Clone BS12078 Report

Search the DGRC for BS12078

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:120
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptNpc2b-RA
Protein status:BS12078.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12078.3prime Sequence

510 bp (510 high quality bases) assembled on 2006-06-16

> BS12078.3prime
ATGGTCTAGAAAGCTTTTAAGCCTTGATTTTGGCGGGTATCTGGAAGCAG
GCCGCATCCCCATGCTTATCGCCCAATCCCCAGTGGATCTCCAAACTGAC
GGTCGGGTAGACGGGCAGGATCTTGAAGCTGTTCTTGTAGGTGTACACCT
GGCCGGCCTTCAGTGGGCAGCCCACCTTCTTCTCGCCAGCCTCGTCGTAG
ATGTGCGGACAGGCGCTGGTGCCGTAATATCCTGGGAACGGCAGCGGCAC
GTCCAGGATAATGCCCTGGATGTCGGAGGTCAGCTCCTGGAAGTCGCGCT
CCGGCCGGATCTTCATCTGAATGCTGGCCTCCGTGTTGCGCTTCAGGATG
CACTTGCTCTTGGGGCAATTGGAAATGGAGACGTCACCGGCAGCTAGGGC
CTTCGATTTGGATTTCGGGCACTGACTCACATCCGTGGACGACGTGAAGC
CGATCAAAGCGGCGAAGATCACAAATAATCCTAAGCTCAGCTTCATGTCG
ACTGATAACT

BS12078.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:27:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG3153-PB 480 CG3153-RB 1..480 496..17 2400 100 Minus
CG3153-PA 480 CG3153-RA 1..480 496..17 2400 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:07:44
Subject Length Description Subject Range Query Range Score Percent Strand
Npc2b-RA 839 CG3153-RA 138..619 496..15 2410 100 Minus
Npc2b-RB 804 CG3153-RB 103..584 496..15 2410 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:07:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14091809..14092205 411..15 1985 100 Minus
3R 32079331 3R 14091317..14091401 496..412 425 100 Minus
Blast to na_te.dros performed on 2015-02-11 09:07:43 has no hits.

BS12078.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:52 Download gff for BS12078.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3153-PA 1..480 17..496 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:00:39 Download gff for BS12078.3prime
Subject Subject Range Query Range Percent Splice Strand
Npc2b-RB 94..584 15..506 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:54:11 Download gff for BS12078.3prime
Subject Subject Range Query Range Percent Splice Strand
Npc2b-RB 94..584 15..506 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:54:11 Download gff for BS12078.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 14091308..14091401 412..506 96 -> Minus
3R 14091809..14092205 15..411 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:00:39 Download gff for BS12078.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9917030..9917123 412..506 96 -> Minus
arm_3R 9917531..9917927 15..411 100   Minus

BS12078.5prime Sequence

510 bp (510 high quality bases) assembled on 2006-06-16

> BS12078.5prime
GAAGTTATCACCCGACATGAAGCTGAGCTTAGGATTATTTGTGATCTTCG
CCGCTTTGATCGGCTTCACGTCGTCCACGGATGTGAGTCAGTGCCCGAAA
TCCAAATCGAAGGCCCTAGCTGCCGGTGACGTCTCCATTTCCAATTGCCC
CAAGAGCAAGTGCATCCTGAAGCGCAACACGGAGGCCAGCATTCAGATGA
AGATCCGGCCGGAGCGCGACTTCCAGGAGCTGACCTCCGACATCCAGGGC
ATTATCCTGGACGTGCCGCTGCCGTTCCCAGGATATTACGGCACCAGCGC
CTGTCCGCACATCTACGACGAGGCTGGCGAGAAGAAGGTGGGCTGCCCAC
TGAAGGCCGGCCAGGTGTACACCTACAAGAACAGCTTCAAGATCCTGCCC
GTCTACCCGACCGTCAGTTTGGAGATCCACTGGGGATTGGGCGATAAGCA
TGGGGATGCGGCCTGCTTCCAGATACCCGCCAAAATCAAGGCTTAAAAGC
TTTCTAGACC

BS12078.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:27:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG3153-PB 480 CG3153-RB 1..480 17..496 2400 100 Plus
CG3153-PA 480 CG3153-RA 1..480 17..496 2400 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:07:50
Subject Length Description Subject Range Query Range Score Percent Strand
Npc2b-RA 839 CG3153-RA 138..619 17..498 2410 100 Plus
Npc2b-RB 804 CG3153-RB 103..584 17..498 2410 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:07:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14091809..14092205 102..498 1985 100 Plus
3R 32079331 3R 14091317..14091401 17..101 425 100 Plus
Blast to na_te.dros performed on 2015-02-11 09:07:49 has no hits.

BS12078.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:52 Download gff for BS12078.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3153-PA 1..480 17..496 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:00:43 Download gff for BS12078.5prime
Subject Subject Range Query Range Percent Splice Strand
Npc2b-RB 94..584 7..498 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:54:27 Download gff for BS12078.5prime
Subject Subject Range Query Range Percent Splice Strand
Npc2b-RB 94..584 7..498 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:54:27 Download gff for BS12078.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 14091308..14091401 7..101 96 -> Plus
3R 14091809..14092205 102..498 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:00:43 Download gff for BS12078.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9917030..9917123 7..101 96 -> Plus
arm_3R 9917531..9917927 102..498 100   Plus

BS12078.complete Sequence

512 bp assembled on 2006-11-01

GenBank Submission: FJ637062

> BS12078.complete
GAAGTTATCAGTCGACATGAAGCTGAGCTTAGGATTATTTGTGATCTTCG
CCGCTTTGATCGGCTTCACGTCGTCCACGGATGTGAGTCAGTGCCCGAAA
TCCAAATCGAAGGCCCTAGCTGCCGGTGACGTCTCCATTTCCAATTGCCC
CAAGAGCAAGTGCATCCTGAAGCGCAACACGGAGGCCAGCATTCAGATGA
AGATCCGGCCGGAGCGCGACTTCCAGGAGCTGACCTCCGACATCCAGGGC
ATTATCCTGGACGTGCCGCTGCCGTTCCCAGGATATTACGGCACCAGCGC
CTGTCCGCACATCTACGACGAGGCTGGCGAGAAGAAGGTGGGCTGCCCAC
TGAAGGCCGGCCAGGTGTACACCTACAAGAACAGCTTCAAGATCCTGCCC
GTCTACCCGACCGTCAGTTTGGAGATCCACTGGGGATTGGGCGATAAGCA
TGGGGATGCGGCCTGCTTCCAGATACCCGCCAAAATCAAGGCTTAAAAGC
TTTCTAGACCAT

BS12078.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:33:15
Subject Length Description Subject Range Query Range Score Percent Strand
Npc2b-RA 480 CG3153-PA 1..480 17..496 2400 100 Plus
Npc2b-RB 480 CG3153-PB 1..480 17..496 2400 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:33:16
Subject Length Description Subject Range Query Range Score Percent Strand
Npc2b-RA 839 CG3153-RA 138..619 17..498 2410 100 Plus
Npc2b-RB 804 CG3153-RB 103..584 17..498 2410 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:33:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14091809..14092205 102..498 1985 100 Plus
3R 32079331 3R 14091317..14091401 17..101 425 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:33:14 has no hits.

BS12078.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:47:34 Download gff for BS12078.complete
Subject Subject Range Query Range Percent Splice Strand
CG3153-RA 1..480 17..496 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:35:30 Download gff for BS12078.complete
Subject Subject Range Query Range Percent Splice Strand
CG3153-RA 117..607 7..498 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:30:06 Download gff for BS12078.complete
Subject Subject Range Query Range Percent Splice Strand
Npc2b-RB 103..580 17..494 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:47:35 Download gff for BS12078.complete
Subject Subject Range Query Range Percent Splice Strand
CG3153-RA 117..607 7..498 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:47:57 Download gff for BS12078.complete
Subject Subject Range Query Range Percent Splice Strand
Npc2b-RB 103..580 17..494 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:47:57 Download gff for BS12078.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14091317..14091401 17..101 100 -> Plus
3R 14091809..14092201 102..494 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:30:06 Download gff for BS12078.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9917039..9917123 17..101 100 -> Plus
arm_3R 9917531..9917923 102..494 100   Plus

BS12078.pep Sequence

Translation from 16 to 495

> BS12078.pep
MKLSLGLFVIFAALIGFTSSTDVSQCPKSKSKALAAGDVSISNCPKSKCI
LKRNTEASIQMKIRPERDFQELTSDIQGIILDVPLPFPGYYGTSACPHIY
DEAGEKKVGCPLKAGQVYTYKNSFKILPVYPTVSLEIHWGLGDKHGDAAC
FQIPAKIKA*

BS12078.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:26:29
Subject Length Description Subject Range Query Range Score Percent Strand
Npc2b-PA 159 CG3153-PA 1..159 1..159 836 100 Plus
Npc2b-PB 159 CG3153-PB 1..159 1..159 836 100 Plus
Npc2a-PA 148 CG7291-PA 10..148 12..158 178 32.7 Plus