Clone BS12092 Report

Search the DGRC for BS12092

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:120
Well:92
Vector:pDNR-Dual
Associated Gene/TranscriptCG5359-RA
Protein status:BS12092.pep: full length peptide match
Sequenced Size:554

Clone Sequence Records

BS12092.3prime Sequence

552 bp (552 high quality bases) assembled on 2006-06-16

> BS12092.3prime
ATGGTCTAGAAAGCTTTTAGTACTGATACGTTCCAAACACTGTACAGACG
CAAAAGAGACTGGTGTTGCTGAAGACCTCGGAGACGGAAGTGTCGCAGTC
GCAATCCCAGCAGCAGCGCGAGTTGTAAGTGGCCCCCGCACCCAGCTCCT
GGCCTAGCATCACCTGGACCACGTGCTTGTACCGCTTCACCAGGGAGCTG
CTGGCTATCTGCTGGTTCACCTCGTCGGCGATCTCACTGGTCCACTTCTT
GGCGACGTCCTTGTCATAGGTTTTGTCTTTGAGTTTCTCGGCCATAACGT
TGTTCATTATGCTCTTGATGGTGGGCAGGGGAAACATCTCCCCAAAGGCC
GGTCGCATGCTATAGGCGGTGGGCTGGTCGCCGGGCTTTTCCGACTTTTC
TTGATTTTCCAAACCATCGGCTGAGCCGGAGTGCAGACTTCCTGACGCCG
ACTTTTCCGACTTCCTATCCGCTGGGTTGGGCACTGTTAAAGTCTGGACG
GATTTGGTTGTTTCCTCAGTGGACTGTTTGTCAGCCATCTCGACTGATAA
CT

BS12092.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:17:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG5359-PA 522 CG5359-RA 1..522 538..17 2610 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:44:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG5359-RC 1241 CG5359-RC 74..599 540..15 2630 100 Minus
CG5359-RB 713 CG5359-RB 74..599 540..15 2630 100 Minus
CG5359-RA 1244 CG5359-RA 74..599 540..15 2630 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:44:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10000620..10000884 15..279 1325 100 Plus
3R 32079331 3R 10000940..10001203 277..540 1320 100 Plus
Blast to na_te.dros performed on 2015-02-13 12:44:02 has no hits.

BS12092.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:53 Download gff for BS12092.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5359-PA 1..522 17..538 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:47:51 Download gff for BS12092.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5359-RA 70..607 9..546 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:22:35 Download gff for BS12092.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5359-RA 70..607 9..546 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:22:35 Download gff for BS12092.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 10000612..10000881 9..276 98 <- Plus
3R 10000940..10001207 277..546 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:47:51 Download gff for BS12092.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5826334..5826603 9..276 98 <- Plus
arm_3R 5826662..5826929 277..546 98   Plus

BS12092.5prime Sequence

552 bp (552 high quality bases) assembled on 2006-06-16

> BS12092.5prime
GAAGTTATCAGTCGAGATGGCTGACAAACAGTCCACTGAGGAAACAACCA
AATCCGTCCAGACTTTAACAGTGCCCAACCCAGCGGATAGGAAGTCGGAA
AAGTCGGCGTCAGGAAGTCTGCACTCCGGCTCAGCCGATGGTTTGGAAAA
TCAAGAAAAGTCGGAAAAGCCCGGCGACCAGCCCACCGCCTATAGCATGC
GACCGGCCTTTGGGGAGATGTTTCCCCTGCCCACCATCAAGAGCATAATG
AACAACGTTATGGCCGAGAAACTCAAAGACAAAACCTATGACAAGGACGT
CGCCAAGAAGTGGACCAGTGAGATCGCCGACGAGGTGAACCAGCAGATAG
CCAGCAGCTCCCTGGTGAAGCGGTACAAGCACGTGGTCCAGGTGATGCTA
GGCCAGGAGCTGGGTGCGGGGGCCACTTACAACTCGCGCTGCTGCTGGGA
TTGCGACTGCGACACTTCCGTCTCCGAGGTCTTCAGCAACACCAGTCTCT
TTTGCGTCTGTACAGTGTTTGGAACGTATCAGTACTAAAAGCTTTCTAGA
CC

BS12092.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:17:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG5359-PA 522 CG5359-RA 1..522 17..538 2610 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:46:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG5359-RC 1241 CG5359-RC 74..599 15..540 2630 100 Plus
CG5359-RB 713 CG5359-RB 74..599 15..540 2630 100 Plus
CG5359-RA 1244 CG5359-RA 74..599 15..540 2630 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:46:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10000620..10000884 540..276 1325 100 Minus
3R 32079331 3R 10000940..10001203 278..15 1320 100 Minus
Blast to na_te.dros performed on 2015-02-13 00:46:31 has no hits.

BS12092.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:53 Download gff for BS12092.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5359-PA 1..522 17..538 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 22:44:58 Download gff for BS12092.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5359-RA 70..607 9..546 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:52:38 Download gff for BS12092.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5359-RA 70..607 9..546 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:52:38 Download gff for BS12092.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 10000612..10000881 279..546 98 <- Minus
3R 10000940..10001207 9..278 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 22:44:58 Download gff for BS12092.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5826334..5826603 279..546 98 <- Minus
arm_3R 5826662..5826929 9..278 98   Minus

BS12092.complete Sequence

554 bp assembled on 2008-08-15

GenBank Submission: FJ637066

> BS12092.complete
GAAGTTATCAGTCGAGATGGCTGACAAACAGTCCACTGAGGAAACAACCA
AATCCGTCCAGACTTTAACAGTGCCCAACCCAGCGGATAGGAAGTCGGAA
AAGTCGGCGTCAGGAAGTCTGCACTCCGGCTCAGCCGATGGTTTGGAAAA
TCAAGAAAAGTCGGAAAAGCCCGGCGACCAGCCCACCGCCTATAGCATGC
GACCGGCCTTTGGGGAGATGTTTCCCCTGCCCACCATCAAGAGCATAATG
AACAACGTTATGGCCGAGAAACTCAAAGACAAAACCTATGACAAGGACGT
CGCCAAGAAGTGGACCAGTGAGATCGCCGACGAGGTGAACCAGCAGATAG
CCAGCAGCTCCCTGGTGAAGCGGTACAAGCACGTGGTCCAGGTGATGCTA
GGCCAGGAGCTGGGTGCGGGGGCCACTTACAACTCGCGCTGCTGCTGGGA
TTGCGACTGCGACACTTCCGTCTCCGAGGTCTTCAGCAACACCAGTCTCT
TTTGCGTCTGTACAGTGTTTGGAACGTATCAGTACTAAAAGCTTTCTAGA
CCAT

BS12092.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:38:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG5359-RC 522 CG5359-PC 1..522 17..538 2610 100 Plus
CG5359-RB 522 CG5359-PB 1..522 17..538 2610 100 Plus
CG5359-RA 522 CG5359-PA 1..522 17..538 2610 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:38:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG5359-RC 1241 CG5359-RC 74..599 15..540 2630 100 Plus
CG5359-RB 713 CG5359-RB 74..599 15..540 2630 100 Plus
CG5359-RA 1244 CG5359-RA 74..599 15..540 2630 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:38:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10000620..10000884 540..276 1325 100 Minus
3R 32079331 3R 10000940..10001203 278..15 1320 100 Minus
Blast to na_te.dros performed on 2014-11-27 19:38:28 has no hits.

BS12092.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:54:31 Download gff for BS12092.complete
Subject Subject Range Query Range Percent Splice Strand
CG5359-RA 69..606 9..546 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:35 Download gff for BS12092.complete
Subject Subject Range Query Range Percent Splice Strand
CG5359-RA 76..595 17..536 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:56:11 Download gff for BS12092.complete
Subject Subject Range Query Range Percent Splice Strand
CG5359-RA 75..594 17..536 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:05:25 Download gff for BS12092.complete
Subject Subject Range Query Range Percent Splice Strand
CG5359-RA 76..595 17..536 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:05:25 Download gff for BS12092.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10000624..10000881 279..536 100 <- Minus
3R 10000940..10001201 17..278 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:35 Download gff for BS12092.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5826346..5826603 279..536 100 <- Minus
arm_3R 5826662..5826923 17..278 100   Minus

BS12092.pep Sequence

Translation from 16 to 537

> BS12092.pep
MADKQSTEETTKSVQTLTVPNPADRKSEKSASGSLHSGSADGLENQEKSE
KPGDQPTAYSMRPAFGEMFPLPTIKSIMNNVMAEKLKDKTYDKDVAKKWT
SEIADEVNQQIASSSLVKRYKHVVQVMLGQELGAGATYNSRCCWDCDCDT
SVSEVFSNTSLFCVCTVFGTYQY*

BS12092.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:42:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG5359-PC 173 CG5359-PC 1..173 1..173 907 100 Plus
CG5359-PB 173 CG5359-PB 1..173 1..173 907 100 Plus
CG5359-PA 173 CG5359-PA 1..173 1..173 907 100 Plus
CG7276-PB 171 CG7276-PB 2..171 10..173 285 39.4 Plus