Clone BS12093 Report

Search the DGRC for BS12093

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:120
Well:93
Vector:pDNR-Dual
Associated Gene/TranscriptCG7785-RA
Protein status:BS12093.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12093.3prime Sequence

777 bp (759 high quality bases) assembled on 2006-06-16

> BS12093.3prime
ATGGTCTAGAAAGCTTCTAAAGAAGTGACTGTTCCAATAGAATGCGTTCG
AATCCTGGTGGTGGTCCGTGTGAAAAATTATCCAAGATAATGTCCAGAAT
GGCGCCATTGCCCACATAAATGACGGGAAATAGTGCTGCTCCTCGTACAT
TTCGAAATGGAACCTCCAGATTCTTTCCATTGAAGTAGAAATTCAGCTCC
ACGTGGTCAAAGGCGACGCCCACAATGTCTCCTTCATCGGGAAAATCTCG
CTGTGGCGATGCTATCAACGAATCACCGATATCCACATCGGATGATGCCA
CTCCAGTGGTCATCAGCAGATCTTCCTGCTGCAAATCCTCGATGGCAATG
AGTCCGGCCGCTTTGGCAGCGCTATTGTTCAGGATACCATTGCTCGTCCT
CGCTGGCTGAGTGGTGCAAGCAGACTGCACCACTGGTCGGAACTCCTCGC
GGTCATTGTGGCGTGTGGCATTATCGGAGCACAGGCACCAGGACTCTCGA
TCCCCGCCGCCGCTCTTGCGACTGAGATCCGTTTGACGCGTTGCCAAGCC
CACCGACCAGCTGCCGCCGTGCTGGATCTTCACCTCGAAGTAGGACTTCG
ATTGGACCAAAGGCGCCGTGGCCAGGACGCCGCCAGTGCCCGTTACGCGC
AGTTGGTGTGACAGCAGGATTACATCAGGTCCCATATGCGCTGCATCCAG
GTGAACATCGGGCTCCCGCAAGCGACTGGTTGCCGTCGGTTTCCTTATGT
GTCCACCATTGAAACAGGTGCGTAGGC

BS12093.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:27:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG7785-PA 771 CG7785-RA 11..771 777..17 3755 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:05:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG7785-RA 1747 CG7785-RA 125..886 777..16 3780 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:05:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18022105..18022672 682..115 2840 100 Minus
3R 32079331 3R 18022729..18022828 115..16 500 100 Minus
3R 32079331 3R 18021724..18021820 777..681 455 97.9 Minus
Blast to na_te.dros performed on 2015-02-12 11:05:46 has no hits.

BS12093.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:54 Download gff for BS12093.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7785-PA 11..771 17..777 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:44:06 Download gff for BS12093.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7785-RA 125..886 16..777 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:20:49 Download gff for BS12093.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7785-RA 125..886 16..777 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:20:49 Download gff for BS12093.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 18022730..18022828 16..114 100   Minus
3R 18021724..18021819 682..777 97 -> Minus
3R 18022106..18022672 115..681 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:44:06 Download gff for BS12093.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13847446..13847541 682..777 97 -> Minus
arm_3R 13847828..13848394 115..681 100 -> Minus
arm_3R 13848452..13848550 16..114 100   Minus

BS12093.complete Sequence

803 bp assembled on 2006-11-01

GenBank Submission: FJ637067

> BS12093.complete
GAAGTTATCAGTCGACATGTTCTGCTGCCTACGCACCTGTCTCAATGGTG
GACACATAAGGAAACCGACGGCAACCAGTCGCCTGCGGGAGCCCGATGTT
CACCTGGATGCAGCGCATATGGGACCTGATGTAATCCTGCTGTCACACCA
ACTGCGCGTAACGGGCACTGGCGGCGTCCTGGCCACGGCGCCTTTGGTCC
AATCGAAGTCCTACTTCGAGGTGAAGATCCAGCACGGCGGCAGCTGGTCG
GTGGGCTTGGCAACGCGTCAAACGGATCTCAGTCGCAAGAGCGGCGGCGG
GGATCGAGAGTCCTGGTGCCTGTGCTCCGATAATGCCACACGCCACAATG
ACCGCGAGGAGTTCCGACCAGTGGTGCAGTCTGCTTGCACCACTCAGCCA
GCGAGGACGAGCAATGGTATCCTGAACAATAGCGCTGCCAAAGCGGCCGG
ACTCATTGCCATCGAGGATTTGCAGCAGGAAGATCTGCTGATGACCACTG
GAGTGGCATCATCCGATGTGGATATCGGTGATTCGTTGATAGCATCGCCA
CAGCGAGATTTTCCCGATGAAGGAGACATTGTGGGCGTCGCCTTTGACCA
CGTGGAGCTGAATTTCTACTTCAATGGAAAGAATCTGGAGGTTCCATTTC
GAAATGTACGAGGAGCAGCACTATTTCCCGTCATTTATGTGGGCAATGGC
GCCATTCTGGACATTATCTTGGATAATTTTTCACACGGACCACCACCAGG
ATTCGAACGCATTCTATTGGAACAGTCACTTCTTTAGAAGCTTTCTAGAC
CAT

BS12093.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:33:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG7785-RA 771 CG7785-PA 1..771 17..787 3855 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:33:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG7785-RA 1747 CG7785-RA 115..886 17..788 3860 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:33:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18022105..18022672 122..689 2840 100 Plus
3R 32079331 3R 18021714..18021820 17..123 535 100 Plus
3R 32079331 3R 18022729..18022828 689..788 500 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:33:48 has no hits.

BS12093.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:46:37 Download gff for BS12093.complete
Subject Subject Range Query Range Percent Splice Strand
CG7785-RA 1..771 17..787 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:21:42 Download gff for BS12093.complete
Subject Subject Range Query Range Percent Splice Strand
CG7785-RA 108..881 14..788 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:04:06 Download gff for BS12093.complete
Subject Subject Range Query Range Percent Splice Strand
CG7785-RA 120..885 22..787 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:46:37 Download gff for BS12093.complete
Subject Subject Range Query Range Percent Splice Strand
CG7785-RA 108..881 14..788 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:22:07 Download gff for BS12093.complete
Subject Subject Range Query Range Percent Splice Strand
CG7785-RA 120..885 22..787 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:22:07 Download gff for BS12093.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18021719..18021819 22..122 100 -> Plus
3R 18022106..18022672 123..689 100 -> Plus
3R 18022730..18022827 690..787 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:04:06 Download gff for BS12093.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13847441..13847541 22..122 100 -> Plus
arm_3R 13847828..13848394 123..689 100 -> Plus
arm_3R 13848452..13848549 690..787 100   Plus

BS12093.pep Sequence

Translation from 16 to 786

> BS12093.pep
MFCCLRTCLNGGHIRKPTATSRLREPDVHLDAAHMGPDVILLSHQLRVTG
TGGVLATAPLVQSKSYFEVKIQHGGSWSVGLATRQTDLSRKSGGGDRESW
CLCSDNATRHNDREEFRPVVQSACTTQPARTSNGILNNSAAKAAGLIAIE
DLQQEDLLMTTGVASSDVDIGDSLIASPQRDFPDEGDIVGVAFDHVELNF
YFNGKNLEVPFRNVRGAALFPVIYVGNGAILDIILDNFSHGPPPGFERIL
LEQSLL*

BS12093.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG7785-PA 256 CG7785-PA 1..256 1..256 1339 100 Plus