Clone BS12069 Report

Search the DGRC for BS12069

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:120
Well:69
Vector:pDNR-Dual
Associated Gene/TranscriptCG14570-RA
Protein status:BS12069.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12069.3prime Sequence

717 bp (717 high quality bases) assembled on 2006-06-16

> BS12069.3prime
ATGGTCTAGAAAGCTTCTATTGCCTGGATGGGCGTCTGAAAGGCGCATTG
ACTATCAGGCGAGATGGCCGTGGGCGAAAAGGAATGTGGCGATCCACGAA
GGGCAAAGCCTGCGGAGTCGATGGGAACACTGGAGTAGGCCTAATAGCAT
TCACAATCTTGACCGCATCTGGCCGACGACGAACCGTAAGCTTAGCCGGC
CGTCGCTGCGGAGTCCGCAGAACCGGACGCTGCGGGCGGAAGGCAGAAAG
TCGGTTCAGAAGCGGCAGAACATACTGAGCCTGGGGTGGTAGCGGCAGAC
TTGCCAAATTAATTATAGCTGCGCTTTGTGGCAATGTGTTGGAGCTGTCA
TCATTGGCTGGCTGGTCTGGAGGTCCGTAGGTCTGATCGGGAGGTCCATA
AATTTGGTCCGGTGGGCCGTAGACCTCAGCTGGCGCTTCCACCAAAGACG
GTGGTCCGTATGTTTCAGGTGGAGGGCCATATGTATCCTCCGGTTGAGGA
AATTCAACCGCCTCCTCCGTTGGCAGGTCGAATGGCGGATCGGGGACCAG
GCCTGCTGGTGGATATGGGGCTTGTTCCTGTCTTTGCAGAAACCTTCCCG
CCGCGGGTCCTGGGAACCTCAGATGACTGCCTTCAATTCCATTCAGGCAA
AGAATGGAACAAAGCGCAAAGGTGACCAGAGAAGCACTTGGATAACCGGA
CATGTCGACTGATAACT

BS12069.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:27:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG14570-PA 687 CG14570-RA 1..687 703..17 3435 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:07:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG14570-RA 780 CG14570-RA 27..714 703..16 3440 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:07:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21729741..21730428 16..703 3440 100 Plus
Blast to na_te.dros performed on 2015-02-11 09:07:34 has no hits.

BS12069.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:48 Download gff for BS12069.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14570-PA 1..687 17..703 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:00:32 Download gff for BS12069.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14570-RA 18..719 8..711 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:53:47 Download gff for BS12069.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14570-RA 18..719 8..711 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:53:47 Download gff for BS12069.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 21729733..21730426 8..701 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:00:32 Download gff for BS12069.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21722833..21723526 8..701 99 -> Plus

BS12069.5prime Sequence

717 bp (717 high quality bases) assembled on 2006-06-16

> BS12069.5prime
GAAGTTATCAGTCGACATGTCCGGTTATCCAAGTGCTTCTCTGGTCACCT
TTGCGCTTTGTTCCATTCTTTGCCTGAATGGAATTGAAGGCAGTCATCTG
AGGTTCCCAGGACCCGCGGCGGGAAGGTTTCTGCAAAGACAGGAACAAGC
CCCATATCCACCAGCAGGCCTGGTCCCCGATCCGCCATTCGACCTGCCAA
CGGAGGAGGCGGTTGAATTTCCTCAACCGGAGGATACATATGGCCCTCCA
CCTGAAACATACGGACCACCGTCTTTGGTGGAAGCGCCAGCTGAGGTCTA
CGGCCCACCGGACCAAATTTATGGACCTCCCGATCAGACCTACGGACCTC
CAGACCAGCCAGCCAATGATGACAGCTCCAACACATTGCCACAAAGCGCA
GCTATAATTAATTTGGCAAGTCTGCCGCTACCACCCCAGGCTCAGTATGT
TCTGCCGCTTCTGAACCGACTTTCTGCCTTCCGCCCGCAGCGTCCGGTTC
TGCGGACTCCGCAGCGACGGCCGGCTAAGCTTACGGTTCGTCGTCGGCCA
GATGCGGTCAAGATTGTGAATGCTATTAGGCCTACTCCAGTGTTCCCATC
GACTCCGCAGGCTTTGCCCTTCGTGGATCGCCACATTCCTTTTCGCCCAC
GGCCATCTCGCCTGATAGTCAATGCGCCTTTCAGACGCCCATCCAGGCAA
TAGAAGCTTTCTAGACC

BS12069.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:27:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG14570-PA 687 CG14570-RA 1..687 17..703 3435 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:20:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG14570-RA 780 CG14570-RA 27..714 17..704 3440 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:20:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21729741..21730428 704..17 3440 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:20:52 has no hits.

BS12069.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:49 Download gff for BS12069.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14570-PA 1..687 17..703 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:05:26 Download gff for BS12069.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14570-RA 18..719 9..712 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:40:50 Download gff for BS12069.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14570-RA 18..719 9..712 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:40:50 Download gff for BS12069.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 21729733..21730426 19..712 99 -> Minus
3L 21868224..21868241 1..18 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:05:26 Download gff for BS12069.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21722833..21723526 19..712 99 -> Minus
arm_3L 21861324..21861341 1..18 94   Minus

BS12069.complete Sequence

719 bp assembled on 2006-11-01

GenBank Submission: FJ637059

> BS12069.complete
GAAGTTATCAGTCGACATGTCCGGTTATCCAAGTGCTTCTCTGGTCACCT
TTGCGCTTTGTTCCATTCTTTGCCTGAATGGAATTGAAGGCAGTCATCTG
AGGTTCCCAGGACCCGCGGCGGGAAGGTTTCTGCAAAGACAGGAACAAGC
CCCATATCCACCAGCAGGCCTGGTCCCCGATCCGCCATTCGACCTGCCAA
CGGAGGAGGCGGTTGAATTTCCTCAACCGGAGGATACATATGGCCCTCCA
CCTGAAACATACGGACCACCGTCTTTGGTGGAAGCGCCAGCTGAGGTCTA
CGGCCCACCGGACCAAATTTATGGACCTCCCGATCAGACCTACGGACCTC
CAGACCAGCCAGCCAATGATGACAGCTCCAACACATTGCCACAAAGCGCA
GCTATAATTAATTTGGCAAGTCTGCCGCTACCACCCCAGGCTCAGTATGT
TCTGCCGCTTCTGAACCGACTTTCTGCCTTCCGCCCGCAGCGTCCGGTTC
TGCGGACTCCGCAGCGACGGCCGGCTAAGCTTACGGTTCGTCGTCGGCCA
GATGCGGTCAAGATTGTGAATGCTATTAGGCCTACTCCAGTGTTCCCATC
GACTCCGCAGGCTTTGCCCTTCGTGGATCGCCACATTCCTTTTCGCCCAC
GGCCATCTCGCCTGATAGTCAATGCGCCTTTCAGACGCCCATCCAGGCAA
TAGAAGCTTTCTAGACCAT

BS12069.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:24:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG14570-RA 687 CG14570-PA 1..687 17..703 3435 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:24:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG14570-RA 780 CG14570-RA 27..714 17..704 3440 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:24:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21729741..21730428 704..17 3440 100 Minus
Blast to na_te.dros performed on 2014-11-28 08:24:57 has no hits.

BS12069.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:46:48 Download gff for BS12069.complete
Subject Subject Range Query Range Percent Splice Strand
CG14570-RA 1..687 17..703 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:40:34 Download gff for BS12069.complete
Subject Subject Range Query Range Percent Splice Strand
CG14570-RA 22..708 17..703 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:13:53 Download gff for BS12069.complete
Subject Subject Range Query Range Percent Splice Strand
CG14570-RA 27..713 17..703 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:46:49 Download gff for BS12069.complete
Subject Subject Range Query Range Percent Splice Strand
CG14570-RA 13..714 9..712 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:17:43 Download gff for BS12069.complete
Subject Subject Range Query Range Percent Splice Strand
CG14570-RA 27..713 17..703 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:17:43 Download gff for BS12069.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21729742..21730428 17..703 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:13:53 Download gff for BS12069.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21722842..21723528 17..703 100   Minus

BS12069.pep Sequence

Translation from 16 to 702

> BS12069.pep
MSGYPSASLVTFALCSILCLNGIEGSHLRFPGPAAGRFLQRQEQAPYPPA
GLVPDPPFDLPTEEAVEFPQPEDTYGPPPETYGPPSLVEAPAEVYGPPDQ
IYGPPDQTYGPPDQPANDDSSNTLPQSAAIINLASLPLPPQAQYVLPLLN
RLSAFRPQRPVLRTPQRRPAKLTVRRRPDAVKIVNAIRPTPVFPSTPQAL
PFVDRHIPFRPRPSRLIVNAPFRRPSRQ*

BS12069.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG14570-PA 228 CG14570-PA 1..228 1..228 1221 100 Plus
CG14568-PA 171 CG14568-PA 6..159 14..166 199 33.7 Plus
CG14569-PA 195 CG14569-PA 4..111 5..127 183 36.1 Plus