Clone BS12071 Report

Search the DGRC for BS12071

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:120
Well:71
Vector:pDNR-Dual
Associated Gene/TranscriptATPsyn-gamma-RA
Protein status:BS12071.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12071.3prime Sequence

848 bp (797 high quality bases) assembled on 2006-06-16

> BS12071.3prime
ATGGTCTAGAAAGCTTTTATGTGAGGGCGGCGGCACCGGAGATGATTTCA
ATCAGCTCGCGAGTGATGACCGCCTGTCGGGTACGGTTGAAGGTGAGGGT
CAGCTTGTCGATCATCTCACCGGCGTTCTTGGAAGCGTTGTCCATGGCAG
TCATACGGGAGGACTGCTCCGAGCAGGCGCCCTCCTTCATGGTGTAGAAG
ATGAGCGAGGCCAGCGAGAACTCCAGATAGCTCTTGACCACGTCGCTGTC
GAGCGAGTCGTAGACGGCAAGCTTCTCCGACTTCTCCACGGTGGATCCGC
TGAAGATGGGGAGGGTGGAGCACTGGTAGGACACCACCGACTTGAAACGG
TTGTACACGATCTTGCCCTCGGTGTAATCGTAACCGGTCTGCAGAACCTC
GTTGGCAATCTTCGAGGCGTCCAGGAAAGTGGGGGGCAGTCGGCCCACCT
CGTTGGCCACCATCAGGATGTTCTTGCCGTACAGACGGGACAGAATCGCG
CGCGACTTGTCGCCCACGCAGAACACCTTAGTGTTGGCCTCGTCCTGGGC
CAGTTCGCCGCGAATGAGACGGGCCACACCAGTGTGGACGGCACCGCAAA
GACCACGGTCCGAAGTCACTGCGATGAGCAGCTTCTTGGGCTCCGCCTTC
TCGTCCGGCTGGATCTCCGTCTTCTCGAAGAACTGCTGGGCGCCGATGCC
GTAAGGACGAGCCGCCTTCAAGTCTCGCTCGGCACGAGCGTACTTGGCAG
CGGACACCATCTTCATCGATTGCGTATTTTTCTGAATGTTCTTCACCGAC
TTCAGGCGGATGGAAATCATCTTCAGGGTGGCCATGCCACGCTGCTGC

BS12071.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:27:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG7610-PA 894 ATPsyn-gamma-RA 63..894 848..17 4110 99.7 Minus
CG7610-PB 894 ATPsyn-gamma-RB 63..894 848..17 4110 99.7 Minus
CG7610-PC 894 ATPsyn-gamma-RC 63..894 848..17 4110 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:51:57
Subject Length Description Subject Range Query Range Score Percent Strand
ATPsyn-gamma-RC 1166 CG7610-RC 185..1016 848..17 4130 99.8 Minus
ATPsyn-gamma-RB 1395 CG7610-RB 425..1256 848..17 4130 99.8 Minus
ATPsyn-gamma-RA 1080 CG7610-RA 110..941 848..17 4130 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:51:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29747854..29748685 17..848 4130 99.8 Plus
Blast to na_te.dros performed on 2015-02-12 03:51:56 has no hits.

BS12071.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:50 Download gff for BS12071.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7610-PC 63..894 17..848 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:31:01 Download gff for BS12071.3prime
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-gamma-RA 110..943 13..848 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:59:28 Download gff for BS12071.3prime
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-gamma-RA 110..943 13..848 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:59:28 Download gff for BS12071.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 29747852..29748685 13..848 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:31:01 Download gff for BS12071.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25573574..25574407 13..848 99   Plus

BS12071.5prime Sequence

875 bp (738 high quality bases) assembled on 2006-06-16

> BS12071.5prime
GAAGTTATCAGTCGACATGATGATGCAACGCACCCAGCTCCTGCTGCCCC
TGGCCATGGAGGCCACCATGCTGGCCCAGCAGCAGCGTGGCATGGCCACC
CTGAAGATGATTTCCATCCGCCTGAAGTCGGTGAAGAACATTCAGAAAAT
TACGCAATCGATGAAGATGGTGTCCGCTGCCAAGTACGCTCGTGCCGAGC
GAGACTTGAAGGCGGCTCGTCCTTACGGCATCGGCGCCCAGCAGTTCTTC
GAGAAGACGGAGATCCAGCCGGACGAGAAGGCGGAGCCCAAGAAGCTGCT
CATCGCAGTGACTTCGGACCGTGGTCTTTGCGGTGCCGTCCACACTGGTG
TGGCCCGTCTCATTCGCGGCGAACTGGCCCAGGACGAGGCCAACACTAAG
GTGTTCTGCGTGGGCGACAAGTCGCGCGCGATTCTGTCCCGTCTGTACGG
CAAGAACATCCTGATGGTGGCCAACGAGGTGGGCCGACTGCCCCCCACTT
TCCTGGACGCCTCGAAGATTGCCAACGAGGTTCTGCAGACCGGTTACGAT
TACACCGAGGGCAAGATCGTGTACAACCGTTTCAAGTCGGTGGTGTCCTA
CCAGTGCTCCACCCTCCCCATCTTCAGCGGATCCACCGTGGAGAAGTCGG
AGAAGCTTGCCGTCTACGACTCGCTCGACAGCGACGTGGTCAAGAGCTAT
CTGGAGTTCTCGCTGGCCTCGCTCATCTTCTACACCATGAAGGAGGGCGC
CTGCTCGGAGCAGTCCTCCCGTATGACTGCCATGGACAACGCTTCCAAGA
ACGCCGGTGAGATGATCGACAAGCTGACCCTCACCTTCAACCGTACCCGA
CAGGCGGTCATCACTCGCGAGCTGA

BS12071.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:27:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG7610-PA 894 ATPsyn-gamma-RA 1..859 17..875 4270 99.8 Plus
CG7610-PB 894 ATPsyn-gamma-RB 1..859 17..875 4270 99.8 Plus
CG7610-PC 894 ATPsyn-gamma-RC 1..859 17..875 4270 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:52:03
Subject Length Description Subject Range Query Range Score Percent Strand
ATPsyn-gamma-RC 1166 CG7610-RC 123..981 17..875 4280 99.9 Plus
ATPsyn-gamma-RB 1395 CG7610-RB 363..1221 17..875 4280 99.9 Plus
ATPsyn-gamma-RA 1080 CG7610-RA 48..906 17..875 4280 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:52:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29747889..29748747 875..17 4280 99.9 Minus
Blast to na_te.dros performed on 2015-02-12 03:52:02 has no hits.

BS12071.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:51 Download gff for BS12071.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7610-PC 1..858 17..874 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:31:03 Download gff for BS12071.5prime
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-gamma-RA 45..905 10..874 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:59:41 Download gff for BS12071.5prime
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-gamma-RA 45..905 10..874 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:59:41 Download gff for BS12071.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 29747890..29748745 19..874 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:31:03 Download gff for BS12071.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25573612..25574467 19..874 99 -> Minus

BS12071.complete Sequence

926 bp assembled on 2006-11-01

GenBank Submission: FJ637060

> BS12071.complete
GAAGTTATCAGTCGACATGATGATGCAACGCACCCAGCTCCTGCTGCCCC
TGGCCATGGAGGCCACCATGCTGGCCCAGCAGCAGCGTGGCATGGCCACC
CTGAAGATGATTTCCATCCGCCTGAAGTCGGTGAAGAACATTCAGAAAAT
TACGCAATCGATGAAGATGGTGTCCGCTGCCAAGTACGCTCGTGCCGAGC
GAGACTTGAAGGCGGCTCGTCCTTACGGCATCGGCGCCCAGCAGTTCTTC
GAGAAGACGGAGATCCAGCCGGACGAGAAGGCGGAGCCCAAGAAGCTGCT
CATCGCAGTGACTTCGGACCGTGGTCTTTGCGGTGCCGTCCACACTGGTG
TGGCCCGTCTCATTCGCGGCGAACTGGCCCAGGACGAGGCCAACACTAAG
GTGTTCTGCGTGGGCGACAAGTCGCGCGCGATTCTGTCCCGTCTGTACGG
CAAGAACATCCTGATGGTGGCCAACGAGGTGGGCCGACTGCCCCCCACTT
TCCTGGACGCCTCGAAGATTGCCAACGAGGTTCTGCAGACCGGTTACGAT
TACACCGAGGGCAAGATCGTGTACAACCGTTTCAAGTCGGTGGTGTCCTA
CCAGTGCTCCACCCTCCCCATCTTCAGCGGATCCACCGTGGAGAAGTCGG
AGAAGCTTGCCGTCTACGACTCGCTCGACAGCGACGTGGTCAAGAGCTAT
CTGGAGTTCTCGCTGGCCTCGCTCATCTTCTACACCATGAAGGAGGGCGC
CTGCTCGGAGCAGTCCTCCCGTATGACTGCCATGGACAACGCTTCCAAGA
ACGCCGGTGAGATGATCGACAAGCTGACCCTCACCTTCAACCGTACCCGA
CAGGCGGTCATCACTCGCGAGCTGATTGAAATCATCTCCGGTGCCGCCGC
CCTCACATAAAAGCTTTCTAGACCAT

BS12071.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:49:39
Subject Length Description Subject Range Query Range Score Percent Strand
ATPsyn-gamma-RC 894 CG7610-PC 1..894 17..910 4455 99.9 Plus
ATPsyn-gamma-RB 894 CG7610-PB 1..894 17..910 4455 99.9 Plus
ATPsyn-gamma-RA 894 CG7610-PA 1..894 17..910 4455 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:49:40
Subject Length Description Subject Range Query Range Score Percent Strand
ATPsyn-gamma-RC 1166 CG7610-RC 123..1016 17..910 4455 99.9 Plus
ATPsyn-gamma-RB 1395 CG7610-RB 363..1256 17..910 4455 99.9 Plus
ATPsyn-gamma-RA 1080 CG7610-RA 48..941 17..910 4455 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:49:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29747854..29748747 910..17 4455 99.9 Minus
Blast to na_te.dros performed on 2014-11-26 14:49:37 has no hits.

BS12071.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:46:50 Download gff for BS12071.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-gamma-RC 1..894 17..910 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:21:57 Download gff for BS12071.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-gamma-RC 92..991 9..914 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:43:29 Download gff for BS12071.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-gamma-RA 48..939 17..908 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:46:50 Download gff for BS12071.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-gamma-RC 92..991 9..914 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:00:58 Download gff for BS12071.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-gamma-RA 48..939 17..908 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:00:58 Download gff for BS12071.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29747856..29748747 17..908 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:43:29 Download gff for BS12071.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25573578..25574469 17..908 99   Minus

BS12071.pep Sequence

Translation from 16 to 909

> BS12071.pep
MMMQRTQLLLPLAMEATMLAQQQRGMATLKMISIRLKSVKNIQKITQSMK
MVSAAKYARAERDLKAARPYGIGAQQFFEKTEIQPDEKAEPKKLLIAVTS
DRGLCGAVHTGVARLIRGELAQDEANTKVFCVGDKSRAILSRLYGKNILM
VANEVGRLPPTFLDASKIANEVLQTGYDYTEGKIVYNRFKSVVSYQCSTL
PIFSGSTVEKSEKLAVYDSLDSDVVKSYLEFSLASLIFYTMKEGACSEQS
SRMTAMDNASKNAGEMIDKLTLTFNRTRQAVITRELIEIISGAAALT*

BS12071.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:42
Subject Length Description Subject Range Query Range Score Percent Strand
ATPsyn-gamma-PC 297 CG7610-PC 1..297 1..297 1463 100 Plus
ATPsyn-gamma-PB 297 CG7610-PB 1..297 1..297 1463 100 Plus
ATPsyn-gamma-PA 297 CG7610-PA 1..297 1..297 1463 100 Plus