Clone Sequence Records
BS12092.3prime Sequence
552 bp (552 high quality bases) assembled on 2006-06-16
> BS12092.3prime
ATGGTCTAGAAAGCTTTTAGTACTGATACGTTCCAAACACTGTACAGACG
CAAAAGAGACTGGTGTTGCTGAAGACCTCGGAGACGGAAGTGTCGCAGTC
GCAATCCCAGCAGCAGCGCGAGTTGTAAGTGGCCCCCGCACCCAGCTCCT
GGCCTAGCATCACCTGGACCACGTGCTTGTACCGCTTCACCAGGGAGCTG
CTGGCTATCTGCTGGTTCACCTCGTCGGCGATCTCACTGGTCCACTTCTT
GGCGACGTCCTTGTCATAGGTTTTGTCTTTGAGTTTCTCGGCCATAACGT
TGTTCATTATGCTCTTGATGGTGGGCAGGGGAAACATCTCCCCAAAGGCC
GGTCGCATGCTATAGGCGGTGGGCTGGTCGCCGGGCTTTTCCGACTTTTC
TTGATTTTCCAAACCATCGGCTGAGCCGGAGTGCAGACTTCCTGACGCCG
ACTTTTCCGACTTCCTATCCGCTGGGTTGGGCACTGTTAAAGTCTGGACG
GATTTGGTTGTTTCCTCAGTGGACTGTTTGTCAGCCATCTCGACTGATAA
CT
BS12092.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:17:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5359-PA | 522 | CG5359-RA | 1..522 | 538..17 | 2610 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:44:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5359-RC | 1241 | CG5359-RC | 74..599 | 540..15 | 2630 | 100 | Minus |
CG5359-RB | 713 | CG5359-RB | 74..599 | 540..15 | 2630 | 100 | Minus |
CG5359-RA | 1244 | CG5359-RA | 74..599 | 540..15 | 2630 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:44:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10000620..10000884 | 15..279 | 1325 | 100 | Plus |
3R | 32079331 | 3R | 10000940..10001203 | 277..540 | 1320 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:44:02 has no hits.
BS12092.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:53 Download gff for
BS12092.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5359-PA | 1..522 | 17..538 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:47:51 Download gff for
BS12092.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5359-RA | 70..607 | 9..546 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:22:35 Download gff for
BS12092.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5359-RA | 70..607 | 9..546 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:22:35 Download gff for
BS12092.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10000612..10000881 | 9..276 | 98 | <- | Plus |
3R | 10000940..10001207 | 277..546 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:47:51 Download gff for
BS12092.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5826334..5826603 | 9..276 | 98 | <- | Plus |
arm_3R | 5826662..5826929 | 277..546 | 98 | | Plus |
BS12092.5prime Sequence
552 bp (552 high quality bases) assembled on 2006-06-16
> BS12092.5prime
GAAGTTATCAGTCGAGATGGCTGACAAACAGTCCACTGAGGAAACAACCA
AATCCGTCCAGACTTTAACAGTGCCCAACCCAGCGGATAGGAAGTCGGAA
AAGTCGGCGTCAGGAAGTCTGCACTCCGGCTCAGCCGATGGTTTGGAAAA
TCAAGAAAAGTCGGAAAAGCCCGGCGACCAGCCCACCGCCTATAGCATGC
GACCGGCCTTTGGGGAGATGTTTCCCCTGCCCACCATCAAGAGCATAATG
AACAACGTTATGGCCGAGAAACTCAAAGACAAAACCTATGACAAGGACGT
CGCCAAGAAGTGGACCAGTGAGATCGCCGACGAGGTGAACCAGCAGATAG
CCAGCAGCTCCCTGGTGAAGCGGTACAAGCACGTGGTCCAGGTGATGCTA
GGCCAGGAGCTGGGTGCGGGGGCCACTTACAACTCGCGCTGCTGCTGGGA
TTGCGACTGCGACACTTCCGTCTCCGAGGTCTTCAGCAACACCAGTCTCT
TTTGCGTCTGTACAGTGTTTGGAACGTATCAGTACTAAAAGCTTTCTAGA
CC
BS12092.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:17:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5359-PA | 522 | CG5359-RA | 1..522 | 17..538 | 2610 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:46:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5359-RC | 1241 | CG5359-RC | 74..599 | 15..540 | 2630 | 100 | Plus |
CG5359-RB | 713 | CG5359-RB | 74..599 | 15..540 | 2630 | 100 | Plus |
CG5359-RA | 1244 | CG5359-RA | 74..599 | 15..540 | 2630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:46:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10000620..10000884 | 540..276 | 1325 | 100 | Minus |
3R | 32079331 | 3R | 10000940..10001203 | 278..15 | 1320 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:46:31 has no hits.
BS12092.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:53 Download gff for
BS12092.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5359-PA | 1..522 | 17..538 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 22:44:58 Download gff for
BS12092.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5359-RA | 70..607 | 9..546 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:52:38 Download gff for
BS12092.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5359-RA | 70..607 | 9..546 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:52:38 Download gff for
BS12092.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10000612..10000881 | 279..546 | 98 | <- | Minus |
3R | 10000940..10001207 | 9..278 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 22:44:58 Download gff for
BS12092.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5826334..5826603 | 279..546 | 98 | <- | Minus |
arm_3R | 5826662..5826929 | 9..278 | 98 | | Minus |
BS12092.complete Sequence
554 bp assembled on 2008-08-15
GenBank Submission: FJ637066
> BS12092.complete
GAAGTTATCAGTCGAGATGGCTGACAAACAGTCCACTGAGGAAACAACCA
AATCCGTCCAGACTTTAACAGTGCCCAACCCAGCGGATAGGAAGTCGGAA
AAGTCGGCGTCAGGAAGTCTGCACTCCGGCTCAGCCGATGGTTTGGAAAA
TCAAGAAAAGTCGGAAAAGCCCGGCGACCAGCCCACCGCCTATAGCATGC
GACCGGCCTTTGGGGAGATGTTTCCCCTGCCCACCATCAAGAGCATAATG
AACAACGTTATGGCCGAGAAACTCAAAGACAAAACCTATGACAAGGACGT
CGCCAAGAAGTGGACCAGTGAGATCGCCGACGAGGTGAACCAGCAGATAG
CCAGCAGCTCCCTGGTGAAGCGGTACAAGCACGTGGTCCAGGTGATGCTA
GGCCAGGAGCTGGGTGCGGGGGCCACTTACAACTCGCGCTGCTGCTGGGA
TTGCGACTGCGACACTTCCGTCTCCGAGGTCTTCAGCAACACCAGTCTCT
TTTGCGTCTGTACAGTGTTTGGAACGTATCAGTACTAAAAGCTTTCTAGA
CCAT
BS12092.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:38:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5359-RC | 522 | CG5359-PC | 1..522 | 17..538 | 2610 | 100 | Plus |
CG5359-RB | 522 | CG5359-PB | 1..522 | 17..538 | 2610 | 100 | Plus |
CG5359-RA | 522 | CG5359-PA | 1..522 | 17..538 | 2610 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:38:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5359-RC | 1241 | CG5359-RC | 74..599 | 15..540 | 2630 | 100 | Plus |
CG5359-RB | 713 | CG5359-RB | 74..599 | 15..540 | 2630 | 100 | Plus |
CG5359-RA | 1244 | CG5359-RA | 74..599 | 15..540 | 2630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:38:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10000620..10000884 | 540..276 | 1325 | 100 | Minus |
3R | 32079331 | 3R | 10000940..10001203 | 278..15 | 1320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:38:28 has no hits.
BS12092.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:54:31 Download gff for
BS12092.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5359-RA | 69..606 | 9..546 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:35 Download gff for
BS12092.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5359-RA | 76..595 | 17..536 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:56:11 Download gff for
BS12092.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5359-RA | 75..594 | 17..536 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:05:25 Download gff for
BS12092.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5359-RA | 76..595 | 17..536 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:05:25 Download gff for
BS12092.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10000624..10000881 | 279..536 | 100 | <- | Minus |
3R | 10000940..10001201 | 17..278 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:35 Download gff for
BS12092.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5826346..5826603 | 279..536 | 100 | <- | Minus |
arm_3R | 5826662..5826923 | 17..278 | 100 | | Minus |
BS12092.pep Sequence
Translation from 16 to 537
> BS12092.pep
MADKQSTEETTKSVQTLTVPNPADRKSEKSASGSLHSGSADGLENQEKSE
KPGDQPTAYSMRPAFGEMFPLPTIKSIMNNVMAEKLKDKTYDKDVAKKWT
SEIADEVNQQIASSSLVKRYKHVVQVMLGQELGAGATYNSRCCWDCDCDT
SVSEVFSNTSLFCVCTVFGTYQY*
BS12092.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:42:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5359-PC | 173 | CG5359-PC | 1..173 | 1..173 | 907 | 100 | Plus |
CG5359-PB | 173 | CG5359-PB | 1..173 | 1..173 | 907 | 100 | Plus |
CG5359-PA | 173 | CG5359-PA | 1..173 | 1..173 | 907 | 100 | Plus |
CG7276-PB | 171 | CG7276-PB | 2..171 | 10..173 | 285 | 39.4 | Plus |