BS12107.complete Sequence
1997 bp assembled on 2009-12-07
GenBank Submission: KX805563
> BS12107.complete
GAAGTTATCAGTCGACATGAAATCCAATCCGGCCTCGGATCACGTCTACT
TCAACGACGGATTCAAGTGCTCCACGATCAGCATCAGCACCAATCTCACC
GAACCCAATGGGAGCAGCAACAGCGTGGGATCCCAGGGATCCAAGGAGTT
TATACTCACTGAAGACGGCAAGAAGGTGAAGCCAACAGTGAGCACACTGG
ACTGCACACGCAGTTGGCTGCAGGATTGCCAGCGGCGCACCTTCAATCGC
AAGACCCTGCACAAGAGACTCCCGATCCTCGGATGGCTCCCCAAGTACAA
CAGCCAGGATGCTGTGGGCGACCTGGTGGCGGGCATCACAGTTGGTCTCA
CCGTCATACCACAGGCACTGGCCTATGCGGGAATAGCAGGACTGCCCGTA
GCCTATGGCTTGTATGCCTCCTTTGTGGGCTGCTTTGTGTACATATTCCT
GGGCAGCTGCAAGGATGTACCCATGGGGCCATCTGCGATTGTGGCCCTGC
TTACTTATCAGGCTGCTCAAGGATCTTGGCAGAAATCGGTGTTGCTCTGC
CTGCTCAGTGGAATTGTGGAGCTGCTGATGGGCCTCTTCGGACTGGGCTT
CCTGATTGACTTCGTCTCCGGACCAGTTTCCTCGGGCTTCACCTCCGCCG
TCTCGCTGATCATCCTCACCTCGCAGATCCAAAGTGTGCTGGGCATCACG
GCCAAGGGCAACACCTTCGTGGAGATCTGGACGCAAGTCTTCCACAACAT
CGAGCACACAAGGGCAGGGGACACGGTACTAGGGCTAACCTGCATTGTCA
TCCTGCTGTTGATGCGCAGTCTGTCTTCCTGTCGAATTGGACCAGTCGAC
GAGAAGGAATGCTCATCCTTCCAGCGGGCTGTGAACAAGATCCTTTGGAT
CGTGGGTACTGCTCGAAATGCCATTCTGGTGGTCGTTTGCTGCATCATGG
GCTATATGCTCCACACCGAGGAGCACGGAGCTCCGTTTCGAGTGGTGGGA
GAGATACCACCCGGGCTCCCCAGCATCCAGTTGCCACCCACATCGTTGAC
TGCCAATGAAACCAGCAATGGAGTGGCCGAGGGATTCGTGGAAATGGTTC
ACAGCATGGGTTCCGGCTTGGTGGTGATTCCCTTGATCTCGCTCATGGAA
AACATAGCCATCTGCAAAGCGTTTGCCAATGGCAAGCCAGTGGATGCCTC
GCAGGAATTGATTGCCATTGGAACGGCCAACATCTTCAACTCTTTTGTCC
AAGCCTTTCCGGGCACTGGAGCCCTTAGTCGTGGAGCAGTCAATAATGCC
AGTGGTGTCCGTACTCCCCTGAGCAATATTTACTCCGGTGGCCTGGTCAT
GATTGCCCTGCTCTTCCTCACGCCCTACTTCTACTTCATTCCACGCCCTA
CCCTGGCAGCCATCATTATATCCGCCGTGGTCTTCATGATTGAAGTAAAG
GTGGTCAAGCCCATGTGGAGATCGAAGAAAAGTGATCTGGTGCCTGGAGT
TGGAACCTTTGTGGCCTGCCTTGTCTTGCCGCTGGAGTGGGGCATCCTCA
TTGGAGTGGGACTCAATGTCATCTTTATCCTCTACCATGCTGCGCGTCCC
AAGCTGAGCACCGAGCTACTGACCACACAGTCGGGTGTGGAGTACTCAAT
GATCACGCCAGATCGATGCCTGATCTTCCCGTCTGTGGATTATGTGAGGA
ATCTGGTCAACAAGCAGTCCATTAGGCAAAATGTCCCAGTGGTCATAGAT
GCGTCGCATGTCTACGGGGCTGACTTCACAACGGCCACGGTTATAGACTC
GCTGATCAGTGATTTCAATCAGCGAGGACAACTGCTCTTCTTCTACAACC
TCAAACCGAGTATCTGCTCCATTTTCGAGCACGTGTCGGCGGCCCAGTTC
GTGGTCTACTACCAGGAGCAGCAGTTGGATGAGCTGCTCAAGGAGCGCAA
CTATGTGCAGAAGCGGCTCGAGACGGCCTAAAAGCTTTCTAGACCAT
BS12107.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:30:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Esp-RB | 1965 | CG7005-PB | 1..1965 | 17..1981 | 9810 | 99.9 | Plus |
| Esp-RA | 1965 | CG7005-PA | 1..1965 | 17..1981 | 9810 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:30:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Esp-RB | 2732 | CG7005-RB | 589..2553 | 17..1981 | 9810 | 99.9 | Plus |
| Esp-RA | 2371 | CG7005-RA | 228..2192 | 17..1981 | 9810 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:30:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24848533..24849304 | 404..1175 | 3845 | 99.9 | Plus |
| 3R | 32079331 | 3R | 24849731..24850233 | 1479..1981 | 2515 | 100 | Plus |
| 3R | 32079331 | 3R | 24849365..24849668 | 1175..1478 | 1520 | 100 | Plus |
| 3R | 32079331 | 3R | 24848215..24848462 | 156..403 | 1240 | 100 | Plus |
| 3R | 32079331 | 3R | 24847238..24847376 | 17..155 | 695 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 10:30:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6752..6824 | 52..124 | 113 | 61.6 | Plus |
BS12107.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:49:29 Download gff for
BS12107.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Esp-RA | 225..2187 | 17..1979 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:18:57 Download gff for
BS12107.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Esp-RA | 228..2190 | 17..1979 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:03:32 Download gff for
BS12107.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Esp-RA | 225..2187 | 17..1979 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:23:36 Download gff for
BS12107.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Esp-RA | 228..2190 | 17..1979 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:23:36 Download gff for
BS12107.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24849366..24849668 | 1176..1478 | 100 | -> | Plus |
| 3R | 24847238..24847376 | 17..155 | 100 | -> | Plus |
| 3R | 24848215..24848462 | 156..403 | 100 | -> | Plus |
| 3R | 24848533..24849304 | 404..1175 | 99 | -> | Plus |
| 3R | 24849731..24850231 | 1479..1979 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:18:57 Download gff for
BS12107.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20672960..20673098 | 17..155 | 100 | -> | Plus |
| arm_3R | 20673937..20674184 | 156..403 | 100 | -> | Plus |
| arm_3R | 20674255..20675026 | 404..1175 | 99 | -> | Plus |
| arm_3R | 20675088..20675390 | 1176..1478 | 100 | -> | Plus |
| arm_3R | 20675453..20675953 | 1479..1979 | 100 | | Plus |
BS12107.pep Sequence
Translation from 16 to 1980
> BS12107.pep
MKSNPASDHVYFNDGFKCSTISISTNLTEPNGSSNSVGSQGSKEFILTED
GKKVKPTVSTLDCTRSWLQDCQRRTFNRKTLHKRLPILGWLPKYNSQDAV
GDLVAGITVGLTVIPQALAYAGIAGLPVAYGLYASFVGCFVYIFLGSCKD
VPMGPSAIVALLTYQAAQGSWQKSVLLCLLSGIVELLMGLFGLGFLIDFV
SGPVSSGFTSAVSLIILTSQIQSVLGITAKGNTFVEIWTQVFHNIEHTRA
GDTVLGLTCIVILLLMRSLSSCRIGPVDEKECSSFQRAVNKILWIVGTAR
NAILVVVCCIMGYMLHTEEHGAPFRVVGEIPPGLPSIQLPPTSLTANETS
NGVAEGFVEMVHSMGSGLVVIPLISLMENIAICKAFANGKPVDASQELIA
IGTANIFNSFVQAFPGTGALSRGAVNNASGVRTPLSNIYSGGLVMIALLF
LTPYFYFIPRPTLAAIIISAVVFMIEVKVVKPMWRSKKSDLVPGVGTFVA
CLVLPLEWGILIGVGLNVIFILYHAARPKLSTELLTTQSGVEYSMITPDR
CLIFPSVDYVRNLVNKQSIRQNVPVVIDASHVYGADFTTATVIDSLISDF
NQRGQLLFFYNLKPSICSIFEHVSAAQFVVYYQEQQLDELLKERNYVQKR
LETA*
BS12107.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:38:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Esp-PB | 654 | CG7005-PB | 1..654 | 1..654 | 3346 | 100 | Plus |
| Esp-PA | 654 | CG7005-PA | 1..654 | 1..654 | 3346 | 100 | Plus |
| CG9717-PA | 638 | CG9717-PA | 44..622 | 56..631 | 1665 | 54.6 | Plus |
| CG9702-PB | 676 | CG9702-PB | 15..639 | 29..642 | 1596 | 50 | Plus |
| CG9702-PA | 676 | CG9702-PA | 15..639 | 29..642 | 1596 | 50 | Plus |
