Clone Sequence Records
BS12096.3prime Sequence
784 bp (699 high quality bases) assembled on 2006-06-16
> BS12096.3prime
ATGGTCTAGAAAGCTTTTACTTGTCCTTGCTGTCGCCCTTGCCACCACGG
ATCCTACCGGTACGACGGGCAGCGATGAGACCGACCTTGCGACCGGCGGA
TGTGCCTCGCTTGACGGTGGAGGCCTTACCAATGTGCTGATGGTTACCAC
CACCGTGAGGATGCTCCACGGGGTTCATGGCCACACCACGCACCTTAGGC
CAGCTGTTGCGCTTCACCTTGTACTTGTGGTAGGCACGACCGGCCTTCAG
GATGGGCTTGTCGATACGACCGCCGCCGGCGACGATGCCAACCATGGCGC
GGTTGGCCGAGGGCACGACCTTCTTGGCGCCGGATGGCAGCTTGACACGC
GTCTTCTTGGTGTCCTGGTTGTGGGCAATCACGGTGGCGTAGTTGCCAGA
GGTGCGGGCCAAACGGCCGCGATCACCGGTCTTCTCCTCCAGGTTGCAGA
TGATGGTACCCTCGGGCATCTGGCTGAGGGGCATCACGTTGCCGATCTGA
AGGGTGGCCTTGCGGCCGCAGTACACGAACTGGCCGGTGTGCATGCCCTC
GGGGGCGATGAACAGCTCCTTGCGGATCTTGTAGCGGTAGGGGTCGCGGA
AGTGGACGACGGCCAGAGGAGCGCCACGGCCGGGATCGTGGATGATGTCC
TTGACAACTCCGCGGATGTAGCCGGAACGCTCGGCGAAGTCCAGGGAACG
CAACTTGGCGGCTCCCTTGCGCTTCTTCCCGTGCGCCTTGGACACGGAAC
CAGCTCCCTTACGCTGTGCACGAATTACGCGACC
BS12096.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:27:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1263-PA | 771 | RpL8-RA | 4..771 | 784..17 | 3740 | 99.4 | Minus |
CG1263-PB | 771 | RpL8-RB | 4..771 | 784..17 | 3740 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:17:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL8-RB | 1173 | CG1263-RB | 239..1006 | 784..17 | 3780 | 99.5 | Minus |
RpL8-RA | 998 | CG1263-RA | 64..831 | 784..17 | 3780 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:17:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2588082..2588716 | 651..17 | 3175 | 100 | Minus |
3L | 28110227 | 3L | 2587756..2587891 | 784..649 | 620 | 97.1 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:17:49 has no hits.
BS12096.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:56 Download gff for
BS12096.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1263-PB | 4..771 | 17..784 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:40:05 Download gff for
BS12096.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL8-RA | 64..834 | 12..784 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:25:17 Download gff for
BS12096.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL8-RA | 64..834 | 12..784 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:25:17 Download gff for
BS12096.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2587756..2587890 | 650..784 | 97 | -> | Minus |
3L | 2588084..2588719 | 12..649 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:40:05 Download gff for
BS12096.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2587756..2587890 | 650..784 | 97 | -> | Minus |
arm_3L | 2588084..2588719 | 12..649 | 99 | | Minus |
BS12096.5prime Sequence
663 bp (660 high quality bases) assembled on 2006-06-16
> BS12096.5prime
GAAGTTATCAGTCGACATGGGTCGCGTTATTCGTGCACAGCGTAAGGGAG
CTGGTTCCGTGTTCAAGGCGCACGTGAAGAAGCGCAAGGGAGCCGCCAAG
CTGCGTTCCCTGGACTTCGCCGAGCGTTCCGGCTACATCCGCGGAGTTGT
CAAGGACATCATCCACGATCCCGGCCGTGGCGCTCCTCTGGCCGTCGTCC
ACTTCCGCGACCCCTACCGCTACAAGATCCGCAAGGAGCTGTTCATCGCC
CCCGAGGGCATGCACACCGGCCAGTTCGTGTACTGCGGCCGCAAGGCCAC
CCTTCAGATCGGCAACGTGATGCCCCTCAGCCAGATGCCCGAGGGTACCA
TCATCTGCAACCTGGAGGAGAAGACCGGTGATCGCGGCCGTTTGGCCCGC
ACCTCTGGCAACTACGCCACCGTGATTGCCCACAACCAGGACACCAAGAA
GACGCGTGTCAAGCTGCCATCCGGCGCCAAGAAGGTCGTGCCCTCGGCCA
ACCGCGCCATGGTTGGCATCGTCGCCGGCGGCGGTCGTATCGACAAGCCC
ATCCTGAAGGCCGGTCGTGCCTACCACAAGTACAAGGTGAAGCGCAACAG
CTGGCCTAAGGTGCGTGGTGTGGCCATGAACCCCGTGGAGCATCCTCACG
GTGGTGGTAACCA
BS12096.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:27:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1263-PA | 771 | RpL8-RA | 1..647 | 17..663 | 3235 | 100 | Plus |
CG1263-PB | 771 | RpL8-RB | 1..647 | 17..663 | 3235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:52:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL8-RB | 1173 | CG1263-RB | 236..882 | 17..663 | 3235 | 100 | Plus |
RpL8-RA | 998 | CG1263-RA | 61..707 | 17..663 | 3235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:52:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2588082..2588592 | 153..663 | 2555 | 100 | Plus |
3L | 28110227 | 3L | 2587753..2587891 | 17..155 | 695 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:52:43 has no hits.
BS12096.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:56 Download gff for
BS12096.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1263-PB | 1..646 | 17..662 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:31:16 Download gff for
BS12096.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL8-RA | 61..706 | 17..662 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:45:13 Download gff for
BS12096.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL8-RA | 61..706 | 17..662 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:45:13 Download gff for
BS12096.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2587745..2587890 | 5..154 | 96 | -> | Plus |
3L | 2588084..2588591 | 155..662 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:31:16 Download gff for
BS12096.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2587745..2587890 | 5..154 | 96 | -> | Plus |
arm_3L | 2588084..2588591 | 155..662 | 100 | | Plus |
BS12096.complete Sequence
803 bp assembled on 2006-11-01
GenBank Submission: FJ638841
> BS12096.complete
GAAGTTATCAGTCGACATGGGTCGCGTTATTCGTGCACAGCGTAAGGGAG
CTGGTTCCGTGTTCAAGGCGCACGTGAAGAAGCGCAAGGGAGCCGCCAAG
CTGCGTTCCCTGGACTTCGCCGAGCGTTCCGGCTACATCCGCGGAGTTGT
CAAGGACATCATCCACGATCCCGGCCGTGGCGCTCCTCTGGCCGTCGTCC
ACTTCCGCGACCCCTACCGCTACAAGATCCGCAAGGAGCTGTTCATCGCC
CCCGAGGGCATGCACACCGGCCAGTTCGTGTACTGCGGCCGCAAGGCCAC
CCTTCAGATCGGCAACGTGATGCCCCTCAGCCAGATGCCCGAGGGTACCA
TCATCTGCAACCTGGAGGAGAAGACCGGTGATCGCGGCCGTTTGGCCCGC
ACCTCTGGCAACTACGCCACCGTGATTGCCCACAACCAGGACACCAAGAA
GACGCGTGTCAAGCTGCCATCCGGCGCCAAGAAGGTCGTGCCCTCGGCCA
ACCGCGCCATGGTTGGCATCGTCGCCGGCGGCGGTCGTATCGACAAGCCC
ATCCTGAAGGCCGGTCGTGCCTACCACAAGTACAAGGTGAAGCGCAACAG
CTGGCCTAAGGTGCGTGGTGTGGCCATGAACCCCGTGGAGCATCCTCACG
GTGGTGGTAACCATCAGCACATTGGTAAGGCCTCCACCGTCAAGCGAGGC
ACATCCGCCGGTCGCAAGGTCGGTCTCATCGCTGCCCGTCGTACCGGTAG
GATCCGTGGTGGCAAGGGCGACAGCAAGGACAAGTAAAAGCTTTCTAGAC
CAT
BS12096.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:01:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL8-RB | 771 | CG1263-PB | 1..771 | 17..787 | 3855 | 100 | Plus |
RpL8-RA | 771 | CG1263-PA | 1..771 | 17..787 | 3855 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:01:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL8-RB | 1173 | CG1263-RB | 236..1006 | 17..787 | 3855 | 100 | Plus |
RpL8-RA | 998 | CG1263-RA | 61..831 | 17..787 | 3855 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:01:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2588082..2588716 | 153..787 | 3175 | 100 | Plus |
3L | 28110227 | 3L | 2587753..2587891 | 17..155 | 695 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:01:10 has no hits.
BS12096.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:46:42 Download gff for
BS12096.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL8-RB | 1..771 | 17..787 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:21:46 Download gff for
BS12096.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL8-RB | 205..986 | 5..792 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:04:43 Download gff for
BS12096.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL8-RA | 61..829 | 17..785 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:46:42 Download gff for
BS12096.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL8-RB | 205..986 | 5..792 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:06 Download gff for
BS12096.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL8-RA | 61..829 | 17..785 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:06 Download gff for
BS12096.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2587753..2587890 | 17..154 | 100 | -> | Plus |
3L | 2588084..2588714 | 155..785 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:04:43 Download gff for
BS12096.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2587753..2587890 | 17..154 | 100 | -> | Plus |
arm_3L | 2588084..2588714 | 155..785 | 100 | | Plus |
BS12096.pep Sequence
Translation from 16 to 786
> BS12096.pep
MGRVIRAQRKGAGSVFKAHVKKRKGAAKLRSLDFAERSGYIRGVVKDIIH
DPGRGAPLAVVHFRDPYRYKIRKELFIAPEGMHTGQFVYCGRKATLQIGN
VMPLSQMPEGTIICNLEEKTGDRGRLARTSGNYATVIAHNQDTKKTRVKL
PSGAKKVVPSANRAMVGIVAGGGRIDKPILKAGRAYHKYKVKRNSWPKVR
GVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAARRTGRIRGGK
GDSKDK*
BS12096.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL8-PB | 256 | CG1263-PB | 1..256 | 1..256 | 1335 | 100 | Plus |
RpL8-PA | 256 | CG1263-PA | 1..256 | 1..256 | 1335 | 100 | Plus |