Clone BS12096 Report

Search the DGRC for BS12096

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:120
Well:96
Vector:pDNR-Dual
Associated Gene/TranscriptRpL8-RA
Protein status:BS12096.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12096.3prime Sequence

784 bp (699 high quality bases) assembled on 2006-06-16

> BS12096.3prime
ATGGTCTAGAAAGCTTTTACTTGTCCTTGCTGTCGCCCTTGCCACCACGG
ATCCTACCGGTACGACGGGCAGCGATGAGACCGACCTTGCGACCGGCGGA
TGTGCCTCGCTTGACGGTGGAGGCCTTACCAATGTGCTGATGGTTACCAC
CACCGTGAGGATGCTCCACGGGGTTCATGGCCACACCACGCACCTTAGGC
CAGCTGTTGCGCTTCACCTTGTACTTGTGGTAGGCACGACCGGCCTTCAG
GATGGGCTTGTCGATACGACCGCCGCCGGCGACGATGCCAACCATGGCGC
GGTTGGCCGAGGGCACGACCTTCTTGGCGCCGGATGGCAGCTTGACACGC
GTCTTCTTGGTGTCCTGGTTGTGGGCAATCACGGTGGCGTAGTTGCCAGA
GGTGCGGGCCAAACGGCCGCGATCACCGGTCTTCTCCTCCAGGTTGCAGA
TGATGGTACCCTCGGGCATCTGGCTGAGGGGCATCACGTTGCCGATCTGA
AGGGTGGCCTTGCGGCCGCAGTACACGAACTGGCCGGTGTGCATGCCCTC
GGGGGCGATGAACAGCTCCTTGCGGATCTTGTAGCGGTAGGGGTCGCGGA
AGTGGACGACGGCCAGAGGAGCGCCACGGCCGGGATCGTGGATGATGTCC
TTGACAACTCCGCGGATGTAGCCGGAACGCTCGGCGAAGTCCAGGGAACG
CAACTTGGCGGCTCCCTTGCGCTTCTTCCCGTGCGCCTTGGACACGGAAC
CAGCTCCCTTACGCTGTGCACGAATTACGCGACC

BS12096.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:27:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG1263-PA 771 RpL8-RA 4..771 784..17 3740 99.4 Minus
CG1263-PB 771 RpL8-RB 4..771 784..17 3740 99.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:17:53
Subject Length Description Subject Range Query Range Score Percent Strand
RpL8-RB 1173 CG1263-RB 239..1006 784..17 3780 99.5 Minus
RpL8-RA 998 CG1263-RA 64..831 784..17 3780 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:17:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2588082..2588716 651..17 3175 100 Minus
3L 28110227 3L 2587756..2587891 784..649 620 97.1 Minus
Blast to na_te.dros performed on 2015-02-06 10:17:49 has no hits.

BS12096.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:56 Download gff for BS12096.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1263-PB 4..771 17..784 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:40:05 Download gff for BS12096.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL8-RA 64..834 12..784 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:25:17 Download gff for BS12096.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL8-RA 64..834 12..784 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:25:17 Download gff for BS12096.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 2587756..2587890 650..784 97 -> Minus
3L 2588084..2588719 12..649 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:40:05 Download gff for BS12096.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2587756..2587890 650..784 97 -> Minus
arm_3L 2588084..2588719 12..649 99   Minus

BS12096.5prime Sequence

663 bp (660 high quality bases) assembled on 2006-06-16

> BS12096.5prime
GAAGTTATCAGTCGACATGGGTCGCGTTATTCGTGCACAGCGTAAGGGAG
CTGGTTCCGTGTTCAAGGCGCACGTGAAGAAGCGCAAGGGAGCCGCCAAG
CTGCGTTCCCTGGACTTCGCCGAGCGTTCCGGCTACATCCGCGGAGTTGT
CAAGGACATCATCCACGATCCCGGCCGTGGCGCTCCTCTGGCCGTCGTCC
ACTTCCGCGACCCCTACCGCTACAAGATCCGCAAGGAGCTGTTCATCGCC
CCCGAGGGCATGCACACCGGCCAGTTCGTGTACTGCGGCCGCAAGGCCAC
CCTTCAGATCGGCAACGTGATGCCCCTCAGCCAGATGCCCGAGGGTACCA
TCATCTGCAACCTGGAGGAGAAGACCGGTGATCGCGGCCGTTTGGCCCGC
ACCTCTGGCAACTACGCCACCGTGATTGCCCACAACCAGGACACCAAGAA
GACGCGTGTCAAGCTGCCATCCGGCGCCAAGAAGGTCGTGCCCTCGGCCA
ACCGCGCCATGGTTGGCATCGTCGCCGGCGGCGGTCGTATCGACAAGCCC
ATCCTGAAGGCCGGTCGTGCCTACCACAAGTACAAGGTGAAGCGCAACAG
CTGGCCTAAGGTGCGTGGTGTGGCCATGAACCCCGTGGAGCATCCTCACG
GTGGTGGTAACCA

BS12096.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:27:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG1263-PA 771 RpL8-RA 1..647 17..663 3235 100 Plus
CG1263-PB 771 RpL8-RB 1..647 17..663 3235 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:52:44
Subject Length Description Subject Range Query Range Score Percent Strand
RpL8-RB 1173 CG1263-RB 236..882 17..663 3235 100 Plus
RpL8-RA 998 CG1263-RA 61..707 17..663 3235 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:52:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2588082..2588592 153..663 2555 100 Plus
3L 28110227 3L 2587753..2587891 17..155 695 100 Plus
Blast to na_te.dros performed on 2015-02-12 03:52:43 has no hits.

BS12096.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:56 Download gff for BS12096.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1263-PB 1..646 17..662 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:31:16 Download gff for BS12096.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL8-RA 61..706 17..662 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:45:13 Download gff for BS12096.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL8-RA 61..706 17..662 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:45:13 Download gff for BS12096.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 2587745..2587890 5..154 96 -> Plus
3L 2588084..2588591 155..662 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:31:16 Download gff for BS12096.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2587745..2587890 5..154 96 -> Plus
arm_3L 2588084..2588591 155..662 100   Plus

BS12096.complete Sequence

803 bp assembled on 2006-11-01

GenBank Submission: FJ638841

> BS12096.complete
GAAGTTATCAGTCGACATGGGTCGCGTTATTCGTGCACAGCGTAAGGGAG
CTGGTTCCGTGTTCAAGGCGCACGTGAAGAAGCGCAAGGGAGCCGCCAAG
CTGCGTTCCCTGGACTTCGCCGAGCGTTCCGGCTACATCCGCGGAGTTGT
CAAGGACATCATCCACGATCCCGGCCGTGGCGCTCCTCTGGCCGTCGTCC
ACTTCCGCGACCCCTACCGCTACAAGATCCGCAAGGAGCTGTTCATCGCC
CCCGAGGGCATGCACACCGGCCAGTTCGTGTACTGCGGCCGCAAGGCCAC
CCTTCAGATCGGCAACGTGATGCCCCTCAGCCAGATGCCCGAGGGTACCA
TCATCTGCAACCTGGAGGAGAAGACCGGTGATCGCGGCCGTTTGGCCCGC
ACCTCTGGCAACTACGCCACCGTGATTGCCCACAACCAGGACACCAAGAA
GACGCGTGTCAAGCTGCCATCCGGCGCCAAGAAGGTCGTGCCCTCGGCCA
ACCGCGCCATGGTTGGCATCGTCGCCGGCGGCGGTCGTATCGACAAGCCC
ATCCTGAAGGCCGGTCGTGCCTACCACAAGTACAAGGTGAAGCGCAACAG
CTGGCCTAAGGTGCGTGGTGTGGCCATGAACCCCGTGGAGCATCCTCACG
GTGGTGGTAACCATCAGCACATTGGTAAGGCCTCCACCGTCAAGCGAGGC
ACATCCGCCGGTCGCAAGGTCGGTCTCATCGCTGCCCGTCGTACCGGTAG
GATCCGTGGTGGCAAGGGCGACAGCAAGGACAAGTAAAAGCTTTCTAGAC
CAT

BS12096.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:01:11
Subject Length Description Subject Range Query Range Score Percent Strand
RpL8-RB 771 CG1263-PB 1..771 17..787 3855 100 Plus
RpL8-RA 771 CG1263-PA 1..771 17..787 3855 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:01:12
Subject Length Description Subject Range Query Range Score Percent Strand
RpL8-RB 1173 CG1263-RB 236..1006 17..787 3855 100 Plus
RpL8-RA 998 CG1263-RA 61..831 17..787 3855 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:01:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2588082..2588716 153..787 3175 100 Plus
3L 28110227 3L 2587753..2587891 17..155 695 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:01:10 has no hits.

BS12096.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:46:42 Download gff for BS12096.complete
Subject Subject Range Query Range Percent Splice Strand
RpL8-RB 1..771 17..787 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:21:46 Download gff for BS12096.complete
Subject Subject Range Query Range Percent Splice Strand
RpL8-RB 205..986 5..792 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:04:43 Download gff for BS12096.complete
Subject Subject Range Query Range Percent Splice Strand
RpL8-RA 61..829 17..785 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:46:42 Download gff for BS12096.complete
Subject Subject Range Query Range Percent Splice Strand
RpL8-RB 205..986 5..792 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:06 Download gff for BS12096.complete
Subject Subject Range Query Range Percent Splice Strand
RpL8-RA 61..829 17..785 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:06 Download gff for BS12096.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2587753..2587890 17..154 100 -> Plus
3L 2588084..2588714 155..785 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:04:43 Download gff for BS12096.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2587753..2587890 17..154 100 -> Plus
arm_3L 2588084..2588714 155..785 100   Plus

BS12096.pep Sequence

Translation from 16 to 786

> BS12096.pep
MGRVIRAQRKGAGSVFKAHVKKRKGAAKLRSLDFAERSGYIRGVVKDIIH
DPGRGAPLAVVHFRDPYRYKIRKELFIAPEGMHTGQFVYCGRKATLQIGN
VMPLSQMPEGTIICNLEEKTGDRGRLARTSGNYATVIAHNQDTKKTRVKL
PSGAKKVVPSANRAMVGIVAGGGRIDKPILKAGRAYHKYKVKRNSWPKVR
GVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAARRTGRIRGGK
GDSKDK*

BS12096.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:52
Subject Length Description Subject Range Query Range Score Percent Strand
RpL8-PB 256 CG1263-PB 1..256 1..256 1335 100 Plus
RpL8-PA 256 CG1263-PA 1..256 1..256 1335 100 Plus