Clone BS12095 Report

Search the DGRC for BS12095

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:120
Well:95
Vector:pDNR-Dual
Associated Gene/TranscriptalphaTry-RA
Protein status:BS12095.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12095.3prime Sequence

801 bp (750 high quality bases) assembled on 2006-06-16

> BS12095.3prime
ATGGTCTAGAAAGCTTTTAGATGCTGTTAGCAGTGCTCACCACCCAAGAG
CGGAGGACAGCAACATCGGCATAGACACCGGGGTAGTTGGAGTAAGCGCA
TCCGTATCCCCAGGAGACAACACCGACGAGGACTCCGCCGGAGACCAGTG
GGCCACCGGAGTCACCCTGGCAGGCATCCTTGCCGCTGGCAGCAGCGCAG
ATCATGGTGTTGCGGATCTGGCTACCGTATCCGTAGGTGGAGGAAGCACA
CTGGCTCTGGCTAACGATGTTCACGTTCACGTACTGCAGCTGGGAGGGGA
TGGAGCTGGATCCGGACGACTGGGTACCCCAACCGGAAACGGCGGCAGAG
GCTCCGTTAGCTGGGTTGTAAGTGGCCAGGCTAATAGCCTTGATGCTTGA
GCTGAAGCTCAGGGAAGAGCTCAGACGGATGACAGCGATGTCGTTGACCA
TGGTGTTAGCGTTGTATCCCTCGTGGTTCTTGAAAGAGGAAACCTTGGCG
ACGACGCCACCAGAGCTCCAGTAGGTGGATCCAGCACGGACCTGCAGGAC
TGAAGCGGACACGGACTGCAGACAGTGAGCGGCGGTCACAATGATGTTGG
CAGAGTAGATGGATCCACCGCAGGAGTGGCTGCCACTGCGCTGCAGGGAG
ATCTGCCAGGGGAAGCTGCTGATGGTGGTAGCAGAGCCGCCGACAATGCG
GCCATCCAACTGAGGCAGGAGTCCCTCAGGGACGGTGCCTCCCAGGGCGC
AGACCCCGGCGGACAAGAGGATCACGATCTTCACCATGTCGACTGATAAC
T

BS12095.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:27:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG18444-PA 771 alphaTry-RA 5..771 783..17 3810 99.8 Minus
CG30025-PA 762 CG30025-RA 474..747 314..41 1295 98.9 Minus
CG12351-PA 762 deltaTry-RA 474..746 314..42 1290 98.9 Minus
CG30031-PA 762 CG30031-RA 474..746 314..42 1290 98.9 Minus
CG30028-PA 762 gammaTry-RA 474..746 314..42 1290 98.9 Minus
CG30025-PA 762 CG30025-RA 36..185 752..603 725 99.3 Minus
CG12351-PA 762 deltaTry-RA 36..185 752..603 725 99.3 Minus
CG30031-PA 762 CG30031-RA 36..185 752..603 725 99.3 Minus
CG30028-PA 762 gammaTry-RA 36..185 752..603 725 99.3 Minus
CG18211-PA 762 betaTry-RA 36..185 752..603 600 96 Minus
CG18211-PA 762 betaTry-RA 240..401 548..387 485 91.9 Minus
CG18211-PA 762 betaTry-RA 616..689 172..99 370 100 Minus
CG30025-PA 762 CG30025-RA 199..275 589..513 310 96.1 Minus
CG12351-PA 762 deltaTry-RA 199..275 589..513 310 96.1 Minus
CG30031-PA 762 CG30031-RA 199..275 589..513 310 96.1 Minus
CG30028-PA 762 gammaTry-RA 199..275 589..513 310 96.1 Minus
CG18681-PA 771 epsilonTry-RA 606..650 182..138 200 97.7 Minus
CG30025-PA 762 CG30025-RA 298..350 490..438 190 94.3 Minus
CG12351-PA 762 deltaTry-RA 298..350 490..438 190 94.3 Minus
CG30031-PA 762 CG30031-RA 298..350 490..438 190 94.3 Minus
CG30028-PA 762 gammaTry-RA 298..350 490..438 190 94.3 Minus
CG18211-PA 762 betaTry-RA 700..747 88..41 190 95.8 Minus
CG18211-PA 762 betaTry-RA 199..233 589..555 150 97.1 Minus
CG7754-PA 759 iotaTry-RA 687..713 89..63 135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:52:35
Subject Length Description Subject Range Query Range Score Percent Strand
alphaTry-RA 860 CG18444-RA 27..798 788..17 3830 99.7 Minus
CG30025-RA 810 CG30025-RA 14..761 788..41 2630 90.1 Minus
gammaTry-RA 810 CG30028-RA 15..761 788..42 2625 90.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:52:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11344322..11345093 17..788 3830 99.7 Plus
2R 25286936 2R 11353613..11354360 41..788 2630 90.1 Plus
2R 25286936 2R 11349110..11349856 42..788 2625 90.1 Plus
2R 25286936 2R 11350826..11351572 788..42 2625 90.1 Minus
2R 25286936 2R 11355332..11356078 788..42 2625 90.1 Minus
2R 25286936 2R 11346341..11347088 788..41 2375 87.8 Minus
2R 25286936 2R 11345320..11345442 60..182 300 82.9 Plus
2R 25286936 2R 11345694..11346012 434..752 245 71.8 Plus
Blast to na_te.dros performed on 2015-02-12 03:52:34 has no hits.

BS12095.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:55 Download gff for BS12095.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18444-PA 1..771 17..787 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:31:13 Download gff for BS12095.3prime
Subject Subject Range Query Range Percent Splice Strand
alphaTry-RA 27..801 12..788 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:44:52 Download gff for BS12095.3prime
Subject Subject Range Query Range Percent Splice Strand
alphaTry-RA 27..801 12..788 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:44:52 Download gff for BS12095.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 11344319..11345093 12..788 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:31:13 Download gff for BS12095.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7231824..7232598 12..788 99   Plus

BS12095.5prime Sequence

780 bp (750 high quality bases) assembled on 2006-06-16

> BS12095.5prime
GAAGTTATCAGTCGACATGTTGAAGATCGTGATCCTCTTGTCCGCCGTGG
TCTGCGCCCTGGGAGGCACCGTCCCTGAGGGACTCCTGCCTCAGTTGGAT
GGCCGCATTGTCGGCGGCTCTGCTACCACCATCAGCAGCTTCCCCTGGCA
GATCTCCCTGCAGCGCAGTGGCAGCCACTCCTGCGGTGGATCCATCTACT
CTGCCAACATCATTGTGACCGCCGCTCACTGTCTGCAGTCCGTGTCCGCT
TCAGTCCTGCAGGTCCGTGCTGGATCCACCTACTGGAGCTCTGGTGGCGT
CGTCGCCAAGGTTTCCTCTTTCAAGAACCACGAGGGATACAACGCTAACA
CCATGGTCAACGACATCGCTGTCATCCGTCTGAGCTCTTCCCTGAGCTTC
AGCTCAAGCATCAAGGCTATTAGCCTGGCCACTTACAACCCAGCTAACGG
AGCCTCTGCCGCCGTTTCCGGTTGGGGTACCCAGTCGTCCGGATCCAGCT
CCATCCCCTCCCAGCTGCAGTACGTGAACGTGAACATCGTTAGCCAGAGC
CAGTGTGCTTCCTCCACCTACGGATACGGTAGCCAGATCCGCAACACCAT
GATCTGCGCTGCTGCCAGCGGCAAGGATGCCTGCCAGGGTGACTCCGGTG
GCCCACTGGTCTCCGGCGGAGTCCTCGTCGGTGTTGTCTCCTGNGGATAC
GGATGCGCTTACTCCAACTACCCCGGTGTCTATGCCGATGTTGCTGTCCT
CCGCTCTTGGGTGGTGAGCACTGCTAACAG

BS12095.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:27:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG18444-PA 771 alphaTry-RA 1..764 17..780 3801 99.8 Plus
CG30025-PA 762 CG30025-RA 474..747 490..763 1276 98.5 Plus
CG12351-PA 762 deltaTry-RA 474..746 490..762 1271 98.5 Plus
CG30031-PA 762 CG30031-RA 474..746 490..762 1271 98.5 Plus
CG30028-PA 762 gammaTry-RA 474..746 490..762 1271 98.5 Plus
CG30025-PA 762 CG30025-RA 36..185 52..201 725 99.3 Plus
CG12351-PA 762 deltaTry-RA 36..185 52..201 725 99.3 Plus
CG30031-PA 762 CG30031-RA 36..185 52..201 725 99.3 Plus
CG30028-PA 762 gammaTry-RA 36..185 52..201 725 99.3 Plus
CG18211-PA 762 betaTry-RA 36..185 52..201 600 96 Plus
CG18211-PA 762 betaTry-RA 240..401 256..417 485 91.9 Plus
CG18211-PA 762 betaTry-RA 616..689 632..705 351 98.6 Plus
CG30025-PA 762 CG30025-RA 199..275 215..291 310 96.1 Plus
CG12351-PA 762 deltaTry-RA 199..275 215..291 310 96.1 Plus
CG30031-PA 762 CG30031-RA 199..275 215..291 310 96.1 Plus
CG30028-PA 762 gammaTry-RA 199..275 215..291 310 96.1 Plus
CG18681-PA 771 epsilonTry-RA 606..650 622..666 200 97.7 Plus
CG30025-PA 762 CG30025-RA 298..350 314..366 190 94.3 Plus
CG12351-PA 762 deltaTry-RA 298..350 314..366 190 94.3 Plus
CG30031-PA 762 CG30031-RA 298..350 314..366 190 94.3 Plus
CG30028-PA 762 gammaTry-RA 298..350 314..366 190 94.3 Plus
CG18211-PA 762 betaTry-RA 700..747 716..763 190 95.8 Plus
CG18211-PA 762 betaTry-RA 199..233 215..249 150 97.1 Plus
CG7754-PA 759 iotaTry-RA 687..713 715..741 135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:08:09
Subject Length Description Subject Range Query Range Score Percent Strand
alphaTry-RA 860 CG18444-RA 27..791 16..780 3814 99.9 Plus
CG30025-RA 810 CG30025-RA 14..761 16..763 2634 90.1 Plus
gammaTry-RA 810 CG30028-RA 15..761 16..762 2629 90.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:08:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11344329..11345093 780..16 3814 99.9 Minus
2R 25286936 2R 11353613..11354360 763..16 2634 90.1 Minus
2R 25286936 2R 11349110..11349856 762..16 2629 90.1 Minus
2R 25286936 2R 11350826..11351572 16..762 2629 90.1 Plus
2R 25286936 2R 11355332..11356078 16..762 2629 90.1 Plus
2R 25286936 2R 11346341..11347088 16..763 2379 87.8 Plus
2R 25286936 2R 11345320..11345442 744..622 289 82.1 Minus
2R 25286936 2R 11345694..11346016 370..48 250 71.8 Minus
Blast to na_te.dros performed on 2015-02-11 09:08:08 has no hits.

BS12095.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:56 Download gff for BS12095.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18444-PA 1..764 17..780 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:00:58 Download gff for BS12095.5prime
Subject Subject Range Query Range Percent Splice Strand
alphaTry-RA 27..791 16..780 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:55:20 Download gff for BS12095.5prime
Subject Subject Range Query Range Percent Splice Strand
alphaTry-RA 27..791 16..780 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:55:20 Download gff for BS12095.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 11344329..11345093 16..780 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:00:58 Download gff for BS12095.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7231834..7232598 16..780 99   Minus

BS12095.complete Sequence

803 bp assembled on 2006-11-01

GenBank Submission: FJ637068

> BS12095.complete
GAAGTTATCAGTCGACATGTTGAAGATCGTGATCCTCTTGTCCGCCGTGG
TCTGCGCCCTGGGAGGCACCGTCCCTGAGGGACTCCTGCCTCAGTTGGAT
GGCCGCATTGTCGGCGGCTCTGCTACCACCATCAGCAGCTTCCCCTGGCA
GATCTCCCTGCAGCGCAGTGGCAGCCACTCCTGCGGTGGATCCATCTACT
CTGCCAACATCATTGTGACCGCCGCTCACTGTCTGCAGTCCGTGTCCGCT
TCAGTCCTGCAGGTCCGTGCTGGATCCACCTACTGGAGCTCTGGTGGCGT
CGTCGCCAAGGTTTCCTCTTTCAAGAACCACGAGGGATACAACGCTAACA
CCATGGTCAACGACATCGCTGTCATCCGTCTGAGCTCTTCCCTGAGCTTC
AGCTCAAGCATCAAGGCTATTAGCCTGGCCACTTACAACCCAGCTAACGG
AGCCTCTGCCGCCGTTTCCGGTTGGGGTACCCAGTCGTCCGGATCCAGCT
CCATCCCCTCCCAGCTGCAGTACGTGAACGTGAACATCGTTAGCCAGAGC
CAGTGTGCTTCCTCCACCTACGGATACGGTAGCCAGATCCGCAACACCAT
GATCTGCGCTGCTGCCAGCGGCAAGGATGCCTGCCAGGGTGACTCCGGTG
GCCCACTGGTCTCCGGCGGAGTCCTCGTCGGTGTTGTCTCCTGGGGATAC
GGATGCGCTTACTCCAACTACCCCGGTGTCTATGCCGATGTTGCTGTCCT
CCGCTCTTGGGTGGTGAGCACTGCTAACAGCATCTAAAAGCTTTCTAGAC
CAT

BS12095.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:52:15
Subject Length Description Subject Range Query Range Score Percent Strand
alphaTry-RA 771 CG18444-PA 1..771 17..787 3855 100 Plus
CG30025-RA 762 CG30025-PA 1..747 17..763 2640 90.2 Plus
gammaTry-RA 762 CG30028-PA 1..746 17..762 2635 90.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:52:16
Subject Length Description Subject Range Query Range Score Percent Strand
alphaTry-RA 860 CG18444-RA 27..798 16..787 3860 100 Plus
CG30025-RA 810 CG30025-RA 14..761 16..763 2645 90.2 Plus
gammaTry-RA 810 CG30028-RA 15..761 16..762 2640 90.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:52:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11344322..11345093 787..16 3860 100 Minus
2R 25286936 2R 11353613..11354360 763..16 2645 90.2 Minus
2R 25286936 2R 11349110..11349856 762..16 2640 90.2 Minus
2R 25286936 2R 11350826..11351572 16..762 2640 90.2 Plus
2R 25286936 2R 11355332..11356078 16..762 2640 90.2 Plus
2R 25286936 2R 11346341..11347088 16..763 2390 88 Plus
2R 25286936 2R 11345320..11345442 744..622 300 82.9 Minus
2R 25286936 2R 11345694..11346016 370..48 250 71.8 Minus
Blast to na_te.dros performed on 2014-11-26 21:52:14 has no hits.

BS12095.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:46:38 Download gff for BS12095.complete
Subject Subject Range Query Range Percent Splice Strand
alphaTry-RA 1..771 17..787 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:21:44 Download gff for BS12095.complete
Subject Subject Range Query Range Percent Splice Strand
alphaTry-RA 23..797 16..792 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:39:24 Download gff for BS12095.complete
Subject Subject Range Query Range Percent Splice Strand
alphaTry-RA 33..796 22..785 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:46:38 Download gff for BS12095.complete
Subject Subject Range Query Range Percent Splice Strand
alphaTry-RA 23..797 16..792 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:44:38 Download gff for BS12095.complete
Subject Subject Range Query Range Percent Splice Strand
alphaTry-RA 33..796 22..785 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:44:38 Download gff for BS12095.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11344324..11345087 22..785 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:39:24 Download gff for BS12095.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7231829..7232592 22..785 100   Minus

BS12095.pep Sequence

Translation from 16 to 786

> BS12095.pep
MLKIVILLSAVVCALGGTVPEGLLPQLDGRIVGGSATTISSFPWQISLQR
SGSHSCGGSIYSANIIVTAAHCLQSVSASVLQVRAGSTYWSSGGVVAKVS
SFKNHEGYNANTMVNDIAVIRLSSSLSFSSSIKAISLATYNPANGASAAV
SGWGTQSSGSSSIPSQLQYVNVNIVSQSQCASSTYGYGSQIRNTMICAAA
SGKDACQGDSGGPLVSGGVLVGVVSWGYGCAYSNYPGVYADVAVLRSWVV
STANSI*

BS12095.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:54
Subject Length Description Subject Range Query Range Score Percent Strand
alphaTry-PA 256 CG18444-PA 1..256 1..256 1297 100 Plus
gammaTry-PA 253 CG30028-PA 1..253 1..253 1178 88.9 Plus
deltaTry-PA 253 CG12351-PA 1..253 1..253 1178 88.9 Plus
CG30031-PA 253 CG30031-PA 1..253 1..253 1178 88.9 Plus
CG30025-PA 253 CG30025-PA 1..253 1..253 1175 88.5 Plus