Clone Sequence Records
BS12083.complete Sequence
2696 bp assembled on 2010-07-15
GenBank Submission: KX803822
> BS12083.complete
GAAGTTATCAGTCGACATGCCGCCGTTTAATTTCATCAAGCAGGAGATCC
GTCCCAACACCATTCCGGACTTAAAGGTGGATGCCACATTTCGGAAGGTG
GCTAAACATGCGATTACCTTTGCGATTTGGAAGATAGACGAGGATCGCCT
GGAGGCGGTACAAAGATCACATTATGGCACCTTCTACGATAGCTGCGCCT
ACATTATCTATGCAGCAAGTTTGTCGGGGCATTATGCCAATCACGAAACC
ATCACACGCGAACAGAAGCCGAATGTGAGTCTTGAGCGATATATCCACTA
CTGGCTGGGCAAGAATGTTAGCGAGCAGAATCGATCCAATGTTGTTCATA
AAATCCAGGAGCTGGACTCGTATCTGGGAAACATATCCTCTATTTACCGA
GAGACCCAGAATCTGGAGAGTGCGAGATTCCTTTCGTATTTCAAGAAGGG
TTACGATGTTCGATCGGGAGCACTAATAAGCGCGCCCCAGAGGCCACGAC
TTTTTCAATTGTACGCCCGCAAATGGTTGCGATCCATTGAGGTGGCCACC
ATCGATTGGTCGCACTTTAACTCGGATTACGTAATGGTCCTGCAAACGGA
TAATCTTACCTACGTCTGGATAGGGCGCTCCAGTTCAGGAATTGAACGAC
GAAGTGCCCTCGACTGGGTCCAAAAGCACTGCAGTGGATCGCCAATCACT
ATAGTCGATGATGGATATGAGCAGGCCATGTCCCAGGAGCACAAGGAGCT
GTGGAACACCATGCTTCCGCTAAAGAAACGCATGGTCTGTCAGGCCAGTC
AGTTGGTCAGCGAATACGCCGACTACAATAGCAATAAGTTCCGCATCTAT
AAGTGCAATCAACGGGGAAGGCTGCACCTGGATCAATTGGATGTGGGCAT
GCCAGCAAAAGATGATCTAAGCGATGCCCATGGAGTCTATTTACTGGACA
ACTACGGCCAGAGTATTTGGTTGTGGGTAGGAGGCCAGGCACCGCAGGCA
GATGCCCTTTCTGCCATGGGAAATGGGAGAGCTTTTGTTAAAAAGAAGAA
ATATCCGGATAATACGTTGGTGGTGCGTGTCCTCGAGGGTCACGAGCCCG
TGGAGTTTAAGCGTCTCTTTGCCAACTGGTTAAATGTTTGGCAGGAGAAC
ACCAGGGGACATAAGCCAGTGTCCACAAAGTTTGGAAAGCTAGATGCCCA
TTCCCTATGCGAACGCCCTAAAATGGCTGCAGATACACAGCTCGTTGATG
ATGGCAGGGGTGAAAGAGTAATCTATCGTGTCTTCGGAGATCAGGTGCAA
GAGGTGCCCATCTCAAAAACGGTTGTGTTCACCACCAATGCCAGTTTCGT
GGTCAAGTACAGCGTGCAGTGCGCCACCGTTGTTCCCGCAGATTTGGCCT
CCGTTGGCATTAAAACAATCATCTACCAGTGGAATGGTTCGGAGGCCTCT
GTAGAGTCCATTTCCCGGGCGGACAAGTTCGCCAAGGCCAGTTTTGATGG
GCTCAAGGAGCCTGGAATGTTTGTACAGCTCTATGAGTTCGATGAACCAC
CGCACTTCCTTCAGATCTTCGAGGGAAAACTTATTATCAGGCGCGGTCAG
CGTACCGAGATGCCTTACAATGGTAACTCCAATGCCTTGCTGGACACCTT
TCTGCTGAAAGTTTATGGCGATGCTAGCTACAATGCCAAGGCTGTGGAGG
AGACACATCTGTCATCGATCAGCTCCAAAGATTGCTATGTGATCAAAACG
AATCATGTTTGGGTGTGGTGCGGGCAAAGTAGCACGGGAGATGCCCGCGA
GATGGCCAAAGCAGTGGGAGCTCTGATGGGGGAAAACTCTCTGGTCCTCG
AAGGCAAGGAAAGTAAGGAGTTCTGGCAATCGGTGGCCATGTACTTCAAC
CAAACTCTAGTGATCAACGGAAATGGGAACTCATGTTCCAGCAGCACCAG
TAGCAGCAGTGGCGCCGGCAGCATGTGCAATGGTAGCTCCAATGGTGGTA
ACATTTCACCCACTCTCAGCAATAATTGTTACCTAAACACCAGTGTTCCG
AGTAAACCGAGACCTCCTGTACAACTATTTCTGGTATGGTGGCAACAGAG
TTCGCTGAGATACGAGGAGATTCTCGGATTCGATCAGCAGGATCTCAGTT
CGGATTGCACCTATATTCTGGACACTGGGAGCCTCACCTACGTCTGGCTG
GGATCGCAGGCCCCAAACCAGGAACGCTACACAGCGATTGCCCAAAGTTA
TGTCCAAAATGCTCCATTCGGACGCAGATCAGCGACAGCGTTGGCCGTGG
TCAGGCAGTTTCAGGAGCCAAATGTTTTCAAGGGATTCTTCGAGTCCTGG
CAAAACGATTACGGCAAGAACTTCCATTCCTACGAGAAAATGCGCAAGGA
TCTGGGAAATAAAGTGACCAGCAATTGTTGCTTCGCAAGCGAAGGATCGG
CTCTAATCCTGAACAACAGACAGAAGGACTTTGATGGTCACAAAAAGTAT
CCATTAACCGTGCTCATCCAGGAAATGGATATGCTGCCACCAGATATTAA
TCCGCTCAAGAGGGAGGTTCACCTAACACACGATGATTTTGTGTCAGTGT
TTAATATGTCCTTTTATGAATTTGACGAGCTGCCGAAATGGAAGAAAATG
GAGCTGAAAAAGCAATTCAAGCTTTTTTAGAAGCTTTCTAGACCAT
BS12083.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:32:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| qua-RA | 2664 | CG6433-PA | 1..2664 | 17..2680 | 13320 | 100 | Plus |
| qua-RB | 2667 | CG6433-PB | 30..2667 | 43..2680 | 13190 | 100 | Plus |
| qua-RC | 2679 | CG6433-PC | 30..2679 | 43..2680 | 13035 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:32:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| qua-RA | 3266 | CG6433-RA | 448..3112 | 17..2681 | 13325 | 100 | Plus |
| qua-RB | 3306 | CG6433-RB | 514..3152 | 43..2681 | 13195 | 100 | Plus |
| qua-RC | 3318 | CG6433-RC | 514..3164 | 43..2681 | 13040 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:32:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 17487402..17488403 | 2368..1367 | 5010 | 100 | Minus |
| 2L | 23513712 | 2L | 17488457..17489369 | 1369..457 | 4565 | 100 | Minus |
| 2L | 23513712 | 2L | 17489693..17489904 | 253..42 | 1060 | 100 | Minus |
| 2L | 23513712 | 2L | 17489431..17489633 | 456..254 | 1015 | 100 | Minus |
| 2L | 23513712 | 2L | 17487138..17487339 | 2568..2367 | 1010 | 100 | Minus |
| 2L | 23513712 | 2L | 17486960..17487076 | 2681..2565 | 585 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:32:48 has no hits.
BS12083.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-15 13:47:12 Download gff for
BS12083.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qua-RA | 443..3106 | 17..2680 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:07:52 Download gff for
BS12083.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qua-RA | 448..3111 | 17..2680 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:51:59 Download gff for
BS12083.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qua-RA | 448..3111 | 17..2680 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:51:59 Download gff for
BS12083.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 17486961..17487074 | 2567..2680 | 100 | <- | Minus |
| 2L | 17487140..17487337 | 2369..2566 | 100 | <- | Minus |
| 2L | 17487402..17488400 | 1370..2368 | 100 | <- | Minus |
| 2L | 17488457..17489369 | 457..1369 | 100 | <- | Minus |
| 2L | 17489431..17489633 | 254..456 | 100 | <- | Minus |
| 2L | 17489693..17489902 | 44..253 | 100 | <- | Minus |
| 2L | 17496735..17496761 | 17..43 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:07:52 Download gff for
BS12083.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 17486961..17487074 | 2567..2680 | 100 | <- | Minus |
| arm_2L | 17487140..17487337 | 2369..2566 | 100 | <- | Minus |
| arm_2L | 17487402..17488400 | 1370..2368 | 100 | <- | Minus |
| arm_2L | 17488457..17489369 | 457..1369 | 100 | <- | Minus |
| arm_2L | 17489431..17489633 | 254..456 | 100 | <- | Minus |
| arm_2L | 17489693..17489902 | 44..253 | 100 | <- | Minus |
| arm_2L | 17496735..17496761 | 17..43 | 100 | | Minus |
BS12083.5prime Sequence
215 bp (132 high quality bases) assembled on 2010-02-21
> BS12083.5prime
AGTCCCCTACATGCCGCCGTTTAATTTCATCAAGCAGGAGATCCGTCCCA
ACACCATTCCAGACTTAAAGGTGGATGCCACATTTCGGAAGGTGGCTAAA
CATGCGATTACCTTTGCGATTTGGAAGATAAACAATGATCGCCTGTAGGC
GGTACAAACATCACATTATGGCTCCTTCTACTATAGCTGCGCCTACATTA
TCTATGCAGCAGGTT
BS12083.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:26:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| qua-RA | 3266 | CG6433-RA | 448..652 | 11..215 | 890 | 95.6 | Plus |
| qua-RC | 3318 | CG6433-RC | 514..692 | 37..215 | 760 | 95 | Plus |
| qua-RB | 3306 | CG6433-RB | 514..692 | 37..215 | 760 | 95 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:26:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 17489725..17489904 | 215..36 | 765 | 95 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:26:18 has no hits.
BS12083.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-21 04:07:36 Download gff for
BS12083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qua-RA | 443..647 | 11..215 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 03:30:47 Download gff for
BS12083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qua-RA | 448..652 | 11..215 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:30:13 Download gff for
BS12083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qua-RA | 448..652 | 11..215 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:30:13 Download gff for
BS12083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 17489725..17489902 | 38..215 | 94 | <- | Minus |
| 2L | 17496735..17496761 | 11..37 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 03:30:47 Download gff for
BS12083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 17489725..17489902 | 38..215 | 94 | <- | Minus |
| arm_2L | 17496735..17496761 | 11..37 | 100 | | Minus |
BS12083.pep Sequence
Translation from 16 to 2679
> BS12083.pep
MPPFNFIKQEIRPNTIPDLKVDATFRKVAKHAITFAIWKIDEDRLEAVQR
SHYGTFYDSCAYIIYAASLSGHYANHETITREQKPNVSLERYIHYWLGKN
VSEQNRSNVVHKIQELDSYLGNISSIYRETQNLESARFLSYFKKGYDVRS
GALISAPQRPRLFQLYARKWLRSIEVATIDWSHFNSDYVMVLQTDNLTYV
WIGRSSSGIERRSALDWVQKHCSGSPITIVDDGYEQAMSQEHKELWNTML
PLKKRMVCQASQLVSEYADYNSNKFRIYKCNQRGRLHLDQLDVGMPAKDD
LSDAHGVYLLDNYGQSIWLWVGGQAPQADALSAMGNGRAFVKKKKYPDNT
LVVRVLEGHEPVEFKRLFANWLNVWQENTRGHKPVSTKFGKLDAHSLCER
PKMAADTQLVDDGRGERVIYRVFGDQVQEVPISKTVVFTTNASFVVKYSV
QCATVVPADLASVGIKTIIYQWNGSEASVESISRADKFAKASFDGLKEPG
MFVQLYEFDEPPHFLQIFEGKLIIRRGQRTEMPYNGNSNALLDTFLLKVY
GDASYNAKAVEETHLSSISSKDCYVIKTNHVWVWCGQSSTGDAREMAKAV
GALMGENSLVLEGKESKEFWQSVAMYFNQTLVINGNGNSCSSSTSSSSGA
GSMCNGSSNGGNISPTLSNNCYLNTSVPSKPRPPVQLFLVWWQQSSLRYE
EILGFDQQDLSSDCTYILDTGSLTYVWLGSQAPNQERYTAIAQSYVQNAP
FGRRSATALAVVRQFQEPNVFKGFFESWQNDYGKNFHSYEKMRKDLGNKV
TSNCCFASEGSALILNNRQKDFDGHKKYPLTVLIQEMDMLPPDINPLKRE
VHLTHDDFVSVFNMSFYEFDELPKWKKMELKKQFKLF*
BS12083.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:37:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| qua-PA | 887 | CG6433-PA | 1..887 | 1..887 | 4702 | 100 | Plus |
| qua-PB | 888 | CG6433-PB | 11..888 | 10..887 | 4651 | 100 | Plus |
| qua-PC | 892 | CG6433-PC | 11..892 | 10..887 | 4632 | 99.4 | Plus |
| Gel-PL | 740 | CG1106-PL | 16..740 | 37..800 | 465 | 24.8 | Plus |
| Gel-PA | 740 | CG1106-PA | 16..740 | 37..800 | 465 | 24.8 | Plus |
