Clone Sequence Records
BS12078.3prime Sequence
510 bp (510 high quality bases) assembled on 2006-06-16
> BS12078.3prime
ATGGTCTAGAAAGCTTTTAAGCCTTGATTTTGGCGGGTATCTGGAAGCAG
GCCGCATCCCCATGCTTATCGCCCAATCCCCAGTGGATCTCCAAACTGAC
GGTCGGGTAGACGGGCAGGATCTTGAAGCTGTTCTTGTAGGTGTACACCT
GGCCGGCCTTCAGTGGGCAGCCCACCTTCTTCTCGCCAGCCTCGTCGTAG
ATGTGCGGACAGGCGCTGGTGCCGTAATATCCTGGGAACGGCAGCGGCAC
GTCCAGGATAATGCCCTGGATGTCGGAGGTCAGCTCCTGGAAGTCGCGCT
CCGGCCGGATCTTCATCTGAATGCTGGCCTCCGTGTTGCGCTTCAGGATG
CACTTGCTCTTGGGGCAATTGGAAATGGAGACGTCACCGGCAGCTAGGGC
CTTCGATTTGGATTTCGGGCACTGACTCACATCCGTGGACGACGTGAAGC
CGATCAAAGCGGCGAAGATCACAAATAATCCTAAGCTCAGCTTCATGTCG
ACTGATAACT
BS12078.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:27:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3153-PB | 480 | CG3153-RB | 1..480 | 496..17 | 2400 | 100 | Minus |
CG3153-PA | 480 | CG3153-RA | 1..480 | 496..17 | 2400 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:07:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Npc2b-RA | 839 | CG3153-RA | 138..619 | 496..15 | 2410 | 100 | Minus |
Npc2b-RB | 804 | CG3153-RB | 103..584 | 496..15 | 2410 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:07:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14091809..14092205 | 411..15 | 1985 | 100 | Minus |
3R | 32079331 | 3R | 14091317..14091401 | 496..412 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:07:43 has no hits.
BS12078.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:52 Download gff for
BS12078.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3153-PA | 1..480 | 17..496 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:00:39 Download gff for
BS12078.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Npc2b-RB | 94..584 | 15..506 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:54:11 Download gff for
BS12078.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Npc2b-RB | 94..584 | 15..506 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:54:11 Download gff for
BS12078.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14091308..14091401 | 412..506 | 96 | -> | Minus |
3R | 14091809..14092205 | 15..411 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:00:39 Download gff for
BS12078.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9917030..9917123 | 412..506 | 96 | -> | Minus |
arm_3R | 9917531..9917927 | 15..411 | 100 | | Minus |
BS12078.5prime Sequence
510 bp (510 high quality bases) assembled on 2006-06-16
> BS12078.5prime
GAAGTTATCACCCGACATGAAGCTGAGCTTAGGATTATTTGTGATCTTCG
CCGCTTTGATCGGCTTCACGTCGTCCACGGATGTGAGTCAGTGCCCGAAA
TCCAAATCGAAGGCCCTAGCTGCCGGTGACGTCTCCATTTCCAATTGCCC
CAAGAGCAAGTGCATCCTGAAGCGCAACACGGAGGCCAGCATTCAGATGA
AGATCCGGCCGGAGCGCGACTTCCAGGAGCTGACCTCCGACATCCAGGGC
ATTATCCTGGACGTGCCGCTGCCGTTCCCAGGATATTACGGCACCAGCGC
CTGTCCGCACATCTACGACGAGGCTGGCGAGAAGAAGGTGGGCTGCCCAC
TGAAGGCCGGCCAGGTGTACACCTACAAGAACAGCTTCAAGATCCTGCCC
GTCTACCCGACCGTCAGTTTGGAGATCCACTGGGGATTGGGCGATAAGCA
TGGGGATGCGGCCTGCTTCCAGATACCCGCCAAAATCAAGGCTTAAAAGC
TTTCTAGACC
BS12078.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:27:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3153-PB | 480 | CG3153-RB | 1..480 | 17..496 | 2400 | 100 | Plus |
CG3153-PA | 480 | CG3153-RA | 1..480 | 17..496 | 2400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:07:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Npc2b-RA | 839 | CG3153-RA | 138..619 | 17..498 | 2410 | 100 | Plus |
Npc2b-RB | 804 | CG3153-RB | 103..584 | 17..498 | 2410 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:07:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14091809..14092205 | 102..498 | 1985 | 100 | Plus |
3R | 32079331 | 3R | 14091317..14091401 | 17..101 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:07:49 has no hits.
BS12078.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:52 Download gff for
BS12078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3153-PA | 1..480 | 17..496 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:00:43 Download gff for
BS12078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Npc2b-RB | 94..584 | 7..498 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:54:27 Download gff for
BS12078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Npc2b-RB | 94..584 | 7..498 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:54:27 Download gff for
BS12078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14091308..14091401 | 7..101 | 96 | -> | Plus |
3R | 14091809..14092205 | 102..498 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:00:43 Download gff for
BS12078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9917030..9917123 | 7..101 | 96 | -> | Plus |
arm_3R | 9917531..9917927 | 102..498 | 100 | | Plus |
BS12078.complete Sequence
512 bp assembled on 2006-11-01
GenBank Submission: FJ637062
> BS12078.complete
GAAGTTATCAGTCGACATGAAGCTGAGCTTAGGATTATTTGTGATCTTCG
CCGCTTTGATCGGCTTCACGTCGTCCACGGATGTGAGTCAGTGCCCGAAA
TCCAAATCGAAGGCCCTAGCTGCCGGTGACGTCTCCATTTCCAATTGCCC
CAAGAGCAAGTGCATCCTGAAGCGCAACACGGAGGCCAGCATTCAGATGA
AGATCCGGCCGGAGCGCGACTTCCAGGAGCTGACCTCCGACATCCAGGGC
ATTATCCTGGACGTGCCGCTGCCGTTCCCAGGATATTACGGCACCAGCGC
CTGTCCGCACATCTACGACGAGGCTGGCGAGAAGAAGGTGGGCTGCCCAC
TGAAGGCCGGCCAGGTGTACACCTACAAGAACAGCTTCAAGATCCTGCCC
GTCTACCCGACCGTCAGTTTGGAGATCCACTGGGGATTGGGCGATAAGCA
TGGGGATGCGGCCTGCTTCCAGATACCCGCCAAAATCAAGGCTTAAAAGC
TTTCTAGACCAT
BS12078.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:33:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Npc2b-RA | 480 | CG3153-PA | 1..480 | 17..496 | 2400 | 100 | Plus |
Npc2b-RB | 480 | CG3153-PB | 1..480 | 17..496 | 2400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:33:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Npc2b-RA | 839 | CG3153-RA | 138..619 | 17..498 | 2410 | 100 | Plus |
Npc2b-RB | 804 | CG3153-RB | 103..584 | 17..498 | 2410 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:33:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14091809..14092205 | 102..498 | 1985 | 100 | Plus |
3R | 32079331 | 3R | 14091317..14091401 | 17..101 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:33:14 has no hits.
BS12078.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:47:34 Download gff for
BS12078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3153-RA | 1..480 | 17..496 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:35:30 Download gff for
BS12078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3153-RA | 117..607 | 7..498 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:30:06 Download gff for
BS12078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Npc2b-RB | 103..580 | 17..494 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:47:35 Download gff for
BS12078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3153-RA | 117..607 | 7..498 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:47:57 Download gff for
BS12078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Npc2b-RB | 103..580 | 17..494 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:47:57 Download gff for
BS12078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14091317..14091401 | 17..101 | 100 | -> | Plus |
3R | 14091809..14092201 | 102..494 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:30:06 Download gff for
BS12078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9917039..9917123 | 17..101 | 100 | -> | Plus |
arm_3R | 9917531..9917923 | 102..494 | 100 | | Plus |
BS12078.pep Sequence
Translation from 16 to 495
> BS12078.pep
MKLSLGLFVIFAALIGFTSSTDVSQCPKSKSKALAAGDVSISNCPKSKCI
LKRNTEASIQMKIRPERDFQELTSDIQGIILDVPLPFPGYYGTSACPHIY
DEAGEKKVGCPLKAGQVYTYKNSFKILPVYPTVSLEIHWGLGDKHGDAAC
FQIPAKIKA*
BS12078.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:26:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Npc2b-PA | 159 | CG3153-PA | 1..159 | 1..159 | 836 | 100 | Plus |
Npc2b-PB | 159 | CG3153-PB | 1..159 | 1..159 | 836 | 100 | Plus |
Npc2a-PA | 148 | CG7291-PA | 10..148 | 12..158 | 178 | 32.7 | Plus |