BS12077.complete Sequence
1289 bp assembled on 2006-11-01
GenBank Submission: FJ637061
> BS12077.complete
GAAGTTATCAGTCGACATGTCTCGCAACCATCAGCGACCAAATCTTGGTC
TGGTCGATGCACCGCCTAATGATCATGTCGAAGAATATGTAGTGGAGAAA
ATCTTAGGCAAACGGTTTGTTAATGGGCGTCCCCAGGTTCTGGTGAAGTG
GAGCGGTTTTCCGAACGAGAACAACACCTGGGAACCATTGGAAAACGTAG
GCAACTGCATGAAGCTGGTCTCCGACTTCGAGTCGGAGGTCTTCAGGCTG
CATCGGAAGGCCGCGGCTAAATCTGTCGGGAAATCGAAGTCAAGTCCTAG
CAGCAGCGGTCCATTGATCACCGAGAATGGCCCCAGCAGCTCTAAGAAAA
CACAACAACATTCCAAGTCGGTGCAGGCAAAAAACACAGCTGGAATGTCG
AAGATGAATCAGAAAAAAGGAAAGAATATTAAGAAAACGGCGGGAAAAAT
CAAAGATATTGAAAATTATCCCAAAACTCAGATGCCTAGTACTAGCCAAG
TCTCCACAGATTCAACTGAAGTTTTCGACGGCAATCCATCAGCCACAACG
ACGAACATGATTAAGAGTCCCAGGATTCAAAGCCTTTTCAGTGATCTGAA
CTTGATCGAACCCACTAAAGACAAAGATGTGGGGGACACATCTTTAAAAA
CGCCTCCCAAATCGCGCCGGCTTATTGAATTTCCTCAACGGGAAGACGCA
CCATTGTCTTCGAAACATGTGTCTCCTATGCTGATTCGTAAAGAATCCCA
ACCATTGCAGAGCTCATGTACTGATGATTCGGATTTGGGTGAATCCTCTT
CCAGTATGTCGCTTCCTACAGTATCATCGACCAGCTCTGAGAAATCGATC
AAGGTCACCAAATCGGAACCTAAAACGCTCGGCCAGATAAAGTTTTCGTC
TAGGTCATCCGATGGTGGTCATGCGGCTTCATCGCTGGGCGCACCAAAAG
AAGGGGACATTGGCTTGGATTTATCTGGCAGTGATTCCATGGATTCCGAA
GTGGAGAGCATGCGCCGCTGTCCGCGCCGCAAGCGTAAAAAAACTTACCC
GGATTGGAAATTCCCGGAGATGACGAAACCCTTCGGTGTGAATCGCGGAC
TGGATCTGGATAAAATTCTCCACTGCTACCAGATGAATGACGATCTATTC
ATGTTTGTCACGTGGAAGGGCTGCTCGTCCATCGATGCAGTGCATATTAA
TGACATTAAGGAAGCGTATCCATTGCAGATAATTAAGTACTTCGAGAGCT
TGAGGATCATTGTGCCCAAGTAAAAGCTTTCTAGACCAT
BS12077.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:41:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rhi-RA | 1257 | CG10683-PA | 1..1257 | 17..1273 | 6285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:41:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rhi-RA | 1570 | CG10683-RA | 41..1298 | 17..1274 | 6290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:41:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17632484..17633476 | 1009..17 | 4965 | 100 | Minus |
| 2R | 25286936 | 2R | 17631969..17632233 | 1274..1010 | 1325 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:41:12 has no hits.
BS12077.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:46:51 Download gff for
BS12077.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rhi-RA | 1..1257 | 17..1273 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:21:58 Download gff for
BS12077.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rhi-RA | 34..1304 | 10..1284 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:53:07 Download gff for
BS12077.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rhi-RA | 41..1295 | 17..1271 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:46:51 Download gff for
BS12077.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rhi-RA | 34..1304 | 10..1284 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:24:16 Download gff for
BS12077.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rhi-RA | 41..1295 | 17..1271 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:24:16 Download gff for
BS12077.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17631972..17632233 | 1010..1271 | 100 | <- | Minus |
| 2R | 17632484..17633476 | 17..1009 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:53:07 Download gff for
BS12077.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13519477..13519738 | 1010..1271 | 100 | <- | Minus |
| arm_2R | 13519989..13520981 | 17..1009 | 100 | | Minus |
BS12077.pep Sequence
Translation from 16 to 1272
> BS12077.pep
MSRNHQRPNLGLVDAPPNDHVEEYVVEKILGKRFVNGRPQVLVKWSGFPN
ENNTWEPLENVGNCMKLVSDFESEVFRLHRKAAAKSVGKSKSSPSSSGPL
ITENGPSSSKKTQQHSKSVQAKNTAGMSKMNQKKGKNIKKTAGKIKDIEN
YPKTQMPSTSQVSTDSTEVFDGNPSATTTNMIKSPRIQSLFSDLNLIEPT
KDKDVGDTSLKTPPKSRRLIEFPQREDAPLSSKHVSPMLIRKESQPLQSS
CTDDSDLGESSSSMSLPTVSSTSSEKSIKVTKSEPKTLGQIKFSSRSSDG
GHAASSLGAPKEGDIGLDLSGSDSMDSEVESMRRCPRRKRKKTYPDWKFP
EMTKPFGVNRGLDLDKILHCYQMNDDLFMFVTWKGCSSIDAVHINDIKEA
YPLQIIKYFESLRIIVPK*
BS12077.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rhi-PA | 418 | CG10683-PA | 1..418 | 1..418 | 2166 | 100 | Plus |
| Oxp-PA | 84 | CG18186-PA | 7..79 | 9..81 | 215 | 52.1 | Plus |
| Su(var)205-PB | 206 | CG8409-PB | 1..121 | 1..126 | 163 | 33.1 | Plus |
| Su(var)205-PA | 206 | CG8409-PA | 1..121 | 1..126 | 163 | 33.1 | Plus |
| HP1b-PB | 240 | CG7041-PB | 3..106 | 23..126 | 151 | 33 | Plus |
