Clone Sequence Records
BS12108.5prime Sequence
381 bp (381 high quality bases) assembled on 2006-06-16
> BS12108.5prime
GAAGTTATCAGTCGACATGAGTGCCGTGAACGATCCGCTGGAACTTTTGA
CGAACAAGGGCACCCACGAGCCTTCTTTCCTCTCGCCGATATGGAATCCG
ATTGCCTGCGGTGTGGCCGGCGTGGGCGCGGCCATTTTCATCAACTGGGG
CTTCCGTAAGCCCGTGTTTTCCGGCATCCAGAAGCACATCGCCTTCGGAG
CTATCGGCGTCGGCGCAGGAGCTTATTTCGATCAGAAGAGGAACGAGTAC
CTGGCCAAAAGGGACGCCGTCCTCCGGCACTACATCGAACTGCATCCCGA
CGATTTCCCGGTGAAGGAACGCAAGACCTATGGCCAAGTGCTGGAGAGTT
GGGTGCCAGTGCGCTAAAAGCTTTCTAGACC
BS12108.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:18:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12400-PA | 351 | CG12400-RA | 1..351 | 17..367 | 1755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:30:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12400-RB | 762 | CG12400-RB | 163..515 | 15..367 | 1765 | 100 | Plus |
CG12400-RA | 458 | CG12400-RA | 36..388 | 15..367 | 1765 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:30:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3145527..3145686 | 174..15 | 800 | 100 | Minus |
2L | 23513712 | 2L | 3145305..3145449 | 317..173 | 725 | 100 | Minus |
2L | 23513712 | 2L | 3145200..3145250 | 367..317 | 255 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:30:46 has no hits.
BS12108.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:58 Download gff for
BS12108.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12400-PA | 1..351 | 17..367 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:31:37 Download gff for
BS12108.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12400-RA | 33..388 | 12..367 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:50:49 Download gff for
BS12108.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12400-RA | 33..388 | 12..367 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:50:49 Download gff for
BS12108.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3145200..3145249 | 318..367 | 100 | <- | Minus |
2L | 3145305..3145448 | 174..317 | 100 | <- | Minus |
2L | 3145528..3145689 | 12..173 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:31:37 Download gff for
BS12108.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3145200..3145249 | 318..367 | 100 | <- | Minus |
arm_2L | 3145305..3145448 | 174..317 | 100 | <- | Minus |
arm_2L | 3145528..3145689 | 12..173 | 99 | | Minus |
BS12108.complete Sequence
382 bp assembled on 2008-08-15
GenBank Submission: FJ637070
> BS12108.complete
GAAGTTATCAGTCGACATGAGTGCCGTGAACGATCCGCTGGAACTTTTGA
CGAACAAGGGCACCCACGAGCCTTCTTTCCTCTCGCCGATATGGAATCCG
ATTGCCTGCGGTGTGGCCGGCGTGGGCGCGGCCATTTTCATCAACTGGGG
CTTCCGTAAGCCCGTGTTTTCCGGCATCCAGAAGCACATCGCCTTCGGAG
CTATCGGCGTCGGCGCAGGAGCTTATTTCGATCAGAAGAGGAACGAGTAC
CTGGCCAAAAGGGACGCCGTCCTCCGGCACTACATCGAACTGCATCCCGA
CGATTTCCCGGTGAAGGAACGCAAGACCTATGGCCAAGTGCTGGAGAGTT
GGGTGCCAGTGCGCTTAAAAGCTTTCTAGACC
BS12108.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:48:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12400-RB | 351 | CG12400-PB | 1..349 | 17..365 | 1745 | 100 | Plus |
CG12400-RA | 351 | CG12400-PA | 1..349 | 17..365 | 1745 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:48:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12400-RB | 762 | CG12400-RB | 163..513 | 15..365 | 1755 | 100 | Plus |
CG12400-RA | 458 | CG12400-RA | 36..386 | 15..365 | 1755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:48:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3145527..3145686 | 174..15 | 800 | 100 | Minus |
2L | 23513712 | 2L | 3145305..3145449 | 317..173 | 725 | 100 | Minus |
2L | 23513712 | 2L | 3145202..3145250 | 365..317 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:48:51 has no hits.
BS12108.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:59:59 Download gff for
BS12108.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12400-RA | 31..386 | 12..368 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:41:50 Download gff for
BS12108.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12400-RA | 38..386 | 17..366 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:03:05 Download gff for
BS12108.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12400-RA | 36..384 | 17..366 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:31:30 Download gff for
BS12108.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12400-RA | 38..386 | 17..366 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:31:30 Download gff for
BS12108.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3145201..3145249 | 318..366 | 97 | <- | Minus |
2L | 3145305..3145448 | 174..317 | 100 | <- | Minus |
2L | 3145528..3145684 | 17..173 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:41:50 Download gff for
BS12108.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3145528..3145684 | 17..173 | 100 | | Minus |
arm_2L | 3145201..3145249 | 318..366 | 97 | <- | Minus |
arm_2L | 3145305..3145448 | 174..317 | 100 | <- | Minus |
BS12108.pep Sequence
Translation from 16 to 378
> BS12108.pep
MSAVNDPLELLTNKGTHEPSFLSPIWNPIACGVAGVGAAIFINWGFRKPV
FSGIQKHIAFGAIGVGAGAYFDQKRNEYLAKRDAVLRHYIELHPDDFPVK
ERKTYGQVLESWVPVRLKAF*
BS12108.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:31:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12400-PB | 116 | CG12400-PB | 1..116 | 1..116 | 624 | 100 | Plus |
CG12400-PA | 116 | CG12400-PA | 1..116 | 1..116 | 624 | 100 | Plus |