Clone BS12084 Report

Search the DGRC for BS12084

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:120
Well:84
Vector:pDNR-Dual
Associated Gene/TranscriptCG3734-RA
Protein status:BS12084.pep: full length peptide match
Sequenced Size:1454

Clone Sequence Records

BS12084.complete Sequence

1454 bp assembled on 2009-12-07

GenBank Submission: KX806488

> BS12084.complete
GAAGTTATCAGTCGACATGAAGCTTTGGCTAGGCATTTCTTTGGCTCTGT
TGGCCCTGGGCCAAACCCATGGTAGCATCTTTGAGAGGACTTTCAAAAGG
ATCCACGAGGAGCCACCACTGCCAACCACTCAGAATCGAGCTGATGTAGT
TCAAACCCTTTGGATTGAACAGAAGCTGGATCACTTCGACCCGGAAGAAA
CGCGCACATGGCAAATGCGCTATATGCTCAACGATGCACTTTACCAGTCT
GGAGCACCACTTTTTATTTATCTTGGCGGAGAATGGGAGATCTCATCGGG
CAGAATAACCGGCGGTCACCTATACGACATGGCCAAGGAGCACAATGCTC
TTTTGGCCTACACAGAGCATCGCTACTATGGCCAAAGCAAGCCCTTGCCT
GATCTATCGAACGAAAACATAAAATACCTAAATGTTAATCAGTCCCTGGC
CGATCTGGCTTATTTCATAAACACCATCAAGCAAAACCACGAAGGTTTGT
CCGATTCCAAGGTCATTATTGTTGGAGGTTCCTACTCTGCCACTATGGTC
ACCTGGTTCAAGAAGCTCTATCCCGATCTGGTGGCTGGAGGTTGGGCTTC
CAGTGCTCCGCTCCTTGCCAAGGTCAACTTTGTTGAGTACAAAGAAATCA
CTGGCCAATCCATCGAACAAATGGGTGGATCTGCCTGCTACAAGCGAATT
GAAAACGGCATTGCCGAGATGGAGACCATGATAGCCACCAAACGAGGTGC
AGAGGTCAAGGCCCTGCTCAAGTTGTGCGAACCCTTTGATGTCTACAGCG
ATCTGGATGTTTGGACTTTGTTCAGCGAGATTTCCGATATTTTTGCGGGC
GTGGTCCAGACTCACAATGCTGGTCAAATTGAGGGTGTTTGCGAGAAGAT
AATGGCCGGTTCGAATGATCTTATTGGCGTTGCTGGATATTTGTTGGATG
TATTCGAGGAGAGCGGTGGCAAGTGCTACGACCTTAGCTATGATGCAATT
ACTGCATTACTTCTGGACACTAATTACAATGGCAACATTATGCGTCAGTG
GATCTTCCAGACCTGCAATGAGTATGGTTGGTATCAGACCTCTGGTTCTA
GTGCCCAACCATTTGGTACCAAATTCCCTGTTACCTATTATACCACCATG
TGTGCCGATTTATATGGCTCAGAGTACAGCAACGAGTTCATTAGCAACCA
AGTGAGCATCACCAATCAGTTCTTTGGTGGATTATTTCCTAATGTGGAAA
ACGTCTACCTCACCCATGGGCAATTGGATCCCTGGAGGGCGATGGGTATT
CAGGACGAAACTCAGGCCACTATTATTCCAGAGCATGCCCATTGCAAGGA
CTTCAATTCGATCAGCTCGAGTGACACTGCTGAAATGAGAGCTTCCAAAG
AACGTATTGCCGAACTGGTACGCGAGTGGGTTAAATAAAAGCTTTCTAGA
CCAT

BS12084.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:24:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG3734-RB 1422 CG3734-PB 1..1422 17..1438 7095 99.9 Plus
CG3734-RA 1422 CG3734-PA 1..1422 17..1438 7095 99.9 Plus
CG18493-RA 1443 CG18493-PA 1063..1135 1058..1130 185 83.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:24:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG3734-RB 1536 CG3734-RB 51..1472 17..1438 7095 99.9 Plus
CG3734-RA 1619 CG3734-RA 134..1555 17..1438 7095 99.9 Plus
CG18493-RA 1566 CG18493-RA 1078..1150 1058..1130 185 83.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:24:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19389343..19389633 1041..1331 1455 100 Plus
3R 32079331 3R 19388515..19388750 400..635 1180 100 Plus
3R 32079331 3R 19388811..19389043 635..867 1165 100 Plus
3R 32079331 3R 19387994..19388194 17..217 990 99.5 Plus
3R 32079331 3R 19388272..19388454 217..399 915 100 Plus
3R 32079331 3R 19389104..19389276 868..1040 865 100 Plus
3R 32079331 3R 19389694..19389802 1330..1438 545 100 Plus
3R 32079331 3R 19391644..19391716 1058..1130 185 83.6 Plus
Blast to na_te.dros performed on 2014-11-28 02:24:29 has no hits.

BS12084.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:49:39 Download gff for BS12084.complete
Subject Subject Range Query Range Percent Splice Strand
CG3734-RA 136..1555 17..1436 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:13:30 Download gff for BS12084.complete
Subject Subject Range Query Range Percent Splice Strand
CG3734-RA 134..1553 17..1436 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:19:24 Download gff for BS12084.complete
Subject Subject Range Query Range Percent Splice Strand
CG3734-RA 136..1555 17..1436 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:10:46 Download gff for BS12084.complete
Subject Subject Range Query Range Percent Splice Strand
CG3734-RA 134..1553 17..1436 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:10:46 Download gff for BS12084.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19389343..19389633 1041..1331 100 -> Plus
3R 19387994..19388194 17..217 99 -> Plus
3R 19388273..19388454 218..399 100 -> Plus
3R 19388515..19388750 400..635 100 -> Plus
3R 19388812..19389043 636..867 100 -> Plus
3R 19389104..19389276 868..1040 100 -> Plus
3R 19389696..19389800 1332..1436 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:13:30 Download gff for BS12084.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15213995..15214176 218..399 100 -> Plus
arm_3R 15214237..15214472 400..635 100 -> Plus
arm_3R 15213716..15213916 17..217 99 -> Plus
arm_3R 15214534..15214765 636..867 100 -> Plus
arm_3R 15214826..15214998 868..1040 100 -> Plus
arm_3R 15215065..15215355 1041..1331 100 -> Plus
arm_3R 15215418..15215522 1332..1436 100   Plus

BS12084.pep Sequence

Translation from 16 to 1437

> BS12084.pep
MKLWLGISLALLALGQTHGSIFERTFKRIHEEPPLPTTQNRADVVQTLWI
EQKLDHFDPEETRTWQMRYMLNDALYQSGAPLFIYLGGEWEISSGRITGG
HLYDMAKEHNALLAYTEHRYYGQSKPLPDLSNENIKYLNVNQSLADLAYF
INTIKQNHEGLSDSKVIIVGGSYSATMVTWFKKLYPDLVAGGWASSAPLL
AKVNFVEYKEITGQSIEQMGGSACYKRIENGIAEMETMIATKRGAEVKAL
LKLCEPFDVYSDLDVWTLFSEISDIFAGVVQTHNAGQIEGVCEKIMAGSN
DLIGVAGYLLDVFEESGGKCYDLSYDAITALLLDTNYNGNIMRQWIFQTC
NEYGWYQTSGSSAQPFGTKFPVTYYTTMCADLYGSEYSNEFISNQVSITN
QFFGGLFPNVENVYLTHGQLDPWRAMGIQDETQATIIPEHAHCKDFNSIS
SSDTAEMRASKERIAELVREWVK*

BS12084.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:15:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG3734-PB 473 CG3734-PB 1..473 1..473 2508 100 Plus
CG3734-PA 473 CG3734-PA 1..473 1..473 2508 100 Plus
CG18493-PA 480 CG18493-PA 34..479 24..472 1337 54.1 Plus
CG3739-PB 485 CG3739-PB 18..484 10..473 948 41.1 Plus
CG9953-PA 508 CG9953-PA 11..496 5..468 669 33.4 Plus