BS12084.complete Sequence
1454 bp assembled on 2009-12-07
GenBank Submission: KX806488
> BS12084.complete
GAAGTTATCAGTCGACATGAAGCTTTGGCTAGGCATTTCTTTGGCTCTGT
TGGCCCTGGGCCAAACCCATGGTAGCATCTTTGAGAGGACTTTCAAAAGG
ATCCACGAGGAGCCACCACTGCCAACCACTCAGAATCGAGCTGATGTAGT
TCAAACCCTTTGGATTGAACAGAAGCTGGATCACTTCGACCCGGAAGAAA
CGCGCACATGGCAAATGCGCTATATGCTCAACGATGCACTTTACCAGTCT
GGAGCACCACTTTTTATTTATCTTGGCGGAGAATGGGAGATCTCATCGGG
CAGAATAACCGGCGGTCACCTATACGACATGGCCAAGGAGCACAATGCTC
TTTTGGCCTACACAGAGCATCGCTACTATGGCCAAAGCAAGCCCTTGCCT
GATCTATCGAACGAAAACATAAAATACCTAAATGTTAATCAGTCCCTGGC
CGATCTGGCTTATTTCATAAACACCATCAAGCAAAACCACGAAGGTTTGT
CCGATTCCAAGGTCATTATTGTTGGAGGTTCCTACTCTGCCACTATGGTC
ACCTGGTTCAAGAAGCTCTATCCCGATCTGGTGGCTGGAGGTTGGGCTTC
CAGTGCTCCGCTCCTTGCCAAGGTCAACTTTGTTGAGTACAAAGAAATCA
CTGGCCAATCCATCGAACAAATGGGTGGATCTGCCTGCTACAAGCGAATT
GAAAACGGCATTGCCGAGATGGAGACCATGATAGCCACCAAACGAGGTGC
AGAGGTCAAGGCCCTGCTCAAGTTGTGCGAACCCTTTGATGTCTACAGCG
ATCTGGATGTTTGGACTTTGTTCAGCGAGATTTCCGATATTTTTGCGGGC
GTGGTCCAGACTCACAATGCTGGTCAAATTGAGGGTGTTTGCGAGAAGAT
AATGGCCGGTTCGAATGATCTTATTGGCGTTGCTGGATATTTGTTGGATG
TATTCGAGGAGAGCGGTGGCAAGTGCTACGACCTTAGCTATGATGCAATT
ACTGCATTACTTCTGGACACTAATTACAATGGCAACATTATGCGTCAGTG
GATCTTCCAGACCTGCAATGAGTATGGTTGGTATCAGACCTCTGGTTCTA
GTGCCCAACCATTTGGTACCAAATTCCCTGTTACCTATTATACCACCATG
TGTGCCGATTTATATGGCTCAGAGTACAGCAACGAGTTCATTAGCAACCA
AGTGAGCATCACCAATCAGTTCTTTGGTGGATTATTTCCTAATGTGGAAA
ACGTCTACCTCACCCATGGGCAATTGGATCCCTGGAGGGCGATGGGTATT
CAGGACGAAACTCAGGCCACTATTATTCCAGAGCATGCCCATTGCAAGGA
CTTCAATTCGATCAGCTCGAGTGACACTGCTGAAATGAGAGCTTCCAAAG
AACGTATTGCCGAACTGGTACGCGAGTGGGTTAAATAAAAGCTTTCTAGA
CCAT
BS12084.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:24:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3734-RB | 1422 | CG3734-PB | 1..1422 | 17..1438 | 7095 | 99.9 | Plus |
CG3734-RA | 1422 | CG3734-PA | 1..1422 | 17..1438 | 7095 | 99.9 | Plus |
CG18493-RA | 1443 | CG18493-PA | 1063..1135 | 1058..1130 | 185 | 83.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:24:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3734-RB | 1536 | CG3734-RB | 51..1472 | 17..1438 | 7095 | 99.9 | Plus |
CG3734-RA | 1619 | CG3734-RA | 134..1555 | 17..1438 | 7095 | 99.9 | Plus |
CG18493-RA | 1566 | CG18493-RA | 1078..1150 | 1058..1130 | 185 | 83.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:24:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19389343..19389633 | 1041..1331 | 1455 | 100 | Plus |
3R | 32079331 | 3R | 19388515..19388750 | 400..635 | 1180 | 100 | Plus |
3R | 32079331 | 3R | 19388811..19389043 | 635..867 | 1165 | 100 | Plus |
3R | 32079331 | 3R | 19387994..19388194 | 17..217 | 990 | 99.5 | Plus |
3R | 32079331 | 3R | 19388272..19388454 | 217..399 | 915 | 100 | Plus |
3R | 32079331 | 3R | 19389104..19389276 | 868..1040 | 865 | 100 | Plus |
3R | 32079331 | 3R | 19389694..19389802 | 1330..1438 | 545 | 100 | Plus |
3R | 32079331 | 3R | 19391644..19391716 | 1058..1130 | 185 | 83.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:24:29 has no hits.
BS12084.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:49:39 Download gff for
BS12084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3734-RA | 136..1555 | 17..1436 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:13:30 Download gff for
BS12084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3734-RA | 134..1553 | 17..1436 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:19:24 Download gff for
BS12084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3734-RA | 136..1555 | 17..1436 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:10:46 Download gff for
BS12084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3734-RA | 134..1553 | 17..1436 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:10:46 Download gff for
BS12084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19389343..19389633 | 1041..1331 | 100 | -> | Plus |
3R | 19387994..19388194 | 17..217 | 99 | -> | Plus |
3R | 19388273..19388454 | 218..399 | 100 | -> | Plus |
3R | 19388515..19388750 | 400..635 | 100 | -> | Plus |
3R | 19388812..19389043 | 636..867 | 100 | -> | Plus |
3R | 19389104..19389276 | 868..1040 | 100 | -> | Plus |
3R | 19389696..19389800 | 1332..1436 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:13:30 Download gff for
BS12084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15213995..15214176 | 218..399 | 100 | -> | Plus |
arm_3R | 15214237..15214472 | 400..635 | 100 | -> | Plus |
arm_3R | 15213716..15213916 | 17..217 | 99 | -> | Plus |
arm_3R | 15214534..15214765 | 636..867 | 100 | -> | Plus |
arm_3R | 15214826..15214998 | 868..1040 | 100 | -> | Plus |
arm_3R | 15215065..15215355 | 1041..1331 | 100 | -> | Plus |
arm_3R | 15215418..15215522 | 1332..1436 | 100 | | Plus |
BS12084.pep Sequence
Translation from 16 to 1437
> BS12084.pep
MKLWLGISLALLALGQTHGSIFERTFKRIHEEPPLPTTQNRADVVQTLWI
EQKLDHFDPEETRTWQMRYMLNDALYQSGAPLFIYLGGEWEISSGRITGG
HLYDMAKEHNALLAYTEHRYYGQSKPLPDLSNENIKYLNVNQSLADLAYF
INTIKQNHEGLSDSKVIIVGGSYSATMVTWFKKLYPDLVAGGWASSAPLL
AKVNFVEYKEITGQSIEQMGGSACYKRIENGIAEMETMIATKRGAEVKAL
LKLCEPFDVYSDLDVWTLFSEISDIFAGVVQTHNAGQIEGVCEKIMAGSN
DLIGVAGYLLDVFEESGGKCYDLSYDAITALLLDTNYNGNIMRQWIFQTC
NEYGWYQTSGSSAQPFGTKFPVTYYTTMCADLYGSEYSNEFISNQVSITN
QFFGGLFPNVENVYLTHGQLDPWRAMGIQDETQATIIPEHAHCKDFNSIS
SSDTAEMRASKERIAELVREWVK*
BS12084.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:15:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3734-PB | 473 | CG3734-PB | 1..473 | 1..473 | 2508 | 100 | Plus |
CG3734-PA | 473 | CG3734-PA | 1..473 | 1..473 | 2508 | 100 | Plus |
CG18493-PA | 480 | CG18493-PA | 34..479 | 24..472 | 1337 | 54.1 | Plus |
CG3739-PB | 485 | CG3739-PB | 18..484 | 10..473 | 948 | 41.1 | Plus |
CG9953-PA | 508 | CG9953-PA | 11..496 | 5..468 | 669 | 33.4 | Plus |