Clone Sequence Records
BS12082.3prime Sequence
766 bp (682 high quality bases) assembled on 2006-06-16
> BS12082.3prime
ATGGTCTAGAAAGCTTTTAAACTATCATCTCGAGGTCGCGGGCGTAGCTG
AGCACCTGCTCGGCGAGTTCCTCGGAGGGCAGGAGCTCCTTGGGTTTGAC
GCTACGGTCCGTGAAGCTGTAGTCGCCGCTAGCCTCCAGTTTCCATTGAC
GCTTCGCGCCGAAGGCCTTGATCTCGTCGGGGACGCGCAGGTTGAGCCGC
TTGGCTGCATCCTTGGCGGAGATCTTGTCGTAGGACTTCTCGATGCAGGC
ACCAATTTCATCGCGCACCGTTTCCAACAGAAGATCCATAAAGTAGCTAT
ACACCTCGACGGGCACCGTCGACTTGGCCTGAAAGATCTTGTTGTAGCGT
CCCTCCATGATGTACTGCTCGAGCGCCAGGATGGGCCGAATGAACTGATT
GTGCTGGATGACGTCCACGGAGAGCAGCTCCAGTTCCGTGTGAAAGTCGG
ATACCCGGTTGCCAGACAAGAGGTACAGCAGATTCAGACCGAGCAGCTTA
TACTTGCTCTCCGATTCGCCAATGATCTTAGCGTAGTCATAGTAATAGCA
CTTCAGCTGCGCCATGTAGCGCTCGAAGGCGAGCAGGTCCTTGCTGAGCA
CGCTATGCTCCACGGCCACCTCAAGCACGCTCCTAGCCAGGATCAATTGC
TTCTTGGAGCTCTGGGCATCGTTTCCGTCCGTCGGCAGGAAGGCCATCTT
CACGAGCGCTACTTTCAGTTGATCCAGCAGCTGGCCGCATTTGACGGTGT
TTGGTGGCCGCTTTGA
BS12082.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:27:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4157-PA | 795 | Rpn12-RA | 46..795 | 766..17 | 3750 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:49:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn12-RA | 995 | CG4157-RA | 118..867 | 766..17 | 3750 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:49:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16583145..16583894 | 766..17 | 3750 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 11:49:23 has no hits.
BS12082.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:53 Download gff for
BS12082.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4157-PA | 47..795 | 17..765 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:37:11 Download gff for
BS12082.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn12-RA | 119..867 | 17..765 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:42:27 Download gff for
BS12082.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn12-RA | 119..867 | 17..765 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:42:27 Download gff for
BS12082.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16583146..16583894 | 17..765 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:37:11 Download gff for
BS12082.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16576246..16576994 | 17..765 | 100 | | Minus |
BS12082.complete Sequence
827 bp assembled on 2006-11-01
GenBank Submission: FJ637064
> BS12082.complete
GAAGTTATCAGTCGACATGGCCAACGTGGAATCGCTGTACAAAGAACTGA
CCGCCGAGTGGTCAAAGCGGCCACCAAACACCGTCAAATGCGGCCAGCTG
CTGGATCAACTGAAAGTAGCGCTCGTGAAGATGGCCTTCCTGCCGACGGA
CGGAAACGATGCCCAGAGCTCCAAGAAGCAATTGATCCTGGCTAGGAGCG
TGCTTGAGGTGGCCGTGGAGCATAGCGTGCTCAGCAAGGACCTGCTCGCC
TTCGAGCGCTACATGGCGCAGCTGAAGTGCTATTACTATGACTACGCTAA
GATCATTGGCGAATCGGAGAGCAAGTATAAGCTGCTCGGTCTGAATCTGC
TGTACCTCTTGTCTGGCAACCGGGTATCCGACTTTCACACGGAACTGGAG
CTGCTCTCCGTGGACGTCATCCAGCACAATCAGTTCATTCGGCCCATCCT
GGCGCTCGAGCAGTACATCATGGAGGGACGCTACAACAAGATCTTTCAGG
CCAAGTCGACGGTGCCCGTCGAGGTGTATAGCTACTTTATGGATCTTCTG
TTGGAAACGGTGCGCGATGAAATTGGTGCCTGCATCGAGAAGTCCTACGA
CAAGATCTCCGCCAAGGATGCAGCCAAGCGGCTCAACCTGCGCGTCCCCG
ACGAGATCAAGGCCTTCGGCGCGAAGCGTCAATGGAAACTGGAGGCTAGC
GGCGACTACAGCTTCACGGACCGTAGCGTCAAACCCAAGGAGCTCCTGCC
CTCCGAGGAACTCGCCGAGCAGGTGCTCAGCTACGCCCGCGACCTCGAGA
TGATAGTTTAAAAGCTTTCTAGACCAT
BS12082.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:21:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn12-RA | 795 | CG4157-PA | 1..795 | 17..811 | 3975 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:21:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn12-RA | 995 | CG4157-RA | 73..867 | 17..811 | 3975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:21:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16583100..16583894 | 17..811 | 3975 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:21:06 has no hits.
BS12082.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:47:30 Download gff for
BS12082.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn12-RA | 1..795 | 17..811 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:35:27 Download gff for
BS12082.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn12-RA | 116..912 | 14..811 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:47:12 Download gff for
BS12082.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn12-RA | 73..865 | 17..809 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:47:30 Download gff for
BS12082.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn12-RA | 116..912 | 14..811 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:51:43 Download gff for
BS12082.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn12-RA | 73..865 | 17..809 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:51:43 Download gff for
BS12082.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16583100..16583892 | 17..809 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:47:12 Download gff for
BS12082.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16576200..16576992 | 17..809 | 100 | | Plus |
BS12082.pep Sequence
Translation from 16 to 810
> BS12082.pep
MANVESLYKELTAEWSKRPPNTVKCGQLLDQLKVALVKMAFLPTDGNDAQ
SSKKQLILARSVLEVAVEHSVLSKDLLAFERYMAQLKCYYYDYAKIIGES
ESKYKLLGLNLLYLLSGNRVSDFHTELELLSVDVIQHNQFIRPILALEQY
IMEGRYNKIFQAKSTVPVEVYSYFMDLLLETVRDEIGACIEKSYDKISAK
DAAKRLNLRVPDEIKAFGAKRQWKLEASGDYSFTDRSVKPKELLPSEELA
EQVLSYARDLEMIV*
BS12082.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:26:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn12-PA | 264 | CG4157-PA | 1..264 | 1..264 | 1328 | 100 | Plus |
| Rpn12R-PA | 262 | CG11552-PA | 1..262 | 4..264 | 660 | 49.6 | Plus |
