Clone Sequence Records
BS12071.3prime Sequence
848 bp (797 high quality bases) assembled on 2006-06-16
> BS12071.3prime
ATGGTCTAGAAAGCTTTTATGTGAGGGCGGCGGCACCGGAGATGATTTCA
ATCAGCTCGCGAGTGATGACCGCCTGTCGGGTACGGTTGAAGGTGAGGGT
CAGCTTGTCGATCATCTCACCGGCGTTCTTGGAAGCGTTGTCCATGGCAG
TCATACGGGAGGACTGCTCCGAGCAGGCGCCCTCCTTCATGGTGTAGAAG
ATGAGCGAGGCCAGCGAGAACTCCAGATAGCTCTTGACCACGTCGCTGTC
GAGCGAGTCGTAGACGGCAAGCTTCTCCGACTTCTCCACGGTGGATCCGC
TGAAGATGGGGAGGGTGGAGCACTGGTAGGACACCACCGACTTGAAACGG
TTGTACACGATCTTGCCCTCGGTGTAATCGTAACCGGTCTGCAGAACCTC
GTTGGCAATCTTCGAGGCGTCCAGGAAAGTGGGGGGCAGTCGGCCCACCT
CGTTGGCCACCATCAGGATGTTCTTGCCGTACAGACGGGACAGAATCGCG
CGCGACTTGTCGCCCACGCAGAACACCTTAGTGTTGGCCTCGTCCTGGGC
CAGTTCGCCGCGAATGAGACGGGCCACACCAGTGTGGACGGCACCGCAAA
GACCACGGTCCGAAGTCACTGCGATGAGCAGCTTCTTGGGCTCCGCCTTC
TCGTCCGGCTGGATCTCCGTCTTCTCGAAGAACTGCTGGGCGCCGATGCC
GTAAGGACGAGCCGCCTTCAAGTCTCGCTCGGCACGAGCGTACTTGGCAG
CGGACACCATCTTCATCGATTGCGTATTTTTCTGAATGTTCTTCACCGAC
TTCAGGCGGATGGAAATCATCTTCAGGGTGGCCATGCCACGCTGCTGC
BS12071.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:27:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7610-PA | 894 | ATPsyn-gamma-RA | 63..894 | 848..17 | 4110 | 99.7 | Minus |
CG7610-PB | 894 | ATPsyn-gamma-RB | 63..894 | 848..17 | 4110 | 99.7 | Minus |
CG7610-PC | 894 | ATPsyn-gamma-RC | 63..894 | 848..17 | 4110 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:51:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ATPsyn-gamma-RC | 1166 | CG7610-RC | 185..1016 | 848..17 | 4130 | 99.8 | Minus |
ATPsyn-gamma-RB | 1395 | CG7610-RB | 425..1256 | 848..17 | 4130 | 99.8 | Minus |
ATPsyn-gamma-RA | 1080 | CG7610-RA | 110..941 | 848..17 | 4130 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:51:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29747854..29748685 | 17..848 | 4130 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:51:56 has no hits.
BS12071.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:50 Download gff for
BS12071.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7610-PC | 63..894 | 17..848 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:31:01 Download gff for
BS12071.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-gamma-RA | 110..943 | 13..848 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:59:28 Download gff for
BS12071.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-gamma-RA | 110..943 | 13..848 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:59:28 Download gff for
BS12071.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29747852..29748685 | 13..848 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:31:01 Download gff for
BS12071.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25573574..25574407 | 13..848 | 99 | | Plus |
BS12071.5prime Sequence
875 bp (738 high quality bases) assembled on 2006-06-16
> BS12071.5prime
GAAGTTATCAGTCGACATGATGATGCAACGCACCCAGCTCCTGCTGCCCC
TGGCCATGGAGGCCACCATGCTGGCCCAGCAGCAGCGTGGCATGGCCACC
CTGAAGATGATTTCCATCCGCCTGAAGTCGGTGAAGAACATTCAGAAAAT
TACGCAATCGATGAAGATGGTGTCCGCTGCCAAGTACGCTCGTGCCGAGC
GAGACTTGAAGGCGGCTCGTCCTTACGGCATCGGCGCCCAGCAGTTCTTC
GAGAAGACGGAGATCCAGCCGGACGAGAAGGCGGAGCCCAAGAAGCTGCT
CATCGCAGTGACTTCGGACCGTGGTCTTTGCGGTGCCGTCCACACTGGTG
TGGCCCGTCTCATTCGCGGCGAACTGGCCCAGGACGAGGCCAACACTAAG
GTGTTCTGCGTGGGCGACAAGTCGCGCGCGATTCTGTCCCGTCTGTACGG
CAAGAACATCCTGATGGTGGCCAACGAGGTGGGCCGACTGCCCCCCACTT
TCCTGGACGCCTCGAAGATTGCCAACGAGGTTCTGCAGACCGGTTACGAT
TACACCGAGGGCAAGATCGTGTACAACCGTTTCAAGTCGGTGGTGTCCTA
CCAGTGCTCCACCCTCCCCATCTTCAGCGGATCCACCGTGGAGAAGTCGG
AGAAGCTTGCCGTCTACGACTCGCTCGACAGCGACGTGGTCAAGAGCTAT
CTGGAGTTCTCGCTGGCCTCGCTCATCTTCTACACCATGAAGGAGGGCGC
CTGCTCGGAGCAGTCCTCCCGTATGACTGCCATGGACAACGCTTCCAAGA
ACGCCGGTGAGATGATCGACAAGCTGACCCTCACCTTCAACCGTACCCGA
CAGGCGGTCATCACTCGCGAGCTGA
BS12071.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:27:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7610-PA | 894 | ATPsyn-gamma-RA | 1..859 | 17..875 | 4270 | 99.8 | Plus |
CG7610-PB | 894 | ATPsyn-gamma-RB | 1..859 | 17..875 | 4270 | 99.8 | Plus |
CG7610-PC | 894 | ATPsyn-gamma-RC | 1..859 | 17..875 | 4270 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:52:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ATPsyn-gamma-RC | 1166 | CG7610-RC | 123..981 | 17..875 | 4280 | 99.9 | Plus |
ATPsyn-gamma-RB | 1395 | CG7610-RB | 363..1221 | 17..875 | 4280 | 99.9 | Plus |
ATPsyn-gamma-RA | 1080 | CG7610-RA | 48..906 | 17..875 | 4280 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:52:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29747889..29748747 | 875..17 | 4280 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:52:02 has no hits.
BS12071.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:51 Download gff for
BS12071.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7610-PC | 1..858 | 17..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:31:03 Download gff for
BS12071.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-gamma-RA | 45..905 | 10..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:59:41 Download gff for
BS12071.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-gamma-RA | 45..905 | 10..874 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:59:41 Download gff for
BS12071.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29747890..29748745 | 19..874 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:31:03 Download gff for
BS12071.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25573612..25574467 | 19..874 | 99 | -> | Minus |
BS12071.complete Sequence
926 bp assembled on 2006-11-01
GenBank Submission: FJ637060
> BS12071.complete
GAAGTTATCAGTCGACATGATGATGCAACGCACCCAGCTCCTGCTGCCCC
TGGCCATGGAGGCCACCATGCTGGCCCAGCAGCAGCGTGGCATGGCCACC
CTGAAGATGATTTCCATCCGCCTGAAGTCGGTGAAGAACATTCAGAAAAT
TACGCAATCGATGAAGATGGTGTCCGCTGCCAAGTACGCTCGTGCCGAGC
GAGACTTGAAGGCGGCTCGTCCTTACGGCATCGGCGCCCAGCAGTTCTTC
GAGAAGACGGAGATCCAGCCGGACGAGAAGGCGGAGCCCAAGAAGCTGCT
CATCGCAGTGACTTCGGACCGTGGTCTTTGCGGTGCCGTCCACACTGGTG
TGGCCCGTCTCATTCGCGGCGAACTGGCCCAGGACGAGGCCAACACTAAG
GTGTTCTGCGTGGGCGACAAGTCGCGCGCGATTCTGTCCCGTCTGTACGG
CAAGAACATCCTGATGGTGGCCAACGAGGTGGGCCGACTGCCCCCCACTT
TCCTGGACGCCTCGAAGATTGCCAACGAGGTTCTGCAGACCGGTTACGAT
TACACCGAGGGCAAGATCGTGTACAACCGTTTCAAGTCGGTGGTGTCCTA
CCAGTGCTCCACCCTCCCCATCTTCAGCGGATCCACCGTGGAGAAGTCGG
AGAAGCTTGCCGTCTACGACTCGCTCGACAGCGACGTGGTCAAGAGCTAT
CTGGAGTTCTCGCTGGCCTCGCTCATCTTCTACACCATGAAGGAGGGCGC
CTGCTCGGAGCAGTCCTCCCGTATGACTGCCATGGACAACGCTTCCAAGA
ACGCCGGTGAGATGATCGACAAGCTGACCCTCACCTTCAACCGTACCCGA
CAGGCGGTCATCACTCGCGAGCTGATTGAAATCATCTCCGGTGCCGCCGC
CCTCACATAAAAGCTTTCTAGACCAT
BS12071.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:49:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ATPsyn-gamma-RC | 894 | CG7610-PC | 1..894 | 17..910 | 4455 | 99.9 | Plus |
ATPsyn-gamma-RB | 894 | CG7610-PB | 1..894 | 17..910 | 4455 | 99.9 | Plus |
ATPsyn-gamma-RA | 894 | CG7610-PA | 1..894 | 17..910 | 4455 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:49:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ATPsyn-gamma-RC | 1166 | CG7610-RC | 123..1016 | 17..910 | 4455 | 99.9 | Plus |
ATPsyn-gamma-RB | 1395 | CG7610-RB | 363..1256 | 17..910 | 4455 | 99.9 | Plus |
ATPsyn-gamma-RA | 1080 | CG7610-RA | 48..941 | 17..910 | 4455 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:49:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29747854..29748747 | 910..17 | 4455 | 99.9 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:49:37 has no hits.
BS12071.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:46:50 Download gff for
BS12071.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-gamma-RC | 1..894 | 17..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:21:57 Download gff for
BS12071.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-gamma-RC | 92..991 | 9..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:43:29 Download gff for
BS12071.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-gamma-RA | 48..939 | 17..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:46:50 Download gff for
BS12071.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-gamma-RC | 92..991 | 9..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:00:58 Download gff for
BS12071.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-gamma-RA | 48..939 | 17..908 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:00:58 Download gff for
BS12071.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29747856..29748747 | 17..908 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:43:29 Download gff for
BS12071.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25573578..25574469 | 17..908 | 99 | | Minus |
BS12071.pep Sequence
Translation from 16 to 909
> BS12071.pep
MMMQRTQLLLPLAMEATMLAQQQRGMATLKMISIRLKSVKNIQKITQSMK
MVSAAKYARAERDLKAARPYGIGAQQFFEKTEIQPDEKAEPKKLLIAVTS
DRGLCGAVHTGVARLIRGELAQDEANTKVFCVGDKSRAILSRLYGKNILM
VANEVGRLPPTFLDASKIANEVLQTGYDYTEGKIVYNRFKSVVSYQCSTL
PIFSGSTVEKSEKLAVYDSLDSDVVKSYLEFSLASLIFYTMKEGACSEQS
SRMTAMDNASKNAGEMIDKLTLTFNRTRQAVITRELIEIISGAAALT*
BS12071.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ATPsyn-gamma-PC | 297 | CG7610-PC | 1..297 | 1..297 | 1463 | 100 | Plus |
ATPsyn-gamma-PB | 297 | CG7610-PB | 1..297 | 1..297 | 1463 | 100 | Plus |
ATPsyn-gamma-PA | 297 | CG7610-PA | 1..297 | 1..297 | 1463 | 100 | Plus |