BS12076.complete Sequence
1883 bp assembled on 2009-12-07
GenBank Submission: KX800969
> BS12076.complete
GAAGTTATCAGTCGACATGGAGAAGCTGCTGCTGACCCAGCTTCTGTTTC
TGCTCCTGATCCCACTGATCCACTCCCAAAGGAGCTCCCAACTGGACGAA
CTGCGGCGACTGGGATTGGGAAATGTCGTCAATGTGCCATTCTTCAGCGA
TGTTCCCCAAAGAAACTATGACTTCATAATAGTTGGAGGCGGAGCTGCTG
GCTGTACATTGGCCGCTCGTCTCTCGGAGAATCCCAATTGGAGTGTGTTC
CTTATCGAAGCCGGAGGAGTGGAGAACATAGTGCATCAGGTGCCATTACT
GGCGGCCCATTTGCAGTCGACTGCCTCCAATTGGGGCTACAACTCGACGC
CACAACGCCATGCCTGTCGTGGAATGCCCGATAACAAGTGTGCCCTGCCG
AGGGGCAAAGTTCTGGGTGGCACTAGCTCGATCAATTACATGATCTACAA
TCGGGGCAATCGTAGGGATTTTGATGCCTGGGCGGCAGCTGGAAATCCCG
GCTGGAGTTACGACGAGGTGTTGCCCTACTTTCTGCGAAGTGAGCATGCA
CAGCTTCAGGGATTGGAGCACTCGCCATATCACAATCACAGTGGTCCCTT
GAGTGTGGAGGATGTGCGACACCGGACGCGACTTGCACACGCCTACATTA
GAGCTGCCCAGGAGGCGGGTCATCCGAGAACGGACTACAATGGTGAATCC
CAGCTGGGCGTTTCCTATGTGCAGGCCACCACACTGAAGGGCAGGAGGCA
CAGTGCCTTTCGTGCCTATATTGAGCCCATAAGATCTAGGCGTCATAATC
TGCACATTCTAACACTGGCTAGAGTCACCCGAGTTCTGATAGATGCAGCC
ACCAAGTCCGCCTATGGAGTGGAGTTGACCCATCAGGGCAGAAGCTTTAA
GGTGAAAGCCCGCAAGGAAATCATTCTATCGGCGGGTGCCTTCAACTCTC
CACAGTTGCTGATGCTGTCGGGGATTGGGCCAGAAGATAACCTCAAGGCC
ATTGGAATACCCCTGATCAAGGCACTGCCAGTGGGTAAGAGAATGTTCGA
TCACATGTGCCACTTTGGACCCACTTTTGTGACCAACACAACGGGCCAGA
CTCTATTTGCCGCTCAATTGGGCGCACCGGTGGCCAAGGAGTTTCTACTG
GGCCGGGCAGACACCTTTCTGTCCAGTATCGGTGGCGTAGAGACGCTCAC
CTTCATCAAGGTGCCGTCGGGCAAGAGTCCGGCCACCCAACCCGATGTGG
AACTCATCCAAGTGGCCGGCAGCCTGGCTAGCGATGATGGCACTGCCCTG
GCCAAAGGAGCCAACTTTAAGCCCGAGATCTACGAGAAAATGTACAAGAA
TCTGACGTTGAGGCAGCAGGATCACTTTAGCTTCCTCATCATGCACTTCA
AGCCCGCCTCCGTGGGTCGCCTCTGGCTGCACAATCGCAATCCACTCGAG
TGGCCACGCATCGATCCCAAGTACTTTTCGGCTCCGTCGGATGTGGAGAA
CTTGCTGGAGGGCATTAAGGAGGCACTCAGAATCTCCAAGATGCCGGCCA
TGCAGGCGATTGGAACCAGATTGTTGGACAAGCCGGTGCCAGGTTGTGAG
AACTACGAATTCGCCTCGGATGATTATTGGCGGTGCTCCATACGCACGCT
ATCCTACACACTGCACCACCAGGTGGCCACCTGTCGCATGGGCGCCGAAA
GTGATCCCACCACCGTGGTCAATCATCAGCTAAAGGTGCATGGAGTGAGG
AAACTTCGGGTGGTGGACACCAGTATCATACCGTTTCCACCCACCGCTCA
CACAAATGCAGCGGCATTTATGATTGGGGAAAAGGCGGCTGATATGATAC
GATCCGAATGGAGTTGAAAGCTTTCTAGACCAT
BS12076.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:57:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9522-RA | 1851 | CG9522-PA | 1..1851 | 17..1867 | 9255 | 100 | Plus |
| CG12539-RA | 1881 | CG12539-PA | 1274..1869 | 1266..1861 | 1225 | 80.4 | Plus |
| CG12539-RA | 1881 | CG12539-PA | 169..614 | 164..609 | 1180 | 84.3 | Plus |
| CG12539-RA | 1881 | CG12539-PA | 928..1103 | 923..1098 | 640 | 90.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:57:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9522-RA | 2191 | CG9522-RA | 30..1881 | 16..1867 | 9260 | 100 | Plus |
| CG12539-RA | 2085 | CG12539-RA | 1299..1894 | 1266..1861 | 1225 | 80.4 | Plus |
| CG12539-RA | 2085 | CG12539-RA | 194..639 | 164..609 | 1180 | 84.3 | Plus |
| CG12539-RA | 2085 | CG12539-RA | 953..1128 | 923..1098 | 640 | 90.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:56:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14846782..14848497 | 1867..152 | 8580 | 100 | Minus |
| X | 23542271 | X | 14842808..14843403 | 1861..1266 | 1225 | 80.4 | Minus |
| X | 23542271 | X | 14844063..14844508 | 609..164 | 1180 | 84.3 | Minus |
| X | 23542271 | X | 14848643..14848779 | 152..16 | 685 | 100 | Minus |
| X | 23542271 | X | 14843574..14843749 | 1098..923 | 640 | 90.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:57:00 has no hits.
BS12076.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:43:29 Download gff for
BS12076.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9522-RA | 23..1872 | 17..1866 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:02:02 Download gff for
BS12076.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9522-RA | 31..1880 | 17..1866 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:09:57 Download gff for
BS12076.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9522-RA | 27..1876 | 17..1866 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:00:28 Download gff for
BS12076.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9522-RA | 31..1880 | 17..1866 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:00:28 Download gff for
BS12076.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14846783..14848496 | 153..1866 | 100 | <- | Minus |
| X | 14848643..14848778 | 17..152 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:02:02 Download gff for
BS12076.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14740816..14742529 | 153..1866 | 100 | <- | Minus |
| arm_X | 14742676..14742811 | 17..152 | 100 | | Minus |
BS12076.pep Sequence
Translation from 16 to 1866
> BS12076.pep
MEKLLLTQLLFLLLIPLIHSQRSSQLDELRRLGLGNVVNVPFFSDVPQRN
YDFIIVGGGAAGCTLAARLSENPNWSVFLIEAGGVENIVHQVPLLAAHLQ
STASNWGYNSTPQRHACRGMPDNKCALPRGKVLGGTSSINYMIYNRGNRR
DFDAWAAAGNPGWSYDEVLPYFLRSEHAQLQGLEHSPYHNHSGPLSVEDV
RHRTRLAHAYIRAAQEAGHPRTDYNGESQLGVSYVQATTLKGRRHSAFRA
YIEPIRSRRHNLHILTLARVTRVLIDAATKSAYGVELTHQGRSFKVKARK
EIILSAGAFNSPQLLMLSGIGPEDNLKAIGIPLIKALPVGKRMFDHMCHF
GPTFVTNTTGQTLFAAQLGAPVAKEFLLGRADTFLSSIGGVETLTFIKVP
SGKSPATQPDVELIQVAGSLASDDGTALAKGANFKPEIYEKMYKNLTLRQ
QDHFSFLIMHFKPASVGRLWLHNRNPLEWPRIDPKYFSAPSDVENLLEGI
KEALRISKMPAMQAIGTRLLDKPVPGCENYEFASDDYWRCSIRTLSYTLH
HQVATCRMGAESDPTTVVNHQLKVHGVRKLRVVDTSIIPFPPTAHTNAAA
FMIGEKAADMIRSEWS*
BS12076.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:09:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9522-PA | 616 | CG9522-PA | 1..616 | 1..616 | 3228 | 100 | Plus |
| CG12539-PA | 626 | CG12539-PA | 9..623 | 10..615 | 2282 | 71.4 | Plus |
| CG6142-PA | 616 | CG6142-PA | 48..607 | 51..615 | 1262 | 44.6 | Plus |
| CG9519-PA | 622 | CG9519-PA | 39..618 | 18..614 | 1226 | 43.3 | Plus |
| CG9521-PA | 621 | CG9521-PA | 60..616 | 51..614 | 1181 | 42.2 | Plus |
