BS12068.complete Sequence
1691 bp assembled on 2008-08-14
GenBank Submission: FJ637058
> BS12068.complete
GAAGTTATCAGTCGACATGAAGGCAAAAAAGAAGTTGGGCGTGGGATTGA
GCCGCCAGGAACGACAGGTGCTCGTCATCGGGGAGATCATTCAGGAGCTG
CTGAAGGCGCACGAAGCCAAAAAGGATGTAAACCTTAATCGGATGAAATC
ATTGGTGGCCTCCAAATATGGACTGGACAGTTCGCCGCGCCTGGTCGACA
TAATTGCTGCCGTGCCGCAGGACGCCAAAAAAATTCTGCTTCCAAAGCTG
AGGGCAAAGCCCATTCGCACAGCAAGTGGCATCGCCGTGGTCGCCGTCAT
GTGCAAGCCGCATCGTTGTCCGCACATCAATATGACCGGCAATATATGCG
TCTATTGTCCCGGCGGACCGGACAGCGACTTTGAGTACTCGACACAGTCG
TACACAGGCTACGAGCCGACCTCGATGCGAGCCATCCGGTCGCGGTACGA
TCCTTTTCTTCAGACCCGACACCGCGTTGAACAGCTGAAGCAGCTGGGAC
ACAGTGTGGACAAGGTGGAGTTCATCGTAATGGGCGGTACGTTCATGTGC
CTGCCGGAGGAGTACCGCGACTACTTTATCCGCAACCTACACGACGCCCT
CTCCGGCCACAGCAGCGCCAATGTGGCGGAAGCCGTACGCTACTCGGAGA
AGTCACGCACAAAGTGCATTGGCATCACCATAGAAACAAGGCCAGATTAC
TGCCTAAAGCGGCACATATCGGATATGCTTAGCTATGGTTGCACCCGGCT
GGAAATCGGTGTGCAATCGGTTTACGAAGACGTGGCCAGGGATACGAACC
GCGGACACACGGTGCGAGCGGTGTGCGAGAGCTTCCAGCTGGGCAAGGAT
GCTGGCTATAAGATCGTGACGCACATGATGCCTGATCTTCCCAATGTTGA
CTTTGAACGCGACATCGAGCAGTTTATCGAGTACTTTGAGAACCCTGCCT
TCCGCTCTGACGGCCTAAAGATCTATCCCACGCTCGTCATTCGCGGCACT
GGTCTCTACGAGTTATGGAAAACCGGGCGATATAAGTCATATCCGCCATC
CATGCTTGTGGACTTAGTGGCGAAGATTTTGGCCCTTGTACCACCATGGA
CGCGAGTGTACCGCGTACAGCGCGACATTCCCATGCCGCTTGTTAGTTCC
GGCGTGGAACACGGAAATCTCCGTGAACTGGCGCTGGCCCGCATGAAGGA
TCTTGGAACCACTTGCCGCGATGTTAGAACCCGCGAAGTTGGCATTCAGG
AAATCCACAACAAGGTGCGCCCTTACGAAATTGAGCTAATTCGTCGGGAC
TATGTGGCCAATGGCGGCTGGGAAACGTTCCTCTCATACGAAGATCCTGA
ACAGGACATTCTCGTAGGCCTTCTTAGGCTGCGAAAGTGCTCACCGGATA
CCTTCCGCCCGGAACTGAAGGGCGAATGCTCCATTGTGAGGGAGCTGCAC
GTATATGGCTCAGTCGTGCCGGTTAATGCTAGGGATCCCACCAAGTTTCA
GCACCAGGGCTTCGGTATGTTGCTGATGGAGGAGGCGGAGCGAATTGCTC
GAGAGGAGCACGGCAGCACAAAACTGGCGGTCATATCGGGAGTGGGCACC
AGAAACTACTATCGCAAAATGGGATACCAACTTGACGGACCCTACATGTC
AAAGAGCATAGAAGAAAATAACTAGAAGCTTTCTAGACCAT
BS12068.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:56:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Elp3-RA | 1659 | CG15433-PA | 1..1659 | 17..1675 | 8295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:56:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Elp3-RA | 1863 | CG15433-RA | 80..1738 | 17..1675 | 8295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:56:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4445193..4446058 | 281..1146 | 4330 | 100 | Plus |
| 2L | 23513712 | 2L | 4446108..4446640 | 1143..1675 | 2665 | 100 | Plus |
| 2L | 23513712 | 2L | 4444894..4445136 | 38..280 | 1215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:56:51 has no hits.
BS12068.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:46:12 Download gff for
BS12068.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Elp3-RA | 71..1738 | 7..1675 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:34:53 Download gff for
BS12068.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Elp3-RA | 80..1724 | 17..1661 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:12:11 Download gff for
BS12068.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Elp3-RA | 80..1724 | 17..1661 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:40:58 Download gff for
BS12068.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Elp3-RA | 80..1724 | 17..1661 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:40:58 Download gff for
BS12068.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4444811..4444832 | 17..38 | 100 | -> | Plus |
| 2L | 4444895..4445136 | 39..280 | 100 | -> | Plus |
| 2L | 4445193..4446058 | 281..1146 | 100 | -> | Plus |
| 2L | 4446112..4446626 | 1147..1661 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:34:53 Download gff for
BS12068.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4444811..4444832 | 17..38 | 100 | -> | Plus |
| arm_2L | 4444895..4445136 | 39..280 | 100 | -> | Plus |
| arm_2L | 4445193..4446058 | 281..1146 | 100 | -> | Plus |
| arm_2L | 4446112..4446626 | 1147..1661 | 100 | | Plus |
BS12068.pep Sequence
Translation from 16 to 1674
> BS12068.pep
MKAKKKLGVGLSRQERQVLVIGEIIQELLKAHEAKKDVNLNRMKSLVASK
YGLDSSPRLVDIIAAVPQDAKKILLPKLRAKPIRTASGIAVVAVMCKPHR
CPHINMTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRSRYDPFLQT
RHRVEQLKQLGHSVDKVEFIVMGGTFMCLPEEYRDYFIRNLHDALSGHSS
ANVAEAVRYSEKSRTKCIGITIETRPDYCLKRHISDMLSYGCTRLEIGVQ
SVYEDVARDTNRGHTVRAVCESFQLGKDAGYKIVTHMMPDLPNVDFERDI
EQFIEYFENPAFRSDGLKIYPTLVIRGTGLYELWKTGRYKSYPPSMLVDL
VAKILALVPPWTRVYRVQRDIPMPLVSSGVEHGNLRELALARMKDLGTTC
RDVRTREVGIQEIHNKVRPYEIELIRRDYVANGGWETFLSYEDPEQDILV
GLLRLRKCSPDTFRPELKGECSIVRELHVYGSVVPVNARDPTKFQHQGFG
MLLMEEAERIAREEHGSTKLAVISGVGTRNYYRKMGYQLDGPYMSKSIEE
NN*
BS12068.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:11:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Elp3-PA | 552 | CG15433-PA | 1..552 | 1..552 | 2892 | 100 | Plus |
