Clone BS12067 Report

Search the DGRC for BS12067

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:120
Well:67
Vector:pDNR-Dual
Associated Gene/TranscriptCG14153-RA
Protein status:BS12067.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12067.3prime Sequence

744 bp (744 high quality bases) assembled on 2006-06-16

> BS12067.3prime
ATGGTCTAGAAAGCTTCTACTTTTCAACAAAATCCTCGTTGGTGTTGTAA
ACTGGCTGCAGGCGTCTTGGATATTTACGCAAATATTCGGCAAAATGTTG
GGCATATTTGGCCTGGTAATCACGACGCCTCCAGGGCTGAGCGGGTTCAT
AGAAATTCTCCTTATTATTGTACGTATTTAGATAGTTATTTGTGGCCAAT
GAGCGACTGCCGCCAATTTGGACCACTTGCTCCTCATCGCGACCCGAATC
GCTGGTCTCCAATTCCGGATTCCTTTGTGGATATGGCTGAAGTTGAGGTG
GAATTTGAGATTGAGGATAGCGCAGAGGTGTTGATGGCGTAGTCTCCTGT
TGTTGATAGTAAAAGTAGCCGGGCACATTGTTATAGTTGTGATTGGGAGC
ATGTGTTGGGTCTTCCCTTCTCCAATTTGGATATGCTTGTCTATACGCAG
GTTCCGCAACATAATAACCATTACTTTTTGGATACTGCTGCTGTTCCTGG
GCACTGTACTGATTATCATTCACTATGATAGGCGGACCCGACCATATCGA
TTGTACATCTGGATTGGCATAGTTGGATTGAGCGTAGTTGGATGTGGTAA
TTGCATAAGCACTGCCATAAGGTGATGCATACTGAGCTCTCCCACAAACT
GCATCGATCATCAGGGGCATAAGTGCACATAGCCAGCTCGACGAGCTGCT
CTTCACGATCCGTCCTGTTTGCGGCTTCATGTCGACTGATAACT

BS12067.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:27:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG14153-PA 714 CG14153-RA 1..714 730..17 3570 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:51:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG14153-RA 1022 CG14153-RA 7..729 738..17 3575 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:51:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10643656..10644322 683..17 3335 100 Minus
3L 28110227 3L 10643543..10643590 730..683 240 100 Minus
Blast to na_te.dros performed on 2015-02-12 03:51:41 has no hits.

BS12067.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:47 Download gff for BS12067.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14153-PA 1..714 17..730 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:30:57 Download gff for BS12067.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14153-RA 1..729 17..742 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:58:56 Download gff for BS12067.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14153-RA 1..729 17..742 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:58:56 Download gff for BS12067.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 10643534..10643590 683..738 96 -> Minus
3L 10643657..10644322 17..682 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:30:57 Download gff for BS12067.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10636634..10636690 683..738 96 -> Minus
arm_3L 10636757..10637422 17..682 100   Minus

BS12067.5prime Sequence

744 bp (744 high quality bases) assembled on 2006-06-16

> BS12067.5prime
GAAGTTATCAGTCGACATGAAGCCGCAAACAGGACGGATCGTGAAGAGCA
GCTCGTCGAGCTGGCTATGTGCACTTATGCCCCTGATGATCGATGCAGTT
TGTGGGAGAGCTCAGTATGCATCACCTTATGGCAGTGCTTATGCAATTAC
CACATCCAACTACGCTCAATCCAACTATGCCAATCCAGATGTACAATCGA
TATGGTCGGGTCCGCCTATCATAGTGAATGATAATCAGTACAGTGCCCAG
GAACAGCAGCAGTATCCAAAAAGTAATGGTTATTATGTTGCGGAACCTGC
GTATAGACAAGCATATCCAAATTGGAGAAGGGAAGACCCAACACATGCTC
CCAATCACAACTATAACAATGTGCCCGGCTACTTTTACTATCAACAACAG
GAGACTACGCCATCAACACCTCTGCGCTATCCTCAATCTCAAATTCCACC
TCAACTTCAGCCATATCCACAAAGGAATCCGGAATTGGAGACCAGCGATT
CGGGTCGCGATGAGGAGCAAGTGGTCCAAATTGGCGGCAGTCGCTCATTG
GCCACAAATAACTATCTAAATACGTACAATAATAAGGAGAATTTCTATGA
ACCCGCTCAGCCCTGGAGGCGTCGTGATTACCAGGCCAAATATGCCCAAC
ATTTTGCCGAATATTTGCGTAAATATCCAAGACGCCTGCAGCCAGTTTAC
AACACCAACGAGGATTTTGTTGAAAAGTAGAAGCTTTCTAGACC

BS12067.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:27:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG14153-PA 714 CG14153-RA 1..714 17..730 3570 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:44:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG14153-RA 1022 CG14153-RA 7..729 9..730 3575 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:44:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10643656..10644322 64..730 3335 100 Plus
3L 28110227 3L 10643543..10643590 17..64 240 100 Plus
Blast to na_te.dros performed on 2015-01-30 17:44:52 has no hits.

BS12067.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:47 Download gff for BS12067.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14153-PA 1..714 17..730 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:49:47 Download gff for BS12067.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14153-RA 1..729 5..730 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:04:43 Download gff for BS12067.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14153-RA 1..729 5..730 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:04:43 Download gff for BS12067.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 10643534..10643590 9..64 96 -> Plus
3L 10643657..10644322 65..730 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:49:47 Download gff for BS12067.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10636634..10636690 9..64 96 -> Plus
arm_3L 10636757..10637422 65..730 100   Plus

BS12067.complete Sequence

746 bp assembled on 2006-11-01

GenBank Submission: FJ637057

> BS12067.complete
GAAGTTATCAGTCGACATGAAGCCGCAAACAGGACGGATCGTGAAGAGCA
GCTCGTCGAGCTGGCTATGTGCACTTATGCCCCTGATGATCGATGCAGTT
TGTGGGAGAGCTCAGTATGCATCACCTTATGGCAGTGCTTATGCAATTAC
CACATCCAACTACGCTCAATCCAACTATGCCAATCCAGATGTACAATCGA
TATGGTCGGGTCCGCCTATCATAGTGAATGATAATCAGTACAGTGCCCAG
GAACAGCAGCAGTATCCAAAAAGTAATGGTTATTATGTTGCGGAACCTGC
GTATAGACAAGCATATCCAAATTGGAGAAGGGAAGACCCAACACATGCTC
CCAATCACAACTATAACAATGTGCCCGGCTACTTTTACTATCAACAACAG
GAGACTACGCCATCAACACCTCTGCGCTATCCTCAATCTCAAATTCCACC
TCAACTTCAGCCATATCCACAAAGGAATCCGGAATTGGAGACCAGCGATT
CGGGTCGCGATGAGGAGCAAGTGGTCCAAATTGGCGGCAGTCGCTCATTG
GCCACAAATAACTATCTAAATACGTACAATAATAAGGAGAATTTCTATGA
ACCCGCTCAGCCCTGGAGGCGTCGTGATTACCAGGCCAAATATGCCCAAC
ATTTTGCCGAATATTTGCGTAAATATCCAAGACGCCTGCAGCCAGTTTAC
AACACCAACGAGGATTTTGTTGAAAAGTAGAAGCTTTCTAGACCAT

BS12067.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:41:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG14153-RA 714 CG14153-PA 1..714 17..730 3570 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:41:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG14153-RA 1022 CG14153-RA 16..729 17..730 3570 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:41:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10643656..10644322 64..730 3335 100 Plus
3L 28110227 3L 10643543..10643590 17..64 240 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:41:30 has no hits.

BS12067.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:46:47 Download gff for BS12067.complete
Subject Subject Range Query Range Percent Splice Strand
CG14153-RA 1..714 17..730 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:21:54 Download gff for BS12067.complete
Subject Subject Range Query Range Percent Splice Strand
CG14153-RA 2..724 9..730 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:29:41 Download gff for BS12067.complete
Subject Subject Range Query Range Percent Splice Strand
CG14153-RA 16..729 17..730 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:46:47 Download gff for BS12067.complete
Subject Subject Range Query Range Percent Splice Strand
CG14153-RA 2..724 9..730 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:36:21 Download gff for BS12067.complete
Subject Subject Range Query Range Percent Splice Strand
CG14153-RA 16..729 17..730 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:36:21 Download gff for BS12067.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10643543..10643590 17..64 100 -> Plus
3L 10643657..10644322 65..730 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:29:41 Download gff for BS12067.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10636643..10636690 17..64 100 -> Plus
arm_3L 10636757..10637422 65..730 100   Plus

BS12067.pep Sequence

Translation from 16 to 729

> BS12067.pep
MKPQTGRIVKSSSSSWLCALMPLMIDAVCGRAQYASPYGSAYAITTSNYA
QSNYANPDVQSIWSGPPIIVNDNQYSAQEQQQYPKSNGYYVAEPAYRQAY
PNWRREDPTHAPNHNYNNVPGYFYYQQQETTPSTPLRYPQSQIPPQLQPY
PQRNPELETSDSGRDEEQVVQIGGSRSLATNNYLNTYNNKENFYEPAQPW
RRRDYQAKYAQHFAEYLRKYPRRLQPVYNTNEDFVEK*

BS12067.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG14153-PA 237 CG14153-PA 1..237 1..237 1300 100 Plus