BS12105.complete Sequence
1598 bp assembled on 2007-10-17
GenBank Submission: FJ638842
> BS12105.complete
GAAGTTATCAGTCGACATGCCGCCAATCTTTCTGCTCGTATGTCTTCTTC
CTGGTTACTCGGAAGGTGCTCGCATCCTGGCAGTGTTCCCTTTGCCAAGT
TCTTCGCATTACTTTTTCGCCTTACCCTACCTTAAGAGTTTGGCCTCCCT
GGGCCACGAAATAACCAGTGTAAGTCCGTATCCACAAAGGGAGCCGTTTA
GGAATATACACGATATTCCAGTTCCCGAGGTTTTCGAAAACTTTAATGAG
GTCCTTAGGATTGCATCTACTCCCAGGAGCACCTGGCAAAGTAGTGATTT
CATCAACGAATATGTCCTTAATCTTACGAAGACAGTGCTGAATAACGAGG
GCGTAAGGCGCGATATTCTAGGCCCACAGAAGCCCCATTTCGATCTTGTG
ATAATGGATCTCTGGCGAATGGACGTGCTCAGTGGCCTGGCTGCCTATTT
TGATGCCCCGATCATCGGAATGGCTTCCTATGGCACCGACTGGAAGATTG
ACGAACTGATGGGCAACGTCTCACCGATTTCTTACCTGCAGTCTCCCTCT
TCTCGATTCTACGATCTGGAGGCCTATGGAGAGCGGTTGTTGCACCTGAT
GGAGCGAACTTTTTCTTATATGAACTATAAATGGCGACATGTGAGAAAAC
AGGAGACTCTCTATAGTCAATTTTTCCCCAGCGTCGCTGAGCGGAAACCC
TTGTCAGAGATATCCCGGAACTTTGATTTGGTCCTGGTCAATCAGCACTT
CACACTGGGTCCTCCTCGTCCTTATGTTCCGAATATGATCCAGGTGGGTG
GTCTGCATGTCGATCACAGCACAGAGGCTCTGTCCGCCGAACTGGACCAC
TTTATCCAAGGTGCTGGTGAATCGGGGGTAATCTATTTCTCACTGGGAAC
CAATGTCAAAAGCAAATCGCTATCCGAGGATCGTCGAAAGGTATTGCTCG
AGACTTTCGCCAGCTTGCCACAGCGAATCGTTTGGAAGTTCGAAGATGAA
CTGCTGCCAGGAAAACCCCCCAATGTTTTCATTAGTAAGTGGTTCCCGCA
GCAGGCCATCCTGGCCCATCCCAATGTAAAACTCTTTATAACCCACGGCG
GGCTACTGAGCACTATAGAGAGTATTCACCATGGAAAGCCCATGTTGGGG
TTGCCCTGCCTATTCGATCAGTTTCGAAATATGGATCATGTCCGGCAAGT
GGGTCTTGGTTTGGTCCTCAACATAAAGCAAATGACCAGTGAGGAATTTA
GGTCTACAATTATACGGCTGCTAACGAACAAGAGTTTCGAAGAAACGGCA
AGGATCACGGCTGCCAGATATCGGGATCAACCAATGAAGCCCATGGAAAC
GGCGATCTGGTGGACCGAGTATGTCCTGTCTCACAAGGGAGCTGCTCACA
TGCAAGTCGCCGGCAAGGACTTGGGTTTTGTAAGATACCACAGTCTAGAT
GTCTTCGGCACTTTTTTGGTTGGCGCTTTAGTTATCCTGGGAATTGTTAC
ATATCTGTTGGTTATGACCTTAAGGAAATGCCTCTTTTTAATAAAAAGGG
GTAAATGTGAGGCAATAAAGAAGATTCAGTAAAAGCTTTCTAGACCAT
BS12105.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:11:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31002-RA | 1566 | CG31002-PA | 1..1566 | 17..1582 | 7830 | 100 | Plus |
| Ugt86De-RA | 1584 | CG6653-PA | 740..1470 | 735..1465 | 430 | 70.6 | Plus |
| Ugt86Dg-RB | 1584 | CG17200-PB | 728..1455 | 735..1462 | 400 | 70.3 | Plus |
| Ugt86De-RA | 1584 | CG6653-PA | 439..556 | 434..551 | 305 | 83.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:11:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31002-RA | 1663 | CG31002-RA | 51..1617 | 17..1583 | 7835 | 100 | Plus |
| Ugt86De-RA | 1739 | CG6653-RA | 758..1488 | 735..1465 | 430 | 70.6 | Plus |
| Ugt86Dg-RB | 1584 | CG17200-RB | 728..1455 | 735..1462 | 400 | 70.3 | Plus |
| Ugt86De-RA | 1739 | CG6653-RA | 457..574 | 434..551 | 305 | 83.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:11:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31393628..31394963 | 1583..248 | 6680 | 100 | Minus |
| 3R | 32079331 | 3R | 31395023..31395254 | 248..17 | 1160 | 100 | Minus |
| 3R | 32079331 | 3R | 11166428..11167158 | 1465..735 | 430 | 70.6 | Minus |
| 3R | 32079331 | 3R | 11164552..11165279 | 1462..735 | 400 | 70.3 | Minus |
| 3R | 32079331 | 3R | 11168979..11169193 | 1170..956 | 355 | 77.7 | Minus |
| 3R | 32079331 | 3R | 11167342..11167459 | 551..434 | 305 | 83.9 | Minus |
| 3R | 32079331 | 3R | 11171382..11171555 | 1156..983 | 270 | 77 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:11:21 has no hits.
BS12105.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:14:41 Download gff for
BS12105.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31002-RA | 1..1566 | 17..1582 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:45:34 Download gff for
BS12105.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31002-RA | 36..1615 | 10..1589 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:16:16 Download gff for
BS12105.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31002-RA | 51..1614 | 17..1580 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:30:59 Download gff for
BS12105.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31002-RA | 45..1608 | 17..1580 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:15:15 Download gff for
BS12105.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31002-RA | 51..1614 | 17..1580 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:15:15 Download gff for
BS12105.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31393631..31394962 | 249..1580 | 100 | <- | Minus |
| 3R | 31395023..31395254 | 17..248 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:16:16 Download gff for
BS12105.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27220745..27220976 | 17..248 | 100 | | Minus |
| arm_3R | 27219353..27220684 | 249..1580 | 100 | <- | Minus |
BS12105.pep Sequence
Translation from 16 to 1581
> BS12105.pep
MPPIFLLVCLLPGYSEGARILAVFPLPSSSHYFFALPYLKSLASLGHEIT
SVSPYPQREPFRNIHDIPVPEVFENFNEVLRIASTPRSTWQSSDFINEYV
LNLTKTVLNNEGVRRDILGPQKPHFDLVIMDLWRMDVLSGLAAYFDAPII
GMASYGTDWKIDELMGNVSPISYLQSPSSRFYDLEAYGERLLHLMERTFS
YMNYKWRHVRKQETLYSQFFPSVAERKPLSEISRNFDLVLVNQHFTLGPP
RPYVPNMIQVGGLHVDHSTEALSAELDHFIQGAGESGVIYFSLGTNVKSK
SLSEDRRKVLLETFASLPQRIVWKFEDELLPGKPPNVFISKWFPQQAILA
HPNVKLFITHGGLLSTIESIHHGKPMLGLPCLFDQFRNMDHVRQVGLGLV
LNIKQMTSEEFRSTIIRLLTNKSFEETARITAARYRDQPMKPMETAIWWT
EYVLSHKGAAHMQVAGKDLGFVRYHSLDVFGTFLVGALVILGIVTYLLVM
TLRKCLFLIKRGKCEAIKKIQ*
BS12105.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:32:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31002-PA | 521 | CG31002-PA | 1..521 | 1..521 | 2729 | 100 | Plus |
| Ugt86De-PA | 527 | CG6653-PA | 11..526 | 4..520 | 1743 | 61.7 | Plus |
| Ugt86Dg-PB | 527 | CG17200-PB | 8..506 | 5..505 | 1684 | 60.3 | Plus |
| Ugt35b-PA | 516 | CG6649-PA | 6..500 | 4..498 | 1451 | 53.7 | Plus |
| Ugt35a-PA | 537 | CG6644-PA | 30..513 | 16..506 | 1052 | 44.6 | Plus |
