Clone Sequence Records
BS12093.3prime Sequence
777 bp (759 high quality bases) assembled on 2006-06-16
> BS12093.3prime
ATGGTCTAGAAAGCTTCTAAAGAAGTGACTGTTCCAATAGAATGCGTTCG
AATCCTGGTGGTGGTCCGTGTGAAAAATTATCCAAGATAATGTCCAGAAT
GGCGCCATTGCCCACATAAATGACGGGAAATAGTGCTGCTCCTCGTACAT
TTCGAAATGGAACCTCCAGATTCTTTCCATTGAAGTAGAAATTCAGCTCC
ACGTGGTCAAAGGCGACGCCCACAATGTCTCCTTCATCGGGAAAATCTCG
CTGTGGCGATGCTATCAACGAATCACCGATATCCACATCGGATGATGCCA
CTCCAGTGGTCATCAGCAGATCTTCCTGCTGCAAATCCTCGATGGCAATG
AGTCCGGCCGCTTTGGCAGCGCTATTGTTCAGGATACCATTGCTCGTCCT
CGCTGGCTGAGTGGTGCAAGCAGACTGCACCACTGGTCGGAACTCCTCGC
GGTCATTGTGGCGTGTGGCATTATCGGAGCACAGGCACCAGGACTCTCGA
TCCCCGCCGCCGCTCTTGCGACTGAGATCCGTTTGACGCGTTGCCAAGCC
CACCGACCAGCTGCCGCCGTGCTGGATCTTCACCTCGAAGTAGGACTTCG
ATTGGACCAAAGGCGCCGTGGCCAGGACGCCGCCAGTGCCCGTTACGCGC
AGTTGGTGTGACAGCAGGATTACATCAGGTCCCATATGCGCTGCATCCAG
GTGAACATCGGGCTCCCGCAAGCGACTGGTTGCCGTCGGTTTCCTTATGT
GTCCACCATTGAAACAGGTGCGTAGGC
BS12093.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:27:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7785-PA | 771 | CG7785-RA | 11..771 | 777..17 | 3755 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:05:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7785-RA | 1747 | CG7785-RA | 125..886 | 777..16 | 3780 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:05:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18022105..18022672 | 682..115 | 2840 | 100 | Minus |
3R | 32079331 | 3R | 18022729..18022828 | 115..16 | 500 | 100 | Minus |
3R | 32079331 | 3R | 18021724..18021820 | 777..681 | 455 | 97.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:05:46 has no hits.
BS12093.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:54 Download gff for
BS12093.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7785-PA | 11..771 | 17..777 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:44:06 Download gff for
BS12093.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7785-RA | 125..886 | 16..777 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:20:49 Download gff for
BS12093.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7785-RA | 125..886 | 16..777 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:20:49 Download gff for
BS12093.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18022730..18022828 | 16..114 | 100 | | Minus |
3R | 18021724..18021819 | 682..777 | 97 | -> | Minus |
3R | 18022106..18022672 | 115..681 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:44:06 Download gff for
BS12093.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13847446..13847541 | 682..777 | 97 | -> | Minus |
arm_3R | 13847828..13848394 | 115..681 | 100 | -> | Minus |
arm_3R | 13848452..13848550 | 16..114 | 100 | | Minus |
BS12093.complete Sequence
803 bp assembled on 2006-11-01
GenBank Submission: FJ637067
> BS12093.complete
GAAGTTATCAGTCGACATGTTCTGCTGCCTACGCACCTGTCTCAATGGTG
GACACATAAGGAAACCGACGGCAACCAGTCGCCTGCGGGAGCCCGATGTT
CACCTGGATGCAGCGCATATGGGACCTGATGTAATCCTGCTGTCACACCA
ACTGCGCGTAACGGGCACTGGCGGCGTCCTGGCCACGGCGCCTTTGGTCC
AATCGAAGTCCTACTTCGAGGTGAAGATCCAGCACGGCGGCAGCTGGTCG
GTGGGCTTGGCAACGCGTCAAACGGATCTCAGTCGCAAGAGCGGCGGCGG
GGATCGAGAGTCCTGGTGCCTGTGCTCCGATAATGCCACACGCCACAATG
ACCGCGAGGAGTTCCGACCAGTGGTGCAGTCTGCTTGCACCACTCAGCCA
GCGAGGACGAGCAATGGTATCCTGAACAATAGCGCTGCCAAAGCGGCCGG
ACTCATTGCCATCGAGGATTTGCAGCAGGAAGATCTGCTGATGACCACTG
GAGTGGCATCATCCGATGTGGATATCGGTGATTCGTTGATAGCATCGCCA
CAGCGAGATTTTCCCGATGAAGGAGACATTGTGGGCGTCGCCTTTGACCA
CGTGGAGCTGAATTTCTACTTCAATGGAAAGAATCTGGAGGTTCCATTTC
GAAATGTACGAGGAGCAGCACTATTTCCCGTCATTTATGTGGGCAATGGC
GCCATTCTGGACATTATCTTGGATAATTTTTCACACGGACCACCACCAGG
ATTCGAACGCATTCTATTGGAACAGTCACTTCTTTAGAAGCTTTCTAGAC
CAT
BS12093.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:33:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7785-RA | 771 | CG7785-PA | 1..771 | 17..787 | 3855 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:33:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7785-RA | 1747 | CG7785-RA | 115..886 | 17..788 | 3860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:33:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18022105..18022672 | 122..689 | 2840 | 100 | Plus |
3R | 32079331 | 3R | 18021714..18021820 | 17..123 | 535 | 100 | Plus |
3R | 32079331 | 3R | 18022729..18022828 | 689..788 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:33:48 has no hits.
BS12093.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:46:37 Download gff for
BS12093.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7785-RA | 1..771 | 17..787 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:21:42 Download gff for
BS12093.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7785-RA | 108..881 | 14..788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:04:06 Download gff for
BS12093.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7785-RA | 120..885 | 22..787 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:46:37 Download gff for
BS12093.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7785-RA | 108..881 | 14..788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:22:07 Download gff for
BS12093.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7785-RA | 120..885 | 22..787 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:22:07 Download gff for
BS12093.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18021719..18021819 | 22..122 | 100 | -> | Plus |
3R | 18022106..18022672 | 123..689 | 100 | -> | Plus |
3R | 18022730..18022827 | 690..787 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:04:06 Download gff for
BS12093.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13847441..13847541 | 22..122 | 100 | -> | Plus |
arm_3R | 13847828..13848394 | 123..689 | 100 | -> | Plus |
arm_3R | 13848452..13848549 | 690..787 | 100 | | Plus |
BS12093.pep Sequence
Translation from 16 to 786
> BS12093.pep
MFCCLRTCLNGGHIRKPTATSRLREPDVHLDAAHMGPDVILLSHQLRVTG
TGGVLATAPLVQSKSYFEVKIQHGGSWSVGLATRQTDLSRKSGGGDRESW
CLCSDNATRHNDREEFRPVVQSACTTQPARTSNGILNNSAAKAAGLIAIE
DLQQEDLLMTTGVASSDVDIGDSLIASPQRDFPDEGDIVGVAFDHVELNF
YFNGKNLEVPFRNVRGAALFPVIYVGNGAILDIILDNFSHGPPPGFERIL
LEQSLL*
BS12093.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7785-PA | 256 | CG7785-PA | 1..256 | 1..256 | 1339 | 100 | Plus |