Clone Sequence Records
BS12104.3prime Sequence
432 bp (432 high quality bases) assembled on 2006-06-16
> BS12104.3prime
ATGGTCTAGAAAGCTTTCAGACCTCCTGCATTCGGTAGCAATCGGAGACG
ACCTTCCATTTATCATTCTCGGCGGTAACGATGAAAGTCTGCTGAAATTT
GCGTAACTGCTGATCTGCGAACTTGACGGAGCCGCTGGCCATGATGAGGT
AGGCCAGCTGGTTGGACACAGCCTGATCCACAATAGGCTGCGCGTCCAGG
GTGTTCAACTGGTGGTTTGAGGATGGCAGCTCCTGAAAGTAGCTCTCGAT
CATCTGGCGGCCGATGGCCCCGTTTCCATTCCAGCTAAGCGTAGCATTGT
CCAAATAGAGGCGTCCAATTTGTTGGCGTCGGTTGTCCACGGAGGCGTAG
TACAGGCGTGTGAAGGTATCCGCCGTACGGGCGCAGCTCTCGACCTTGGC
TTTCAAATCGCTGTCCATGTCGACTGATAACT
BS12104.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:27:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12752-PA | 402 | Nxt1-RA | 1..402 | 418..17 | 2010 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:50:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nxt1-RA | 527 | CG12752-RA | 26..429 | 420..17 | 2020 | 100 | Minus |
| Nxt1-RB | 540 | CG12752-RB | 26..442 | 420..17 | 1880 | 96.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:49:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23811419..23811724 | 17..322 | 1530 | 100 | Plus |
| 2R | 25286936 | 2R | 23811795..23811881 | 323..409 | 435 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 11:50:04 has no hits.
BS12104.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:57 Download gff for
BS12104.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12752-PA | 1..402 | 17..418 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:37:17 Download gff for
BS12104.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nxt1-RA | 26..429 | 17..420 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:42:32 Download gff for
BS12104.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nxt1-RA | 26..429 | 17..420 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:42:32 Download gff for
BS12104.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23811419..23811724 | 17..322 | 100 | <- | Plus |
| 2R | 23811795..23811883 | 323..412 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:37:17 Download gff for
BS12104.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19698942..19699247 | 17..322 | 100 | <- | Plus |
| arm_2R | 19699318..19699406 | 323..412 | 98 | | Plus |
BS12104.5prime Sequence
432 bp (432 high quality bases) assembled on 2006-06-16
> BS12104.5prime
GAAGTTATCAGTCGACATGGACAGCGATTTGAAAGCCAAGGTCGAGAGCT
GCGCCCGTACGGCGGATACCTTCACACGCCTGTACTACGCCTCCGTGGAC
AACCGACGCCAACAAATTGGACGCCTCTATTTGGACAATGCTACGCTTAG
CTGGAATGGAAACGGGGCCATCGGCCGCCAGATGATCGAGAGCTACTTTC
AGGAGCTGCCATCCTCAAACCACCAGTTGAACACCCTGGACGCGCAGCCT
ATTGTGGATCAGGCTGTGTCCAACCAGCTGGCCTACCTCATCATGGCCAG
CGGCTCCGTCAAGTTCGCAGATCAGCAGTTACGCAAATTTCAGCAGACTT
TCATCGTTACCGCCGAGAATGATAAATGGAAGGTCGTCTCCGATTGCTAC
CGAATGCAGGAGGTCTGAAAGCTTTCTAGACC
BS12104.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:27:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12752-PA | 402 | Nxt1-RA | 1..402 | 17..418 | 2010 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:06:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nxt1-RA | 527 | CG12752-RA | 26..429 | 15..418 | 2020 | 100 | Plus |
| Nxt1-RB | 540 | CG12752-RB | 26..442 | 15..418 | 1880 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:06:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23811419..23811724 | 418..113 | 1530 | 100 | Minus |
| 2R | 25286936 | 2R | 23811795..23811881 | 112..26 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:06:22 has no hits.
BS12104.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:58 Download gff for
BS12104.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12752-PA | 1..402 | 17..418 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:44:17 Download gff for
BS12104.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nxt1-RA | 26..429 | 15..418 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:21:55 Download gff for
BS12104.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nxt1-RA | 26..429 | 15..418 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:21:55 Download gff for
BS12104.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23811419..23811724 | 113..418 | 100 | <- | Minus |
| 2R | 23811795..23811883 | 23..112 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:44:17 Download gff for
BS12104.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19699318..19699406 | 23..112 | 98 | | Minus |
| arm_2R | 19698942..19699247 | 113..418 | 100 | <- | Minus |
BS12104.complete Sequence
434 bp assembled on 2006-11-01
> BS12104.complete
GAAGTTATCAGTCGACATGGACAGCGATTTGAAAGCCAAGGTCGAGAGCT
GCGCCCGTACGGCGGATACCTTCACACGCCTGTACTACGCCTCCGTGGAC
AACCGACGCCAACAAATTGGACGCCTCTATTTGGACAATGCTACGCTTAG
CTGGAATGGAAACGGGGCCATCGGCCGCCAGATGATCGAGAGCTACTTTC
AGGAGCTGCCATCCTCAAACCACCAGTTGAACACCCTGGACGCGCAGCCT
ATTGTGGATCAGGCTGTGTCCAACCAGCTGGCCTACCTCATCATGGCCAG
CGGCTCCGTCAAGTTCGCAGATCAGCAGTTACGCAAATTTCAGCAGACTT
TCATCGTTACCGCCGAGAATGATAAATGGAAGGTCGTCTCCGATTGCTAC
CGAATGCAGGAGGTCTGAAAGCTTTCTAGACCAT
BS12104.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:37:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nxt1-RA | 402 | CG12752-PA | 1..402 | 17..418 | 2010 | 100 | Plus |
| Nxt1-RB | 147 | CG12752-PB | 1..147 | 17..150 | 505 | 91.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:37:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nxt1-RA | 527 | CG12752-RA | 26..429 | 15..418 | 2020 | 100 | Plus |
| Nxt1-RB | 540 | CG12752-RB | 26..442 | 15..418 | 1855 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:37:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23811419..23811724 | 418..113 | 1530 | 100 | Minus |
| 2R | 25286936 | 2R | 23811795..23811881 | 112..26 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:37:03 has no hits.
BS12104.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:47:28 Download gff for
BS12104.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nxt1-RA | 1..402 | 17..418 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:35:25 Download gff for
BS12104.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nxt1-RA | 25..428 | 15..418 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:24:21 Download gff for
BS12104.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nxt1-RA | 28..428 | 17..417 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:47:29 Download gff for
BS12104.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nxt1-RA | 25..428 | 15..418 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:01:42 Download gff for
BS12104.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nxt1-RA | 28..428 | 17..417 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:01:42 Download gff for
BS12104.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23811420..23811724 | 113..417 | 100 | <- | Minus |
| 2R | 23811795..23811883 | 23..112 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:24:21 Download gff for
BS12104.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19698943..19699247 | 113..417 | 100 | <- | Minus |
| arm_2R | 19699318..19699406 | 23..112 | 98 | | Minus |
BS12104.pep Sequence
Translation from 16 to 417
> BS12104.pep
MDSDLKAKVESCARTADTFTRLYYASVDNRRQQIGRLYLDNATLSWNGNG
AIGRQMIESYFQELPSSNHQLNTLDAQPIVDQAVSNQLAYLIMASGSVKF
ADQQLRKFQQTFIVTAENDKWKVVSDCYRMQEV*
BS12104.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:06:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nxt1-PA | 133 | CG12752-PA | 1..133 | 1..133 | 683 | 100 | Plus |
| Nxt1-PB | 48 | CG12752-PB | 1..32 | 1..32 | 163 | 100 | Plus |
