BS12080.complete Sequence
1652 bp assembled on 2008-08-14
GenBank Submission: FJ637063
> BS12080.complete
GAAGTTATCAGTCGACATGAATCGCTCGACCACGCAATTCGATAAATACA
CCAAAATTTGGAGTGGACCAAGGCCGGCCAGTTTCTTCGATGCGGACTGT
TCGATTGGTAAAATTCTTTTTGCCTTTATGCGAAATCATCCGAACAGCAT
ATGTCAGATTTCCGATACGGAAGGTACAGCCTTAACCAATGGCGAAGCTA
TCACCTTTGCCATTCGCATTGCACAGCAACTGAAGGCTATGGGTCTGAAA
CAGGATGATGTGGTGGGCATCGTGGGGACCAACACTACCTACCTTATGCC
AGTGGTATTGGGATGTCTGCTGAATGGAACACCCTTCCATGCGGTTAGTC
CCTGGCAAGACGAGGATACCATAAAGCATCTGTTCTCTATCACCAGGCCA
AAGTTAATCTTCTGCGACGGAAAATGCTTCCAGCGACTAAGCATCATTGC
CAGGATACTTAAGAGTCATGTCTACACGCTCAAGGATCATCGACTGGGCA
TGCCGCGAGTCGAGGATTTGCTGGAGCCAACTACAGCTGAGCTGTACTAT
GTACCCGAAACTCTTCTCCTGGGAGGTGATCATACCGTCGCTATTCTCTG
TACTTCGGGAACTACGGGTCTGCCAAAGGCCGTTTGCATTAGCAACTCAG
CGTGTCTCTTTGATTTTGGCTTTGTCACTGGCCAGGATGTGCTGCTCTCC
TTCAGCACCATCGATTGGTCTGCGGGTATGTTCAACATGCTCTTCAGTTG
CTGCCATGGCTCTACGCGGATAATCACGGATCGGCCATATACGCCGGAAT
ATATGATCCAGCTGGTGGAGAAGTACAAGGTGACCTTGTTGACAGTGGTG
CCGCAGCAGGTGGCCTCTCTGTTGAAGACGCCCACCCTTAATAAACAGCG
CCTAGCCAGCATACGTTTCGTCAGCGTTGGCGGTGGCTCCTGCTATGTGG
CCAATCTTCTCAAGCTGCAGGAATTCCTAATCACCGGGCAGATATCCTAC
GGCTATGCCTTGACCGAATGCGGAGGAGTGGCGGCAAATATGGGCGTGGC
AAAGCCATCATCGGTGGGCAGGATTGTGCCCGGAGTGAGGGTTAAGATAT
TGGACGAAGCCGGCCGAAGTCTGGGACACGGAGAGACGGGTGAGATCCTG
GTGCACAATGGCAAGGTGTGGAATGGCTACTACGCCAATCCGAATGAATC
GAAGCGCATGCAGGACTACCAGGGCTGGTTCCACACCGGAGACATGGGCT
ACTTCGACAACGAGAACTACCTGCATATCGTGGAGCGAAAGGAGGATCTT
CTGCGCTTCCATGGTGCCCAGTATTCTCCCCAAGAAATTGAGCAGGTCAT
CGCCGAGCTGCCGGACGTGATCGAAGCCTGTGTCTTTGGCCTGTGGAACG
AGGTGGATGGCGATCCTGCGGCGGCGGCTGTCGTCAAAATACCTGGCAGT
CGTCTCACCGAAATGGATATCGTGGAATATGTGGCCAAGCGCCTGGTGGT
CGACCACAAGCAGCTTCACTGCGGCGTCTTCTTCCTGCCCGAACTGCCGA
AAACTGGAAGCGGCAAGGTTCTACGTCAGCAGGCACGCGATCAGGCACTG
GGTAAAAAATGGGCCGATCACGGCAACGGCCACTAAAAGCTTTCTAGACC
AT
BS12080.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:56:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11453-RA | 1620 | CG11453-PA | 1..1620 | 17..1636 | 8100 | 100 | Plus |
| CG8834-RA | 1608 | CG8834-PA | 1122..1275 | 1138..1291 | 200 | 75.3 | Plus |
| CG4830-RA | 1605 | CG4830-PA | 1192..1256 | 1208..1272 | 190 | 86.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:57:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11453-RA | 1831 | CG11453-RA | 97..1716 | 17..1636 | 8100 | 100 | Plus |
| CG8834-RA | 1832 | CG8834-RA | 1174..1327 | 1138..1291 | 200 | 75.3 | Plus |
| CG4830-RA | 1861 | CG4830-RA | 1247..1311 | 1208..1272 | 190 | 86.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:56:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19784437..19785404 | 669..1636 | 4840 | 100 | Plus |
| 3R | 32079331 | 3R | 19783812..19784208 | 156..552 | 1985 | 100 | Plus |
| 3R | 32079331 | 3R | 19783618..19783758 | 17..157 | 705 | 100 | Plus |
| 3R | 32079331 | 3R | 19784269..19784385 | 553..669 | 585 | 100 | Plus |
| 2R | 25286936 | 2R | 12420980..12421133 | 1291..1138 | 200 | 75.3 | Minus |
| 3R | 32079331 | 3R | 12208709..12208773 | 1272..1208 | 190 | 86.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:56:59 has no hits.
BS12080.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:49:02 Download gff for
BS12080.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11453-RA | 88..1728 | 8..1649 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:59:57 Download gff for
BS12080.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11453-RA | 97..1714 | 17..1634 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:57:47 Download gff for
BS12080.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11453-RA | 96..1713 | 17..1634 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:58:51 Download gff for
BS12080.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11453-RA | 97..1714 | 17..1634 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:58:51 Download gff for
BS12080.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19783618..19783758 | 17..157 | 100 | -> | Plus |
| 3R | 19783814..19784208 | 158..552 | 100 | -> | Plus |
| 3R | 19784269..19784385 | 553..669 | 100 | -> | Plus |
| 3R | 19784438..19785402 | 670..1634 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:59:57 Download gff for
BS12080.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15609340..15609480 | 17..157 | 100 | -> | Plus |
| arm_3R | 15609536..15609930 | 158..552 | 100 | -> | Plus |
| arm_3R | 15609991..15610107 | 553..669 | 100 | -> | Plus |
| arm_3R | 15610160..15611124 | 670..1634 | 100 | | Plus |
BS12080.pep Sequence
Translation from 16 to 1635
> BS12080.pep
MNRSTTQFDKYTKIWSGPRPASFFDADCSIGKILFAFMRNHPNSICQISD
TEGTALTNGEAITFAIRIAQQLKAMGLKQDDVVGIVGTNTTYLMPVVLGC
LLNGTPFHAVSPWQDEDTIKHLFSITRPKLIFCDGKCFQRLSIIARILKS
HVYTLKDHRLGMPRVEDLLEPTTAELYYVPETLLLGGDHTVAILCTSGTT
GLPKAVCISNSACLFDFGFVTGQDVLLSFSTIDWSAGMFNMLFSCCHGST
RIITDRPYTPEYMIQLVEKYKVTLLTVVPQQVASLLKTPTLNKQRLASIR
FVSVGGGSCYVANLLKLQEFLITGQISYGYALTECGGVAANMGVAKPSSV
GRIVPGVRVKILDEAGRSLGHGETGEILVHNGKVWNGYYANPNESKRMQD
YQGWFHTGDMGYFDNENYLHIVERKEDLLRFHGAQYSPQEIEQVIAELPD
VIEACVFGLWNEVDGDPAAAAVVKIPGSRLTEMDIVEYVAKRLVVDHKQL
HCGVFFLPELPKTGSGKVLRQQARDQALGKKWADHGNGH*
BS12080.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:59:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11453-PA | 539 | CG11453-PA | 1..539 | 1..539 | 2851 | 100 | Plus |
| CG8834-PA | 535 | CG8834-PA | 6..525 | 6..525 | 1327 | 47.3 | Plus |
| CG4830-PA | 534 | CG4830-PA | 1..533 | 1..531 | 1187 | 42.4 | Plus |
| CG11407-PA | 538 | CG11407-PA | 4..523 | 3..520 | 1086 | 41.5 | Plus |
| CG4563-PA | 537 | CG4563-PA | 9..527 | 6..525 | 1048 | 39.9 | Plus |
