BS12091.complete Sequence
1466 bp assembled on 2006-11-01
GenBank Submission: FJ637065
> BS12091.complete
GAAGTTATCAGTCGACATGTCGAGGTTGAGCAGAGCGCTGCAGCTTACAG
ATATAGATGATTTTATTACGCCCTCACAGATATGCATTAAGCCCGTGCAA
ATAGATAAGGCAAGGTCAAAGACTGGGGCAAAGATAAAGATAAAAGGTGA
CGGCTGCTTTGAGGAATCAGAGAGTGGAAATCTAAAACTTAATAAAGTTG
ATATTTCTCTGCAAGACTGTCTTGCGTGTTCTGGTTGCATCACTTCAGCT
GAAGAAGTCCTTATCACGCAGCAGAGCCGAGAAGAGTTGCTTAAGGTCCT
TCAAGAGAATTCAAAGAATAAGGCCTCTGAAGACTGGGATAACGTGCGTA
CGATCGTGTTCACCCTTGCCACCCAGCCTATACTAAGCTTAGCCTATCGC
TATCAGATAGGTGTGGAGGATGCTGCCCGTCATCTTAATGGGTATTTTCG
CAGTTTGGGTGCCGACTATGTTTTGTCCACTAAGGTGGCGGACGATATTG
CGCTGCTCGAATGTCGTCAAGAATTTGTAGATAGGTACCGCGAAAATGAG
AACTTGACCATGCTTAGCTCCTCTTGTCCGGGGTGGGTTTGTTACGCGGA
GAAAACACACGGAAACTTCTTATTGCCTTACGTTTCCACGACCCGATCTC
CTCAGCAAATAATGGGAGTGCTTGTGAAGCAAATCCTTGCCGATAAGATG
AATGTTCCTGCGTCACGAATCTACCATGTGACCGTGATGCCTTGCTACGA
CAAGAAGCTTGAGGCCTCTCGAGAGGACTTTTTCAGCAAGGCAAATAACT
CACGCGACGTAGACTGTGTAATCACTTCAGTTGAGGTGGAACAGTTGCTT
AGTGAGGCTCAGCAGCCGCTGTCGCAGTACGATCTCCTTGATTTAGACTG
GCCATGGTCTAATGTACGCCCAGAATTCATGGTATGGGCTCACGAGAAGA
CGCTATCTGGCGGTTACGCAGAACACATATTTAAGTACGCCGCAAAACAT
ATTTTCAACGAAGATTTAAAAACAGAGTTGGAATTCAAACAGCTCAAAAA
CCGCGACTTTAGAGAAATTATACTTAAACAGAATGGCAAAACTGTCCTGA
AATTTGCAATTGCTAACGGTTTCCGGAACATACAAAACTTGGTACAAAAA
CTGAAGCGTGAAAAGGTATCAAATTACCACTTTGTTGAGGTAATGGCCTG
TCCCTCGGGCTGTATAAACGGAGGAGCACAAATACGTCCCACTACCGGAC
AGCACGTTCGCGAGCTTACCCGGAAACTGGAGGAATTATACCAGAATCTT
CCACGGTCCGAACCCGAAAACTCCTTAACAAAACATATTTACAATGACTT
TTTAGACGGCTTTCAAAGTGATAAATCATATGACGTGCTGCACACCCGTT
ACCATGATGTAGTATCTGAGCTCAGTATATCGCTTAATATAAATTGGTAA
AAGCTTTCTAGACCAT
BS12091.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:50:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17683-RA | 1434 | CG17683-PA | 1..1434 | 17..1450 | 7170 | 100 | Plus |
| CG17683-RC | 1422 | CG17683-PC | 1..1422 | 17..1450 | 6955 | 99.2 | Plus |
| CG17683-RD | 1293 | CG17683-PD | 14..1293 | 171..1450 | 6400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:50:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17683-RA | 1696 | CG17683-RA | 88..1523 | 16..1451 | 7180 | 100 | Plus |
| CG17683-RC | 1785 | CG17683-RC | 88..1511 | 16..1451 | 6965 | 99.2 | Plus |
| CG17683-RD | 2403 | CG17683-RD | 296..1576 | 171..1451 | 6405 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:50:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 4131320..4131979 | 171..830 | 3300 | 100 | Plus |
| 2R | 25286936 | 2R | 4132034..4132657 | 828..1451 | 3120 | 100 | Plus |
| 2R | 25286936 | 2R | 4131173..4131268 | 77..172 | 480 | 100 | Plus |
| 2R | 25286936 | 2R | 4131061..4131124 | 16..79 | 320 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 16:50:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tabor | 7345 | Tabor TABOR 7345bp | 2352..2448 | 250..155 | 122 | 59.8 | Minus |
BS12091.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:46:35 Download gff for
BS12091.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17683-RA | 1..1434 | 17..1450 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:21:41 Download gff for
BS12091.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17683-RA | 125..1560 | 16..1451 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:16 Download gff for
BS12091.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17683-RA | 89..1520 | 17..1448 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:46:36 Download gff for
BS12091.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17683-RA | 125..1560 | 16..1451 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:28:27 Download gff for
BS12091.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17683-RA | 89..1520 | 17..1448 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:28:27 Download gff for
BS12091.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 4131062..4131124 | 17..79 | 100 | -> | Plus |
| 2R | 4131176..4131268 | 80..172 | 100 | -> | Plus |
| 2R | 4131322..4131979 | 173..830 | 100 | -> | Plus |
| 2R | 4132037..4132654 | 831..1448 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:16 Download gff for
BS12091.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18567..18629 | 17..79 | 100 | -> | Plus |
| arm_2R | 18681..18773 | 80..172 | 100 | -> | Plus |
| arm_2R | 18827..19484 | 173..830 | 100 | -> | Plus |
| arm_2R | 19542..20159 | 831..1448 | 100 | | Plus |
BS12091.pep Sequence
Translation from 16 to 1449
> BS12091.pep
MSRLSRALQLTDIDDFITPSQICIKPVQIDKARSKTGAKIKIKGDGCFEE
SESGNLKLNKVDISLQDCLACSGCITSAEEVLITQQSREELLKVLQENSK
NKASEDWDNVRTIVFTLATQPILSLAYRYQIGVEDAARHLNGYFRSLGAD
YVLSTKVADDIALLECRQEFVDRYRENENLTMLSSSCPGWVCYAEKTHGN
FLLPYVSTTRSPQQIMGVLVKQILADKMNVPASRIYHVTVMPCYDKKLEA
SREDFFSKANNSRDVDCVITSVEVEQLLSEAQQPLSQYDLLDLDWPWSNV
RPEFMVWAHEKTLSGGYAEHIFKYAAKHIFNEDLKTELEFKQLKNRDFRE
IILKQNGKTVLKFAIANGFRNIQNLVQKLKREKVSNYHFVEVMACPSGCI
NGGAQIRPTTGQHVRELTRKLEELYQNLPRSEPENSLTKHIYNDFLDGFQ
SDKSYDVLHTRYHDVVSELSISLNINW*
BS12091.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17683-PA | 477 | CG17683-PA | 1..477 | 1..477 | 2484 | 100 | Plus |
| CG17683-PC | 473 | CG17683-PC | 1..473 | 1..477 | 2447 | 99.2 | Plus |
| CG17683-PD | 430 | CG17683-PD | 5..430 | 52..477 | 2223 | 99.8 | Plus |
| CG17683-PE | 296 | CG17683-PE | 1..296 | 182..477 | 1567 | 100 | Plus |
