Clone Sequence Records
BS12069.3prime Sequence
717 bp (717 high quality bases) assembled on 2006-06-16
> BS12069.3prime
ATGGTCTAGAAAGCTTCTATTGCCTGGATGGGCGTCTGAAAGGCGCATTG
ACTATCAGGCGAGATGGCCGTGGGCGAAAAGGAATGTGGCGATCCACGAA
GGGCAAAGCCTGCGGAGTCGATGGGAACACTGGAGTAGGCCTAATAGCAT
TCACAATCTTGACCGCATCTGGCCGACGACGAACCGTAAGCTTAGCCGGC
CGTCGCTGCGGAGTCCGCAGAACCGGACGCTGCGGGCGGAAGGCAGAAAG
TCGGTTCAGAAGCGGCAGAACATACTGAGCCTGGGGTGGTAGCGGCAGAC
TTGCCAAATTAATTATAGCTGCGCTTTGTGGCAATGTGTTGGAGCTGTCA
TCATTGGCTGGCTGGTCTGGAGGTCCGTAGGTCTGATCGGGAGGTCCATA
AATTTGGTCCGGTGGGCCGTAGACCTCAGCTGGCGCTTCCACCAAAGACG
GTGGTCCGTATGTTTCAGGTGGAGGGCCATATGTATCCTCCGGTTGAGGA
AATTCAACCGCCTCCTCCGTTGGCAGGTCGAATGGCGGATCGGGGACCAG
GCCTGCTGGTGGATATGGGGCTTGTTCCTGTCTTTGCAGAAACCTTCCCG
CCGCGGGTCCTGGGAACCTCAGATGACTGCCTTCAATTCCATTCAGGCAA
AGAATGGAACAAAGCGCAAAGGTGACCAGAGAAGCACTTGGATAACCGGA
CATGTCGACTGATAACT
BS12069.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:27:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14570-PA | 687 | CG14570-RA | 1..687 | 703..17 | 3435 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:07:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14570-RA | 780 | CG14570-RA | 27..714 | 703..16 | 3440 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:07:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21729741..21730428 | 16..703 | 3440 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:07:34 has no hits.
BS12069.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:48 Download gff for
BS12069.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14570-PA | 1..687 | 17..703 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:00:32 Download gff for
BS12069.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14570-RA | 18..719 | 8..711 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:53:47 Download gff for
BS12069.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14570-RA | 18..719 | 8..711 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:53:47 Download gff for
BS12069.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21729733..21730426 | 8..701 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:00:32 Download gff for
BS12069.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21722833..21723526 | 8..701 | 99 | -> | Plus |
BS12069.5prime Sequence
717 bp (717 high quality bases) assembled on 2006-06-16
> BS12069.5prime
GAAGTTATCAGTCGACATGTCCGGTTATCCAAGTGCTTCTCTGGTCACCT
TTGCGCTTTGTTCCATTCTTTGCCTGAATGGAATTGAAGGCAGTCATCTG
AGGTTCCCAGGACCCGCGGCGGGAAGGTTTCTGCAAAGACAGGAACAAGC
CCCATATCCACCAGCAGGCCTGGTCCCCGATCCGCCATTCGACCTGCCAA
CGGAGGAGGCGGTTGAATTTCCTCAACCGGAGGATACATATGGCCCTCCA
CCTGAAACATACGGACCACCGTCTTTGGTGGAAGCGCCAGCTGAGGTCTA
CGGCCCACCGGACCAAATTTATGGACCTCCCGATCAGACCTACGGACCTC
CAGACCAGCCAGCCAATGATGACAGCTCCAACACATTGCCACAAAGCGCA
GCTATAATTAATTTGGCAAGTCTGCCGCTACCACCCCAGGCTCAGTATGT
TCTGCCGCTTCTGAACCGACTTTCTGCCTTCCGCCCGCAGCGTCCGGTTC
TGCGGACTCCGCAGCGACGGCCGGCTAAGCTTACGGTTCGTCGTCGGCCA
GATGCGGTCAAGATTGTGAATGCTATTAGGCCTACTCCAGTGTTCCCATC
GACTCCGCAGGCTTTGCCCTTCGTGGATCGCCACATTCCTTTTCGCCCAC
GGCCATCTCGCCTGATAGTCAATGCGCCTTTCAGACGCCCATCCAGGCAA
TAGAAGCTTTCTAGACC
BS12069.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:27:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14570-PA | 687 | CG14570-RA | 1..687 | 17..703 | 3435 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:20:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14570-RA | 780 | CG14570-RA | 27..714 | 17..704 | 3440 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:20:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21729741..21730428 | 704..17 | 3440 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:20:52 has no hits.
BS12069.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:49 Download gff for
BS12069.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14570-PA | 1..687 | 17..703 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:05:26 Download gff for
BS12069.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14570-RA | 18..719 | 9..712 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:40:50 Download gff for
BS12069.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14570-RA | 18..719 | 9..712 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:40:50 Download gff for
BS12069.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21729733..21730426 | 19..712 | 99 | -> | Minus |
3L | 21868224..21868241 | 1..18 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:05:26 Download gff for
BS12069.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21722833..21723526 | 19..712 | 99 | -> | Minus |
arm_3L | 21861324..21861341 | 1..18 | 94 | | Minus |
BS12069.complete Sequence
719 bp assembled on 2006-11-01
GenBank Submission: FJ637059
> BS12069.complete
GAAGTTATCAGTCGACATGTCCGGTTATCCAAGTGCTTCTCTGGTCACCT
TTGCGCTTTGTTCCATTCTTTGCCTGAATGGAATTGAAGGCAGTCATCTG
AGGTTCCCAGGACCCGCGGCGGGAAGGTTTCTGCAAAGACAGGAACAAGC
CCCATATCCACCAGCAGGCCTGGTCCCCGATCCGCCATTCGACCTGCCAA
CGGAGGAGGCGGTTGAATTTCCTCAACCGGAGGATACATATGGCCCTCCA
CCTGAAACATACGGACCACCGTCTTTGGTGGAAGCGCCAGCTGAGGTCTA
CGGCCCACCGGACCAAATTTATGGACCTCCCGATCAGACCTACGGACCTC
CAGACCAGCCAGCCAATGATGACAGCTCCAACACATTGCCACAAAGCGCA
GCTATAATTAATTTGGCAAGTCTGCCGCTACCACCCCAGGCTCAGTATGT
TCTGCCGCTTCTGAACCGACTTTCTGCCTTCCGCCCGCAGCGTCCGGTTC
TGCGGACTCCGCAGCGACGGCCGGCTAAGCTTACGGTTCGTCGTCGGCCA
GATGCGGTCAAGATTGTGAATGCTATTAGGCCTACTCCAGTGTTCCCATC
GACTCCGCAGGCTTTGCCCTTCGTGGATCGCCACATTCCTTTTCGCCCAC
GGCCATCTCGCCTGATAGTCAATGCGCCTTTCAGACGCCCATCCAGGCAA
TAGAAGCTTTCTAGACCAT
BS12069.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:24:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14570-RA | 687 | CG14570-PA | 1..687 | 17..703 | 3435 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:24:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14570-RA | 780 | CG14570-RA | 27..714 | 17..704 | 3440 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:24:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21729741..21730428 | 704..17 | 3440 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:24:57 has no hits.
BS12069.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:46:48 Download gff for
BS12069.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14570-RA | 1..687 | 17..703 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:40:34 Download gff for
BS12069.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14570-RA | 22..708 | 17..703 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:13:53 Download gff for
BS12069.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14570-RA | 27..713 | 17..703 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:46:49 Download gff for
BS12069.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14570-RA | 13..714 | 9..712 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:17:43 Download gff for
BS12069.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14570-RA | 27..713 | 17..703 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:17:43 Download gff for
BS12069.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21729742..21730428 | 17..703 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:13:53 Download gff for
BS12069.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21722842..21723528 | 17..703 | 100 | | Minus |
BS12069.pep Sequence
Translation from 16 to 702
> BS12069.pep
MSGYPSASLVTFALCSILCLNGIEGSHLRFPGPAAGRFLQRQEQAPYPPA
GLVPDPPFDLPTEEAVEFPQPEDTYGPPPETYGPPSLVEAPAEVYGPPDQ
IYGPPDQTYGPPDQPANDDSSNTLPQSAAIINLASLPLPPQAQYVLPLLN
RLSAFRPQRPVLRTPQRRPAKLTVRRRPDAVKIVNAIRPTPVFPSTPQAL
PFVDRHIPFRPRPSRLIVNAPFRRPSRQ*
BS12069.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14570-PA | 228 | CG14570-PA | 1..228 | 1..228 | 1221 | 100 | Plus |
CG14568-PA | 171 | CG14568-PA | 6..159 | 14..166 | 199 | 33.7 | Plus |
CG14569-PA | 195 | CG14569-PA | 4..111 | 5..127 | 183 | 36.1 | Plus |