Clone Sequence Records
BS12066.3prime Sequence
597 bp (597 high quality bases) assembled on 2006-06-16
> BS12066.3prime
ATGGTCTAGAAAGCTTCTAGAAGGGCGCTCCATAGCTGCCGCTGGGCCTT
GAAGGGGCTCCATACGATCCGGATGGGGCGCTGGGATATCCACCGCCGCC
ACCTCCCTGCTGCGAGCTCTGCTGGGCGAACTGAGCCACCTGGATGGCCT
GGCGGACGCCTTCCAGGTCGATGCCCACGACACGGCCACCGCCTCCGATT
CCGGGGGCTCCGTAGCTGGTGGAAGGTGGACCGTAGCTGCTGGATGGGCC
ACTGGGGTAGCCACCACCGCCGCCACCACCGCCTCCACCACCACCGCCGC
CCTGCTTGCTCTCCTCGTTCAGCAGGATCTGGCGCACCTGCTCCAAAAGC
TGGGGATCCACGTTCTGGCCCTCGGACGTCTGGAAGCCGCCGCTCACAGC
CTGGTAGCCGCCGCCGCCACCACCGCCGCCACCTCCTAGTCCGCCTCCGA
ATCCGCCGCCGAAGCCACCTCCAAATCCGCCGCCACCACCACCTCCGCCG
CGGGGATAGTTATATCCGGATGGTGGCTCTGCTGCAGCAAGAGCGGCCAG
CGCGAACACTAAGAACACTGAGAAGGAGTTCATGTCGACTGATAACT
BS12066.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:27:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2150-PA | 567 | CG2150-RA | 1..567 | 583..17 | 2835 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:14:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2150-RA | 1170 | CG2150-RA | 108..675 | 583..16 | 2840 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:14:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31763799..31764349 | 16..566 | 2755 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:14:56 has no hits.
BS12066.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:47 Download gff for
BS12066.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2150-PA | 1..567 | 17..583 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:10:54 Download gff for
BS12066.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2150-RA | 102..679 | 11..589 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:48:55 Download gff for
BS12066.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2150-RA | 102..679 | 11..589 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:48:55 Download gff for
BS12066.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31763795..31764348 | 11..565 | 99 | <- | Plus |
3R | 31764648..31764671 | 566..589 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:10:54 Download gff for
BS12066.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27589517..27590070 | 11..565 | 99 | <- | Plus |
arm_3R | 27590370..27590393 | 566..589 | 92 | | Plus |
BS12066.5prime Sequence
597 bp (597 high quality bases) assembled on 2006-06-16
> BS12066.5prime
GAAGTTATCAGTCGACATGAACTCCTTCTCAGTGTTCTTAGTGTTCGCGC
TGGCCGCTCTTGCTGCAGCAGAGCCACCATCCGGATATAACTATCCCCGC
GGCGGAGGTGGTGGTGGCGGCGGATTTGGAGGTGGCTTCGGCGGCGGATT
CGGAGGCGGACTAGGAGGTGGCGGCGGTGGTGGCGGCGGCGGCTACCAGG
CTGTGAGCGGCGGCTTCCAGACGTCCGAGGGCCAGAACGTGGATCCCCAG
CTTTTGGAGCAGGTGCGCCAGATCCTGCTGAACGAGGAGAGCAAGCAGGG
CGGCGGTGGTGGTGGAGGCGGTGGTGGCGGCGGTGGTGGCTACCCCAGTG
GCCCATCCAGCAGCTACGGTCCACCTTCCACCAGCTACGGAGCCCCCGGA
ATCGGAGGCGGTGGCCGTGTCGTGGGCATCGACCTGGAAGGCGTCCGCCA
GGCCATCCAGGTGGCTCAGTTCGCCCAGCAGAGCTCGCAGCAGGGAGGTG
GCGGCGGTGGATATCCCAGCGCCCCATCCGGATCGTATGGAGCCCCTTCA
AGGCCCAGCGGCAGCTATGGAGCGCCCTTCTAGAAGCTTTCTAGACC
BS12066.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:27:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2150-PA | 567 | CG2150-RA | 1..567 | 17..583 | 2835 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:43:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2150-RA | 1170 | CG2150-RA | 108..675 | 17..584 | 2840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:43:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31763799..31764349 | 584..34 | 2755 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 17:43:54 has no hits.
BS12066.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:47 Download gff for
BS12066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2150-PA | 1..567 | 17..583 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:49:38 Download gff for
BS12066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2150-RA | 102..679 | 11..589 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:04:35 Download gff for
BS12066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2150-RA | 102..679 | 11..589 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:04:35 Download gff for
BS12066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31763795..31764348 | 35..589 | 99 | <- | Minus |
3R | 31764648..31764671 | 11..34 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:49:38 Download gff for
BS12066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27589517..27590070 | 35..589 | 99 | <- | Minus |
arm_3R | 27590370..27590393 | 11..34 | 92 | | Minus |
BS12066.complete Sequence
599 bp assembled on 2006-11-01
GenBank Submission: FJ637056
> BS12066.complete
GAAGTTATCAGTCGACATGAACTCCTTCTCAGTGTTCTTAGTGTTCGCGC
TGGCCGCTCTTGCTGCAGCAGAGCCACCATCCGGATATAACTATCCCCGC
GGCGGAGGTGGTGGTGGCGGCGGATTTGGAGGTGGCTTCGGCGGCGGATT
CGGAGGCGGACTAGGAGGTGGCGGCGGTGGTGGCGGCGGCGGCTACCAGG
CTGTGAGCGGCGGCTTCCAGACGTCCGAGGGCCAGAACGTGGATCCCCAG
CTTTTGGAGCAGGTGCGCCAGATCCTGCTGAACGAGGAGAGCAAGCAGGG
CGGCGGTGGTGGTGGAGGCGGTGGTGGCGGCGGTGGTGGCTACCCCAGTG
GCCCATCCAGCAGCTACGGTCCACCTTCCACCAGCTACGGAGCCCCCGGA
ATCGGAGGCGGTGGCCGTGTCGTGGGCATCGACCTGGAAGGCGTCCGCCA
GGCCATCCAGGTGGCTCAGTTCGCCCAGCAGAGCTCGCAGCAGGGAGGTG
GCGGCGGTGGATATCCCAGCGCCCCATCCGGATCGTATGGAGCCCCTTCA
AGGCCCAGCGGCAGCTATGGAGCGCCCTTCTAGAAGCTTTCTAGACCAT
BS12066.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:30:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2150-RA | 567 | CG2150-PA | 1..567 | 17..583 | 2835 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:30:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2150-RA | 1170 | CG2150-RA | 108..675 | 17..584 | 2840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:30:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31763799..31764349 | 584..34 | 2755 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:30:51 has no hits.
BS12066.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:47:31 Download gff for
BS12066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2150-RA | 1..567 | 17..583 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:35:28 Download gff for
BS12066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2150-RA | 96..673 | 11..589 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:30:19 Download gff for
BS12066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2150-RA | 108..674 | 17..583 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:47:31 Download gff for
BS12066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2150-RA | 96..673 | 11..589 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:20:12 Download gff for
BS12066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2150-RA | 108..674 | 17..583 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:20:12 Download gff for
BS12066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31763800..31764348 | 35..583 | 100 | <- | Minus |
3R | 31764648..31764665 | 17..34 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:30:19 Download gff for
BS12066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27589522..27590070 | 35..583 | 100 | <- | Minus |
arm_3R | 27590370..27590387 | 17..34 | 100 | | Minus |
BS12066.pep Sequence
Translation from 16 to 582
> BS12066.pep
MNSFSVFLVFALAALAAAEPPSGYNYPRGGGGGGGGFGGGFGGGFGGGLG
GGGGGGGGGYQAVSGGFQTSEGQNVDPQLLEQVRQILLNEESKQGGGGGG
GGGGGGGGYPSGPSSSYGPPSTSYGAPGIGGGGRVVGIDLEGVRQAIQVA
QFAQQSSQQGGGGGGYPSAPSGSYGAPSRPSGSYGAPF*
BS12066.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:26:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2150-PA | 188 | CG2150-PA | 1..188 | 1..188 | 1010 | 100 | Plus |
TwdlT-PA | 286 | CG5812-PA | 4..124 | 7..165 | 261 | 42.4 | Plus |
Cpr47Ef-PC | 612 | CG13214-PC | 330..499 | 21..182 | 255 | 40.9 | Plus |
Cpr47Ef-PD | 601 | CG13214-PD | 330..483 | 21..187 | 252 | 39.9 | Plus |
CG5172-PD | 172 | CG5172-PD | 24..169 | 29..182 | 235 | 40.4 | Plus |
Cpr47Ef-PC | 612 | CG13214-PC | 234..417 | 20..185 | 232 | 38 | Plus |
Cpr47Ef-PD | 601 | CG13214-PD | 234..417 | 20..185 | 232 | 38 | Plus |
Cpr47Ef-PC | 612 | CG13214-PC | 364..533 | 14..187 | 219 | 37.2 | Plus |
Cpr47Ef-PC | 612 | CG13214-PC | 427..600 | 11..185 | 219 | 38.4 | Plus |
Cpr47Ef-PC | 612 | CG13214-PC | 273..442 | 29..188 | 216 | 37.5 | Plus |
Cpr47Ef-PD | 601 | CG13214-PD | 273..442 | 29..188 | 216 | 37.5 | Plus |
Cpr47Ef-PD | 601 | CG13214-PD | 431..589 | 21..185 | 213 | 40.1 | Plus |
Cpr47Ef-PC | 612 | CG13214-PC | 395..562 | 21..187 | 208 | 38.1 | Plus |
Cpr47Ef-PC | 612 | CG13214-PC | 422..572 | 28..187 | 204 | 35.7 | Plus |
Cpr47Ef-PC | 612 | CG13214-PC | 29..130 | 11..123 | 188 | 42.1 | Plus |
Cpr47Ef-PD | 601 | CG13214-PD | 29..130 | 11..123 | 188 | 42.1 | Plus |
Cpr47Ef-PC | 612 | CG13214-PC | 8..127 | 8..177 | 163 | 33.9 | Plus |
Cpr47Ef-PD | 601 | CG13214-PD | 8..127 | 8..177 | 163 | 33.9 | Plus |
Cpr47Ef-PD | 601 | CG13214-PD | 479..588 | 14..134 | 161 | 42.6 | Plus |
Cpr47Ef-PC | 612 | CG13214-PC | 233..352 | 49..185 | 149 | 35.5 | Plus |
Cpr47Ef-PD | 601 | CG13214-PD | 233..352 | 49..185 | 149 | 35.5 | Plus |