Clone Sequence Records
BS12095.3prime Sequence
801 bp (750 high quality bases) assembled on 2006-06-16
> BS12095.3prime
ATGGTCTAGAAAGCTTTTAGATGCTGTTAGCAGTGCTCACCACCCAAGAG
CGGAGGACAGCAACATCGGCATAGACACCGGGGTAGTTGGAGTAAGCGCA
TCCGTATCCCCAGGAGACAACACCGACGAGGACTCCGCCGGAGACCAGTG
GGCCACCGGAGTCACCCTGGCAGGCATCCTTGCCGCTGGCAGCAGCGCAG
ATCATGGTGTTGCGGATCTGGCTACCGTATCCGTAGGTGGAGGAAGCACA
CTGGCTCTGGCTAACGATGTTCACGTTCACGTACTGCAGCTGGGAGGGGA
TGGAGCTGGATCCGGACGACTGGGTACCCCAACCGGAAACGGCGGCAGAG
GCTCCGTTAGCTGGGTTGTAAGTGGCCAGGCTAATAGCCTTGATGCTTGA
GCTGAAGCTCAGGGAAGAGCTCAGACGGATGACAGCGATGTCGTTGACCA
TGGTGTTAGCGTTGTATCCCTCGTGGTTCTTGAAAGAGGAAACCTTGGCG
ACGACGCCACCAGAGCTCCAGTAGGTGGATCCAGCACGGACCTGCAGGAC
TGAAGCGGACACGGACTGCAGACAGTGAGCGGCGGTCACAATGATGTTGG
CAGAGTAGATGGATCCACCGCAGGAGTGGCTGCCACTGCGCTGCAGGGAG
ATCTGCCAGGGGAAGCTGCTGATGGTGGTAGCAGAGCCGCCGACAATGCG
GCCATCCAACTGAGGCAGGAGTCCCTCAGGGACGGTGCCTCCCAGGGCGC
AGACCCCGGCGGACAAGAGGATCACGATCTTCACCATGTCGACTGATAAC
T
BS12095.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:27:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18444-PA | 771 | alphaTry-RA | 5..771 | 783..17 | 3810 | 99.8 | Minus |
CG30025-PA | 762 | CG30025-RA | 474..747 | 314..41 | 1295 | 98.9 | Minus |
CG12351-PA | 762 | deltaTry-RA | 474..746 | 314..42 | 1290 | 98.9 | Minus |
CG30031-PA | 762 | CG30031-RA | 474..746 | 314..42 | 1290 | 98.9 | Minus |
CG30028-PA | 762 | gammaTry-RA | 474..746 | 314..42 | 1290 | 98.9 | Minus |
CG30025-PA | 762 | CG30025-RA | 36..185 | 752..603 | 725 | 99.3 | Minus |
CG12351-PA | 762 | deltaTry-RA | 36..185 | 752..603 | 725 | 99.3 | Minus |
CG30031-PA | 762 | CG30031-RA | 36..185 | 752..603 | 725 | 99.3 | Minus |
CG30028-PA | 762 | gammaTry-RA | 36..185 | 752..603 | 725 | 99.3 | Minus |
CG18211-PA | 762 | betaTry-RA | 36..185 | 752..603 | 600 | 96 | Minus |
CG18211-PA | 762 | betaTry-RA | 240..401 | 548..387 | 485 | 91.9 | Minus |
CG18211-PA | 762 | betaTry-RA | 616..689 | 172..99 | 370 | 100 | Minus |
CG30025-PA | 762 | CG30025-RA | 199..275 | 589..513 | 310 | 96.1 | Minus |
CG12351-PA | 762 | deltaTry-RA | 199..275 | 589..513 | 310 | 96.1 | Minus |
CG30031-PA | 762 | CG30031-RA | 199..275 | 589..513 | 310 | 96.1 | Minus |
CG30028-PA | 762 | gammaTry-RA | 199..275 | 589..513 | 310 | 96.1 | Minus |
CG18681-PA | 771 | epsilonTry-RA | 606..650 | 182..138 | 200 | 97.7 | Minus |
CG30025-PA | 762 | CG30025-RA | 298..350 | 490..438 | 190 | 94.3 | Minus |
CG12351-PA | 762 | deltaTry-RA | 298..350 | 490..438 | 190 | 94.3 | Minus |
CG30031-PA | 762 | CG30031-RA | 298..350 | 490..438 | 190 | 94.3 | Minus |
CG30028-PA | 762 | gammaTry-RA | 298..350 | 490..438 | 190 | 94.3 | Minus |
CG18211-PA | 762 | betaTry-RA | 700..747 | 88..41 | 190 | 95.8 | Minus |
CG18211-PA | 762 | betaTry-RA | 199..233 | 589..555 | 150 | 97.1 | Minus |
CG7754-PA | 759 | iotaTry-RA | 687..713 | 89..63 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:52:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alphaTry-RA | 860 | CG18444-RA | 27..798 | 788..17 | 3830 | 99.7 | Minus |
CG30025-RA | 810 | CG30025-RA | 14..761 | 788..41 | 2630 | 90.1 | Minus |
gammaTry-RA | 810 | CG30028-RA | 15..761 | 788..42 | 2625 | 90.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:52:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11344322..11345093 | 17..788 | 3830 | 99.7 | Plus |
2R | 25286936 | 2R | 11353613..11354360 | 41..788 | 2630 | 90.1 | Plus |
2R | 25286936 | 2R | 11349110..11349856 | 42..788 | 2625 | 90.1 | Plus |
2R | 25286936 | 2R | 11350826..11351572 | 788..42 | 2625 | 90.1 | Minus |
2R | 25286936 | 2R | 11355332..11356078 | 788..42 | 2625 | 90.1 | Minus |
2R | 25286936 | 2R | 11346341..11347088 | 788..41 | 2375 | 87.8 | Minus |
2R | 25286936 | 2R | 11345320..11345442 | 60..182 | 300 | 82.9 | Plus |
2R | 25286936 | 2R | 11345694..11346012 | 434..752 | 245 | 71.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:52:34 has no hits.
BS12095.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:55 Download gff for
BS12095.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18444-PA | 1..771 | 17..787 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:31:13 Download gff for
BS12095.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alphaTry-RA | 27..801 | 12..788 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:44:52 Download gff for
BS12095.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alphaTry-RA | 27..801 | 12..788 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:44:52 Download gff for
BS12095.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11344319..11345093 | 12..788 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:31:13 Download gff for
BS12095.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7231824..7232598 | 12..788 | 99 | | Plus |
BS12095.5prime Sequence
780 bp (750 high quality bases) assembled on 2006-06-16
> BS12095.5prime
GAAGTTATCAGTCGACATGTTGAAGATCGTGATCCTCTTGTCCGCCGTGG
TCTGCGCCCTGGGAGGCACCGTCCCTGAGGGACTCCTGCCTCAGTTGGAT
GGCCGCATTGTCGGCGGCTCTGCTACCACCATCAGCAGCTTCCCCTGGCA
GATCTCCCTGCAGCGCAGTGGCAGCCACTCCTGCGGTGGATCCATCTACT
CTGCCAACATCATTGTGACCGCCGCTCACTGTCTGCAGTCCGTGTCCGCT
TCAGTCCTGCAGGTCCGTGCTGGATCCACCTACTGGAGCTCTGGTGGCGT
CGTCGCCAAGGTTTCCTCTTTCAAGAACCACGAGGGATACAACGCTAACA
CCATGGTCAACGACATCGCTGTCATCCGTCTGAGCTCTTCCCTGAGCTTC
AGCTCAAGCATCAAGGCTATTAGCCTGGCCACTTACAACCCAGCTAACGG
AGCCTCTGCCGCCGTTTCCGGTTGGGGTACCCAGTCGTCCGGATCCAGCT
CCATCCCCTCCCAGCTGCAGTACGTGAACGTGAACATCGTTAGCCAGAGC
CAGTGTGCTTCCTCCACCTACGGATACGGTAGCCAGATCCGCAACACCAT
GATCTGCGCTGCTGCCAGCGGCAAGGATGCCTGCCAGGGTGACTCCGGTG
GCCCACTGGTCTCCGGCGGAGTCCTCGTCGGTGTTGTCTCCTGNGGATAC
GGATGCGCTTACTCCAACTACCCCGGTGTCTATGCCGATGTTGCTGTCCT
CCGCTCTTGGGTGGTGAGCACTGCTAACAG
BS12095.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:27:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18444-PA | 771 | alphaTry-RA | 1..764 | 17..780 | 3801 | 99.8 | Plus |
CG30025-PA | 762 | CG30025-RA | 474..747 | 490..763 | 1276 | 98.5 | Plus |
CG12351-PA | 762 | deltaTry-RA | 474..746 | 490..762 | 1271 | 98.5 | Plus |
CG30031-PA | 762 | CG30031-RA | 474..746 | 490..762 | 1271 | 98.5 | Plus |
CG30028-PA | 762 | gammaTry-RA | 474..746 | 490..762 | 1271 | 98.5 | Plus |
CG30025-PA | 762 | CG30025-RA | 36..185 | 52..201 | 725 | 99.3 | Plus |
CG12351-PA | 762 | deltaTry-RA | 36..185 | 52..201 | 725 | 99.3 | Plus |
CG30031-PA | 762 | CG30031-RA | 36..185 | 52..201 | 725 | 99.3 | Plus |
CG30028-PA | 762 | gammaTry-RA | 36..185 | 52..201 | 725 | 99.3 | Plus |
CG18211-PA | 762 | betaTry-RA | 36..185 | 52..201 | 600 | 96 | Plus |
CG18211-PA | 762 | betaTry-RA | 240..401 | 256..417 | 485 | 91.9 | Plus |
CG18211-PA | 762 | betaTry-RA | 616..689 | 632..705 | 351 | 98.6 | Plus |
CG30025-PA | 762 | CG30025-RA | 199..275 | 215..291 | 310 | 96.1 | Plus |
CG12351-PA | 762 | deltaTry-RA | 199..275 | 215..291 | 310 | 96.1 | Plus |
CG30031-PA | 762 | CG30031-RA | 199..275 | 215..291 | 310 | 96.1 | Plus |
CG30028-PA | 762 | gammaTry-RA | 199..275 | 215..291 | 310 | 96.1 | Plus |
CG18681-PA | 771 | epsilonTry-RA | 606..650 | 622..666 | 200 | 97.7 | Plus |
CG30025-PA | 762 | CG30025-RA | 298..350 | 314..366 | 190 | 94.3 | Plus |
CG12351-PA | 762 | deltaTry-RA | 298..350 | 314..366 | 190 | 94.3 | Plus |
CG30031-PA | 762 | CG30031-RA | 298..350 | 314..366 | 190 | 94.3 | Plus |
CG30028-PA | 762 | gammaTry-RA | 298..350 | 314..366 | 190 | 94.3 | Plus |
CG18211-PA | 762 | betaTry-RA | 700..747 | 716..763 | 190 | 95.8 | Plus |
CG18211-PA | 762 | betaTry-RA | 199..233 | 215..249 | 150 | 97.1 | Plus |
CG7754-PA | 759 | iotaTry-RA | 687..713 | 715..741 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:08:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alphaTry-RA | 860 | CG18444-RA | 27..791 | 16..780 | 3814 | 99.9 | Plus |
CG30025-RA | 810 | CG30025-RA | 14..761 | 16..763 | 2634 | 90.1 | Plus |
gammaTry-RA | 810 | CG30028-RA | 15..761 | 16..762 | 2629 | 90.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:08:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11344329..11345093 | 780..16 | 3814 | 99.9 | Minus |
2R | 25286936 | 2R | 11353613..11354360 | 763..16 | 2634 | 90.1 | Minus |
2R | 25286936 | 2R | 11349110..11349856 | 762..16 | 2629 | 90.1 | Minus |
2R | 25286936 | 2R | 11350826..11351572 | 16..762 | 2629 | 90.1 | Plus |
2R | 25286936 | 2R | 11355332..11356078 | 16..762 | 2629 | 90.1 | Plus |
2R | 25286936 | 2R | 11346341..11347088 | 16..763 | 2379 | 87.8 | Plus |
2R | 25286936 | 2R | 11345320..11345442 | 744..622 | 289 | 82.1 | Minus |
2R | 25286936 | 2R | 11345694..11346016 | 370..48 | 250 | 71.8 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:08:08 has no hits.
BS12095.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:56 Download gff for
BS12095.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18444-PA | 1..764 | 17..780 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:00:58 Download gff for
BS12095.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alphaTry-RA | 27..791 | 16..780 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:55:20 Download gff for
BS12095.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alphaTry-RA | 27..791 | 16..780 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:55:20 Download gff for
BS12095.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11344329..11345093 | 16..780 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:00:58 Download gff for
BS12095.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7231834..7232598 | 16..780 | 99 | | Minus |
BS12095.complete Sequence
803 bp assembled on 2006-11-01
GenBank Submission: FJ637068
> BS12095.complete
GAAGTTATCAGTCGACATGTTGAAGATCGTGATCCTCTTGTCCGCCGTGG
TCTGCGCCCTGGGAGGCACCGTCCCTGAGGGACTCCTGCCTCAGTTGGAT
GGCCGCATTGTCGGCGGCTCTGCTACCACCATCAGCAGCTTCCCCTGGCA
GATCTCCCTGCAGCGCAGTGGCAGCCACTCCTGCGGTGGATCCATCTACT
CTGCCAACATCATTGTGACCGCCGCTCACTGTCTGCAGTCCGTGTCCGCT
TCAGTCCTGCAGGTCCGTGCTGGATCCACCTACTGGAGCTCTGGTGGCGT
CGTCGCCAAGGTTTCCTCTTTCAAGAACCACGAGGGATACAACGCTAACA
CCATGGTCAACGACATCGCTGTCATCCGTCTGAGCTCTTCCCTGAGCTTC
AGCTCAAGCATCAAGGCTATTAGCCTGGCCACTTACAACCCAGCTAACGG
AGCCTCTGCCGCCGTTTCCGGTTGGGGTACCCAGTCGTCCGGATCCAGCT
CCATCCCCTCCCAGCTGCAGTACGTGAACGTGAACATCGTTAGCCAGAGC
CAGTGTGCTTCCTCCACCTACGGATACGGTAGCCAGATCCGCAACACCAT
GATCTGCGCTGCTGCCAGCGGCAAGGATGCCTGCCAGGGTGACTCCGGTG
GCCCACTGGTCTCCGGCGGAGTCCTCGTCGGTGTTGTCTCCTGGGGATAC
GGATGCGCTTACTCCAACTACCCCGGTGTCTATGCCGATGTTGCTGTCCT
CCGCTCTTGGGTGGTGAGCACTGCTAACAGCATCTAAAAGCTTTCTAGAC
CAT
BS12095.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:52:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alphaTry-RA | 771 | CG18444-PA | 1..771 | 17..787 | 3855 | 100 | Plus |
CG30025-RA | 762 | CG30025-PA | 1..747 | 17..763 | 2640 | 90.2 | Plus |
gammaTry-RA | 762 | CG30028-PA | 1..746 | 17..762 | 2635 | 90.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:52:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alphaTry-RA | 860 | CG18444-RA | 27..798 | 16..787 | 3860 | 100 | Plus |
CG30025-RA | 810 | CG30025-RA | 14..761 | 16..763 | 2645 | 90.2 | Plus |
gammaTry-RA | 810 | CG30028-RA | 15..761 | 16..762 | 2640 | 90.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:52:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11344322..11345093 | 787..16 | 3860 | 100 | Minus |
2R | 25286936 | 2R | 11353613..11354360 | 763..16 | 2645 | 90.2 | Minus |
2R | 25286936 | 2R | 11349110..11349856 | 762..16 | 2640 | 90.2 | Minus |
2R | 25286936 | 2R | 11350826..11351572 | 16..762 | 2640 | 90.2 | Plus |
2R | 25286936 | 2R | 11355332..11356078 | 16..762 | 2640 | 90.2 | Plus |
2R | 25286936 | 2R | 11346341..11347088 | 16..763 | 2390 | 88 | Plus |
2R | 25286936 | 2R | 11345320..11345442 | 744..622 | 300 | 82.9 | Minus |
2R | 25286936 | 2R | 11345694..11346016 | 370..48 | 250 | 71.8 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:52:14 has no hits.
BS12095.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:46:38 Download gff for
BS12095.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alphaTry-RA | 1..771 | 17..787 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:21:44 Download gff for
BS12095.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alphaTry-RA | 23..797 | 16..792 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:39:24 Download gff for
BS12095.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alphaTry-RA | 33..796 | 22..785 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:46:38 Download gff for
BS12095.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alphaTry-RA | 23..797 | 16..792 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:44:38 Download gff for
BS12095.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alphaTry-RA | 33..796 | 22..785 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:44:38 Download gff for
BS12095.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11344324..11345087 | 22..785 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:39:24 Download gff for
BS12095.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7231829..7232592 | 22..785 | 100 | | Minus |
BS12095.pep Sequence
Translation from 16 to 786
> BS12095.pep
MLKIVILLSAVVCALGGTVPEGLLPQLDGRIVGGSATTISSFPWQISLQR
SGSHSCGGSIYSANIIVTAAHCLQSVSASVLQVRAGSTYWSSGGVVAKVS
SFKNHEGYNANTMVNDIAVIRLSSSLSFSSSIKAISLATYNPANGASAAV
SGWGTQSSGSSSIPSQLQYVNVNIVSQSQCASSTYGYGSQIRNTMICAAA
SGKDACQGDSGGPLVSGGVLVGVVSWGYGCAYSNYPGVYADVAVLRSWVV
STANSI*
BS12095.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alphaTry-PA | 256 | CG18444-PA | 1..256 | 1..256 | 1297 | 100 | Plus |
gammaTry-PA | 253 | CG30028-PA | 1..253 | 1..253 | 1178 | 88.9 | Plus |
deltaTry-PA | 253 | CG12351-PA | 1..253 | 1..253 | 1178 | 88.9 | Plus |
CG30031-PA | 253 | CG30031-PA | 1..253 | 1..253 | 1178 | 88.9 | Plus |
CG30025-PA | 253 | CG30025-PA | 1..253 | 1..253 | 1175 | 88.5 | Plus |