 35..589 99 <- Minus
3R 31764648..31764671 11..34 92   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:49:38 Download gff for BS12066.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27589517..27590070 35..589 99 <- Minus
arm_3R 27590370..27590393 11..34 92   Minus

BS12066.complete Sequence

599 bp assembled on 2006-11-01

GenBank Submission: FJ637056

> BS12066.complete
GAAGTTATCAGTCGACATGAACTCCTTCTCAGTGTTCTTAGTGTTCGCGC
TGGCCGCTCTTGCTGCAGCAGAGCCACCATCCGGATATAACTATCCCCGC
GGCGGAGGTGGTGGTGGCGGCGGATTTGGAGGTGGCTTCGGCGGCGGATT
CGGAGGCGGACTAGGAGGTGGCGGCGGTGGTGGCGGCGGCGGCTACCAGG
CTGTGAGCGGCGGCTTCCAGACGTCCGAGGGCCAGAACGTGGATCCCCAG
CTTTTGGAGCAGGTGCGCCAGATCCTGCTGAACGAGGAGAGCAAGCAGGG
CGGCGGTGGTGGTGGAGGCGGTGGTGGCGGCGGTGGTGGCTACCCCAGTG
GCCCATCCAGCAGCTACGGTCCACCTTCCACCAGCTACGGAGCCCCCGGA
ATCGGAGGCGGTGGCCGTGTCGTGGGCATCGACCTGGAAGGCGTCCGCCA
GGCCATCCAGGTGGCTCAGTTCGCCCAGCAGAGCTCGCAGCAGGGAGGTG
GCGGCGGTGGATATCCCAGCGCCCCATCCGGATCGTATGGAGCCCCTTCA
AGGCCCAGCGGCAGCTATGGAGCGCCCTTCTAGAAGCTTTCTAGACCAT

BS12066.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:30:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG2150-RA 567 CG2150-PA 1..567 17..583 2835 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:30:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG2150-RA 1170 CG2150-RA 108..675 17..584 2840 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:30:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31763799..31764349 584..34 2755 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:30:51 has no hits.

BS12066.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:47:31 Download gff for BS12066.complete
Subject Subject Range Query Range Percent Splice Strand
CG2150-RA 1..567 17..583 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:35:28 Download gff for BS12066.complete
Subject Subject Range Query Range Percent Splice Strand
CG2150-RA 96..673 11..589 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:30:19 Download gff for BS12066.complete
Subject Subject Range Query Range Percent Splice Strand
CG2150-RA 108..674 17..583 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:47:31 Download gff for BS12066.complete
Subject Subject Range Query Range Percent Splice Strand
CG2150-RA 96..673 11..589 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:20:12 Download gff for BS12066.complete
Subject Subject Range Query Range Percent Splice Strand
CG2150-RA 108..674 17..583 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:20:12 Download gff for BS12066.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31763800..31764348 35..583 100 <- Minus
3R 31764648..31764665 17..34 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:30:19 Download gff for BS12066.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27589522..27590070 35..583 100 <- Minus
arm_3R 27590370..27590387 17..34 100   Minus

BS12066.pep Sequence

Translation from 16 to 582

> BS12066.pep
MNSFSVFLVFALAALAAAEPPSGYNYPRGGGGGGGGFGGGFGGGFGGGLG
GGGGGGGGGYQAVSGGFQTSEGQNVDPQLLEQVRQILLNEESKQGGGGGG
GGGGGGGGYPSGPSSSYGPPSTSYGAPGIGGGGRVVGIDLEGVRQAIQVA
QFAQQSSQQGGGGGGYPSAPSGSYGAPSRPSGSYGAPF*

BS12066.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:26:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG2150-PA 188 CG2150-PA 1..188 1..188 1010 100 Plus
TwdlT-PA 286 CG5812-PA 4..124 7..165 261 42.4 Plus
Cpr47Ef-PC 612 CG13214-PC 330..499 21..182 255 40.9 Plus
Cpr47Ef-PD 601 CG13214-PD 330..483 21..187 252 39.9 Plus
CG5172-PD 172 CG5172-PD 24..169 29..182 235 40.4 Plus
Cpr47Ef-PC 612 CG13214-PC 234..417 20..185 232 38 Plus
Cpr47Ef-PD 601 CG13214-PD 234..417 20..185 232 38 Plus
Cpr47Ef-PC 612 CG13214-PC 364..533 14..187 219 37.2 Plus
Cpr47Ef-PC 612 CG13214-PC 427..600 11..185 219 38.4 Plus
Cpr47Ef-PC 612 CG13214-PC 273..442 29..188 216 37.5 Plus
Cpr47Ef-PD 601 CG13214-PD 273..442 29..188 216 37.5 Plus
Cpr47Ef-PD 601 CG13214-PD 431..589 21..185 213 40.1 Plus
Cpr47Ef-PC 612 CG13214-PC 395..562 21..187 208 38.1 Plus
Cpr47Ef-PC 612 CG13214-PC 422..572 28..187 204 35.7 Plus
Cpr47Ef-PC 612 CG13214-PC 29..130 11..123 188 42.1 Plus
Cpr47Ef-PD 601 CG13214-PD 29..130 11..123 188 42.1 Plus
Cpr47Ef-PC 612 CG13214-PC 8..127 8..177 163 33.9 Plus
Cpr47Ef-PD 601 CG13214-PD 8..127 8..177 163 33.9 Plus
Cpr47Ef-PD 601 CG13214-PD 479..588 14..134 161 42.6 Plus
Cpr47Ef-PC 612 CG13214-PC 233..352 49..185 149 35.5 Plus
Cpr47Ef-PD 601 CG13214-PD 233..352 49..185 149 35.5 Plus