Clone BS12113 Report

Search the DGRC for BS12113

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:121
Well:13
Vector:pDNR-Dual
Associated Gene/TranscriptTsp74F-RA
Protein status:BS12113.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12113.3prime Sequence

741 bp (741 high quality bases) assembled on 2006-06-16

> BS12113.3prime
ATGGTCTAGAAAGCTTCTATTCGATCATATTGAATAGTAGACAGGAGAAT
ATCATGCCAAAGATCATCAGTATGGCCACCGCTATGGATGTACCTCCAAT
AACCGCCGCGTGATCCCTGATGAAGTTGGTCGTCACATAGAGGCATCCCT
GGTTGTACAGATTCGTAATGGTCGGGAAGATTGTGCACTCCTTACGCTGT
CCACCGAAAAGCTCCTGGCAACAGGACTCAGGCACTGGTCCGTACCTATT
CCAGTCGTGCCACGTATCCACTCCGCAGCACTGTAGTCGCTCCTGGGTCA
AATCCCAGGCCTGGGTGATCTCCCTCCTGCTTCCGTATAGTGCCATCGTG
GAACGCATTTCCTGCCGCATGGTCTGCTGAACTCGTTCGCGGAACACGTA
ACCCAAGACACCGCCAATTAGCATGGTCACGAAAACTAGGGCCACTATTA
TGAAATATGTTAGGAGGAGGCATTTGACTTCTTTTCCGGCACCAACACAA
CCCAAAAAGGACACCAGACAAATGATAATCGATGTAACCAGCAGGACGTA
GACAGCACCCGAGAAAAGATTTGTACCGAGCAACTCATTGACGAAACTCC
GATCCACCAGAGTCCACAGGGTGAGACAAAACACAATCGCTCCACCCACG
AATATCACAAAGTTGGCTATGAAAAGACTGTACTTGACGAACTGCCCGCA
GCAGTCCATTCGCGAACTGAAGCCCATGTCGACTGATAACT

BS12113.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:27:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG5492-PA 711 Tsp74F-RA 1..711 727..17 3555 100 Minus
CG5492-PB 711 Tsp74F-RB 1..711 727..17 3555 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:54:55
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp74F-RB 1519 CG5492-RB 390..1104 731..17 3560 99.9 Minus
Tsp74F-RA 1414 CG5492-RA 285..999 731..17 3560 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:54:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17892357..17892655 65..363 1495 100 Plus
3L 28110227 3L 17893031..17893222 458..649 960 100 Plus
3L 28110227 3L 17892716..17892812 361..457 485 100 Plus
3L 28110227 3L 17893297..17893381 647..731 410 98.8 Plus
3L 28110227 3L 17892235..17892283 17..65 245 100 Plus
Blast to na_te.dros performed on 2015-02-10 20:54:52 has no hits.

BS12113.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:59 Download gff for BS12113.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5492-PB 1..711 17..727 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:22:39 Download gff for BS12113.3prime
Subject Subject Range Query Range Percent Splice Strand
Tsp74F-RA 282..1002 13..734 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:30:31 Download gff for BS12113.3prime
Subject Subject Range Query Range Percent Splice Strand
Tsp74F-RA 282..1002 13..734 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:30:31 Download gff for BS12113.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 17892232..17892282 13..64 96 <- Plus
3L 17892357..17892653 65..361 100 <- Plus
3L 17892717..17892812 362..457 100 <- Plus
3L 17893031..17893222 458..649 100 <- Plus
3L 17893300..17893384 650..734 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:22:39 Download gff for BS12113.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17885332..17885382 13..64 96 <- Plus
arm_3L 17885457..17885753 65..361 100 <- Plus
arm_3L 17885817..17885912 362..457 100 <- Plus
arm_3L 17886131..17886322 458..649 100 <- Plus
arm_3L 17886400..17886484 650..734 97   Plus

BS12113.5prime Sequence

741 bp (741 high quality bases) assembled on 2006-06-16

> BS12113.5prime
GAAGTTATCAGTCGACATGGGCTTCAGTTCGCGAATGGACTGCTGCGGGC
AGTTCGTCAAGTACAGTCTTTTCATAGCCAACTTTGTGATATTCGTGGGT
GGAGCGATTGTGTTTTGTCTCACCCTGTGGACTCTGGTGGATCGGAGTTT
CGTCAATGAGTTGCTCGGTACAAATCTTTTCTCGGGTGCTGTCTACGTCC
TGCTGGTTACATCGATTATCATTTGTCTGGTGTCCTTTTTGGGTTGTGTT
GGTGCCGGAAAAGAAGTCAAATGCCTCCTCCTAACATATTTCATAATAGT
GGCCCTAGTTTTCGTGACCATGCTAATTGGCGGTGTCTTGGGTTACGTGT
TCCGCGAACGAGTTCAGCAGACCATGCGGCAGGAAATGCGTTCCACGATG
GCACTATACGGAAGCAGGAGGGAGATCACCCAGGCCTGGGATTTGACCCA
GGAGCGACTACAGTGCTGCGGAGTGGATACGTGGCACGACTGGAATAGGT
ACGGACCAGTGCCTGAGTCCTGTTGCCAGGAGCTTTTCGGTGGACAGCGT
AAGGAGTGCACAATCTTCCCGACCATTACGAATCTGTACAACCAGGGATG
CCTCTATGTGACGACCAACTTCATCAGGGATCACGCGGCGGTTATTGGAG
GTACATCCATAGCGGTGGCCATACTGATGATCTTTGGCATGATATTCTCC
TGTCTACTATTCAATATGATCGAATAGAAGCTTTCTAGACC

BS12113.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:27:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG5492-PA 711 Tsp74F-RA 1..711 17..727 3555 100 Plus
CG5492-PB 711 Tsp74F-RB 1..711 17..727 3555 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:56:16
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp74F-RB 1519 CG5492-RB 390..1104 13..727 3560 99.9 Plus
Tsp74F-RA 1414 CG5492-RA 285..999 13..727 3560 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:56:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17892357..17892655 679..381 1495 100 Minus
3L 28110227 3L 17893031..17893222 286..95 960 100 Minus
3L 28110227 3L 17892716..17892812 383..287 485 100 Minus
3L 28110227 3L 17893297..17893381 97..13 410 98.8 Minus
3L 28110227 3L 17892235..17892283 727..679 245 100 Minus
Blast to na_te.dros performed on 2015-02-02 17:56:12 has no hits.

BS12113.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:59 Download gff for BS12113.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5492-PB 1..711 17..727 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:40:33 Download gff for BS12113.5prime
Subject Subject Range Query Range Percent Splice Strand
Tsp74F-RA 282..1002 10..731 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:12:23 Download gff for BS12113.5prime
Subject Subject Range Query Range Percent Splice Strand
Tsp74F-RA 282..1002 10..731 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:12:23 Download gff for BS12113.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 17892232..17892282 680..731 96 <- Minus
3L 17892357..17892653 383..679 100 <- Minus
3L 17892717..17892812 287..382 100 <- Minus
3L 17893031..17893222 95..286 100 <- Minus
3L 17893300..17893384 10..94 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:40:33 Download gff for BS12113.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17885332..17885382 680..731 96 <- Minus
arm_3L 17885457..17885753 383..679 100 <- Minus
arm_3L 17885817..17885912 287..382 100 <- Minus
arm_3L 17886131..17886322 95..286 100 <- Minus
arm_3L 17886400..17886484 10..94 97   Minus

BS12113.complete Sequence

743 bp assembled on 2006-11-01

GenBank Submission: FJ637072

> BS12113.complete
GAAGTTATCAGTCGACATGGGCTTCAGTTCGCGAATGGACTGCTGCGGGC
AGTTCGTCAAGTACAGTCTTTTCATAGCCAACTTTGTGATATTCGTGGGT
GGAGCGATTGTGTTTTGTCTCACCCTGTGGACTCTGGTGGATCGGAGTTT
CGTCAATGAGTTGCTCGGTACAAATCTTTTCTCGGGTGCTGTCTACGTCC
TGCTGGTTACATCGATTATCATTTGTCTGGTGTCCTTTTTGGGTTGTGTT
GGTGCCGGAAAAGAAGTCAAATGCCTCCTCCTAACATATTTCATAATAGT
GGCCCTAGTTTTCGTGACCATGCTAATTGGCGGTGTCTTGGGTTACGTGT
TCCGCGAACGAGTTCAGCAGACCATGCGGCAGGAAATGCGTTCCACGATG
GCACTATACGGAAGCAGGAGGGAGATCACCCAGGCCTGGGATTTGACCCA
GGAGCGACTACAGTGCTGCGGAGTGGATACGTGGCACGACTGGAATAGGT
ACGGACCAGTGCCTGAGTCCTGTTGCCAGGAGCTTTTCGGTGGACAGCGT
AAGGAGTGCACAATCTTCCCGACCATTACGAATCTGTACAACCAGGGATG
CCTCTATGTGACGACCAACTTCATCAGGGATCACGCGGCGGTTATTGGAG
GTACATCCATAGCGGTGGCCATACTGATGATCTTTGGCATGATATTCTCC
TGTCTACTATTCAATATGATCGAATAGAAGCTTTCTAGACCAT

BS12113.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:23:54
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp74F-RB 711 CG5492-PB 1..711 17..727 3555 100 Plus
Tsp74F-RA 711 CG5492-PA 1..711 17..727 3555 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:23:55
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp74F-RB 1519 CG5492-RB 390..1104 13..727 3560 99.9 Plus
Tsp74F-RA 1414 CG5492-RA 285..999 13..727 3560 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:23:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17892357..17892655 679..381 1495 100 Minus
3L 28110227 3L 17893031..17893222 286..95 960 100 Minus
3L 28110227 3L 17892716..17892812 383..287 485 100 Minus
3L 28110227 3L 17893297..17893381 97..13 410 98.8 Minus
3L 28110227 3L 17892235..17892283 727..679 245 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:23:53 has no hits.

BS12113.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:30:36 Download gff for BS12113.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp74F-RB 1..711 17..727 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:02:44 Download gff for BS12113.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp74F-RB 379..1099 10..731 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:41:54 Download gff for BS12113.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp74F-RA 289..999 17..727 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:30:36 Download gff for BS12113.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp74F-RB 379..1099 10..731 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:10:32 Download gff for BS12113.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp74F-RA 289..999 17..727 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:10:32 Download gff for BS12113.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17892235..17892282 680..727 100 <- Minus
3L 17892357..17892653 383..679 100 <- Minus
3L 17892717..17892812 287..382 100 <- Minus
3L 17893031..17893222 95..286 100 <- Minus
3L 17893300..17893377 17..94 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:41:54 Download gff for BS12113.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17885335..17885382 680..727 100 <- Minus
arm_3L 17885457..17885753 383..679 100 <- Minus
arm_3L 17885817..17885912 287..382 100 <- Minus
arm_3L 17886131..17886322 95..286 100 <- Minus
arm_3L 17886400..17886477 17..94 100   Minus

BS12113.pep Sequence

Translation from 16 to 726

> BS12113.pep
MGFSSRMDCCGQFVKYSLFIANFVIFVGGAIVFCLTLWTLVDRSFVNELL
GTNLFSGAVYVLLVTSIIICLVSFLGCVGAGKEVKCLLLTYFIIVALVFV
TMLIGGVLGYVFRERVQQTMRQEMRSTMALYGSRREITQAWDLTQERLQC
CGVDTWHDWNRYGPVPESCCQELFGGQRKECTIFPTITNLYNQGCLYVTT
NFIRDHAAVIGGTSIAVAILMIFGMIFSCLLFNMIE*

BS12113.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:26:10
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp74F-PB 236 CG5492-PB 1..236 1..236 1246 100 Plus
Tsp74F-PA 236 CG5492-PA 1..236 1..236 1246 100 Plus
Tsp29Fa-PC 248 CG9494-PC 11..239 14..236 289 29.6 Plus
Tsp29Fa-PB 248 CG9494-PB 11..239 14..236 289 29.6 Plus
Tsp29Fa-PA 248 CG9494-PA 11..239 14..236 289 29.6 Plus