Clone BS12108 Report

Search the DGRC for BS12108

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:121
Well:8
Vector:pDNR-Dual
Associated Gene/TranscriptCG12400-RA
Protein status:BS12108.pep: Imported from assembly
Sequenced Size:382

Clone Sequence Records

BS12108.5prime Sequence

381 bp (381 high quality bases) assembled on 2006-06-16

> BS12108.5prime
GAAGTTATCAGTCGACATGAGTGCCGTGAACGATCCGCTGGAACTTTTGA
CGAACAAGGGCACCCACGAGCCTTCTTTCCTCTCGCCGATATGGAATCCG
ATTGCCTGCGGTGTGGCCGGCGTGGGCGCGGCCATTTTCATCAACTGGGG
CTTCCGTAAGCCCGTGTTTTCCGGCATCCAGAAGCACATCGCCTTCGGAG
CTATCGGCGTCGGCGCAGGAGCTTATTTCGATCAGAAGAGGAACGAGTAC
CTGGCCAAAAGGGACGCCGTCCTCCGGCACTACATCGAACTGCATCCCGA
CGATTTCCCGGTGAAGGAACGCAAGACCTATGGCCAAGTGCTGGAGAGTT
GGGTGCCAGTGCGCTAAAAGCTTTCTAGACC

BS12108.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:18:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG12400-PA 351 CG12400-RA 1..351 17..367 1755 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:30:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG12400-RB 762 CG12400-RB 163..515 15..367 1765 100 Plus
CG12400-RA 458 CG12400-RA 36..388 15..367 1765 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:30:40
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3145527..3145686 174..15 800 100 Minus
2L 23513712 2L 3145305..3145449 317..173 725 100 Minus
2L 23513712 2L 3145200..3145250 367..317 255 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:30:46 has no hits.

BS12108.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:58 Download gff for BS12108.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12400-PA 1..351 17..367 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:31:37 Download gff for BS12108.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12400-RA 33..388 12..367 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:50:49 Download gff for BS12108.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12400-RA 33..388 12..367 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:50:49 Download gff for BS12108.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 3145200..3145249 318..367 100 <- Minus
2L 3145305..3145448 174..317 100 <- Minus
2L 3145528..3145689 12..173 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:31:37 Download gff for BS12108.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3145200..3145249 318..367 100 <- Minus
arm_2L 3145305..3145448 174..317 100 <- Minus
arm_2L 3145528..3145689 12..173 99   Minus

BS12108.complete Sequence

382 bp assembled on 2008-08-15

GenBank Submission: FJ637070

> BS12108.complete
GAAGTTATCAGTCGACATGAGTGCCGTGAACGATCCGCTGGAACTTTTGA
CGAACAAGGGCACCCACGAGCCTTCTTTCCTCTCGCCGATATGGAATCCG
ATTGCCTGCGGTGTGGCCGGCGTGGGCGCGGCCATTTTCATCAACTGGGG
CTTCCGTAAGCCCGTGTTTTCCGGCATCCAGAAGCACATCGCCTTCGGAG
CTATCGGCGTCGGCGCAGGAGCTTATTTCGATCAGAAGAGGAACGAGTAC
CTGGCCAAAAGGGACGCCGTCCTCCGGCACTACATCGAACTGCATCCCGA
CGATTTCCCGGTGAAGGAACGCAAGACCTATGGCCAAGTGCTGGAGAGTT
GGGTGCCAGTGCGCTTAAAAGCTTTCTAGACC

BS12108.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:48:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG12400-RB 351 CG12400-PB 1..349 17..365 1745 100 Plus
CG12400-RA 351 CG12400-PA 1..349 17..365 1745 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:48:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG12400-RB 762 CG12400-RB 163..513 15..365 1755 100 Plus
CG12400-RA 458 CG12400-RA 36..386 15..365 1755 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:48:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3145527..3145686 174..15 800 100 Minus
2L 23513712 2L 3145305..3145449 317..173 725 100 Minus
2L 23513712 2L 3145202..3145250 365..317 245 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:48:51 has no hits.

BS12108.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:59:59 Download gff for BS12108.complete
Subject Subject Range Query Range Percent Splice Strand
CG12400-RA 31..386 12..368 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:41:50 Download gff for BS12108.complete
Subject Subject Range Query Range Percent Splice Strand
CG12400-RA 38..386 17..366 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:03:05 Download gff for BS12108.complete
Subject Subject Range Query Range Percent Splice Strand
CG12400-RA 36..384 17..366 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:31:30 Download gff for BS12108.complete
Subject Subject Range Query Range Percent Splice Strand
CG12400-RA 38..386 17..366 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:31:30 Download gff for BS12108.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3145201..3145249 318..366 97 <- Minus
2L 3145305..3145448 174..317 100 <- Minus
2L 3145528..3145684 17..173 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:41:50 Download gff for BS12108.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3145528..3145684 17..173 100   Minus
arm_2L 3145201..3145249 318..366 97 <- Minus
arm_2L 3145305..3145448 174..317 100 <- Minus

BS12108.pep Sequence

Translation from 16 to 378

> BS12108.pep
MSAVNDPLELLTNKGTHEPSFLSPIWNPIACGVAGVGAAIFINWGFRKPV
FSGIQKHIAFGAIGVGAGAYFDQKRNEYLAKRDAVLRHYIELHPDDFPVK
ERKTYGQVLESWVPVRLKAF*

BS12108.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:31:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG12400-PB 116 CG12400-PB 1..116 1..116 624 100 Plus
CG12400-PA 116 CG12400-PA 1..116 1..116 624 100 Plus