BS12103.complete Sequence
1547 bp assembled on 2006-11-01
GenBank Submission: FJ637069
> BS12103.complete
GAAGTTATCAGTCGACATGGACAGTCGAGCGGCAGCAGAACCCATTCCCC
ATGTGAGCCCGAGTCCATTTCCGAATCCGAGTGCGGTCAACCAAACCCTC
GAGGAGCGCCTGGGATTGGATCTAGTACAAGTCTACGACTGGGACTGGTG
GGGAACCCTGGTCCAGAGCGGCGAATCCCTCCTGCTAATCCTGTCCACCT
TGTGGTGCATTTTGCTCGCTCGAGTGGTTTGCCAAAAGCTGAGGCTTCAT
GGCTCTGCCGACCTCTGCTATGCCACGGAGTTCCTCCTGGTCATCCTGCC
CTGCATTCTGCTCGTCTCCGTGGCCGTGGACTACAGTGGCTACATAGGAC
TGCTAATGCTCGTGGCCACCTTGTGGTTTCTGCGCACGAGCAGGGCTCTG
GAACGGGCTCGCACCCGCGTTCAGTTCGACTTGGGCGGCAATAGGCCCAT
GTGCTTGTCCATCCTCCGTGCGCTGACCCACTTGATCACCGCCGTCTGCA
TTCTGGCCATCGACTTTGGCAGTTTCTATAGGCCATACCGCAAGAGCAGG
CAGTTCGGAGCCAAGCTCATGGACACCGGCATCGGTCTGTTTGTTTTCAC
CATGGCCATGGTGTCGCGGAGAACGCGTCACTGGTCAGATCTCCGCCGGA
GTGTGATCTACTCTGCCCTGCCGCTCATCCTGCTGGGACTGGCGCGCACG
GTGTCAATTTTGACTCTGAGTTACGGGCAGGATGCCCATGAGTACGGCCA
GCATCTGAATGCCTTCTTTACCCTGGGCTTCACCAAGTTCCTGGGCTCTC
TGGTCAGCATTCTGGCCCGCAAGGATCTCCATTTGCTGCCATTGGGATTC
GGTTTGTTGGTGATCCACCAGTTTGGCCTGAGTGTCCTGGGCATCTCCGA
CTATGTGATGAACGAGGATGTGGAGCGCTCGAGTTTCCTTAATGCAAATC
GCGAAGGTCTGGTTTCCTTGCCAGGATTCGTTGGACTGTTCCTGCTGTCC
ATTTACGTCAACCGTTGGATGGTGGCGAAAAGTCTGCTCACCTACTCCGA
GTTTGTCAGGAAGCTGAGGCGTCTGTTCTATCTGGTGCTTATCCTGTGGA
CCTCGTTCGTCATCAGTGCCTACGAAATTGGTATCTCCCGGGTGACCTGC
AATCTGGGCTATGTCATATGGATGCTGGCCATCGGGAGCACCACTTTGTG
TGCCAGTTTCGGAGCCATAGACTTTGCGATCAACAGCGTCATGCCGTGGG
ATCCGAATCCGTGGGAGGATCATGAGAAGGGTCTTCTATCGGGGGAGGCT
GTGGTCAAGAAAAGGGGCGGATCCGTTGTTCCGTTCACGATTAGCCAGGC
TCTGAACAAAAATGGATTGACATTCTTCCTGGTGGCCAACATTCTGACCG
GCATGGTGAACATCTTTCTCAGGCCAGAGGATCGCTCTCATTCCGAGTCC
GTCATCATTCTGCTGGTCTACATGTTTCTGGCCACCAAGCTGGTTCACGA
ATTGCTAAAGAGGGGTATTCGACTGGCCTGAAAGCTTTCTAGACCAT
BS12103.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:12:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18173-RB | 1515 | CG18173-PB | 1..1515 | 17..1531 | 7575 | 100 | Plus |
| CG18173-RA | 1515 | CG18173-PA | 1..1515 | 17..1531 | 7575 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:12:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18173-RB | 2200 | CG18173-RB | 300..1822 | 9..1531 | 7600 | 99.9 | Plus |
| CG18173-RA | 1916 | CG18173-RA | 16..1538 | 9..1531 | 7600 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:11:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1736963..1737807 | 853..9 | 4210 | 99.9 | Minus |
| 3L | 28110227 | 3L | 1736231..1736911 | 1531..851 | 3405 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:12:00 has no hits.
BS12103.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:46:43 Download gff for
BS12103.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18173-RA | 1..1515 | 17..1531 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:21:47 Download gff for
BS12103.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18173-RA | 1..1522 | 10..1531 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:36:22 Download gff for
BS12103.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18173-RA | 24..1537 | 17..1530 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:46:43 Download gff for
BS12103.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18173-RA | 1..1522 | 10..1531 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:05:41 Download gff for
BS12103.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18173-RA | 24..1537 | 17..1530 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:05:41 Download gff for
BS12103.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1736232..1736910 | 852..1530 | 100 | <- | Minus |
| 3L | 1736965..1737799 | 17..851 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:36:22 Download gff for
BS12103.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1736232..1736910 | 852..1530 | 100 | <- | Minus |
| arm_3L | 1736965..1737799 | 17..851 | 100 | | Minus |
BS12103.pep Sequence
Translation from 16 to 1530
> BS12103.pep
MDSRAAAEPIPHVSPSPFPNPSAVNQTLEERLGLDLVQVYDWDWWGTLVQ
SGESLLLILSTLWCILLARVVCQKLRLHGSADLCYATEFLLVILPCILLV
SVAVDYSGYIGLLMLVATLWFLRTSRALERARTRVQFDLGGNRPMCLSIL
RALTHLITAVCILAIDFGSFYRPYRKSRQFGAKLMDTGIGLFVFTMAMVS
RRTRHWSDLRRSVIYSALPLILLGLARTVSILTLSYGQDAHEYGQHLNAF
FTLGFTKFLGSLVSILARKDLHLLPLGFGLLVIHQFGLSVLGISDYVMNE
DVERSSFLNANREGLVSLPGFVGLFLLSIYVNRWMVAKSLLTYSEFVRKL
RRLFYLVLILWTSFVISAYEIGISRVTCNLGYVIWMLAIGSTTLCASFGA
IDFAINSVMPWDPNPWEDHEKGLLSGEAVVKKRGGSVVPFTISQALNKNG
LTFFLVANILTGMVNIFLRPEDRSHSESVIILLVYMFLATKLVHELLKRG
IRLA*
BS12103.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18173-PB | 504 | CG18173-PB | 1..504 | 1..504 | 2579 | 100 | Plus |
| CG18173-PA | 504 | CG18173-PA | 1..504 | 1..504 | 2579 | 100 | Plus |
| CG9870-PA | 459 | CG9870-PA | 21..459 | 45..504 | 785 | 40.2 | Plus |
