Clone Sequence Records
BS12113.3prime Sequence
741 bp (741 high quality bases) assembled on 2006-06-16
> BS12113.3prime
ATGGTCTAGAAAGCTTCTATTCGATCATATTGAATAGTAGACAGGAGAAT
ATCATGCCAAAGATCATCAGTATGGCCACCGCTATGGATGTACCTCCAAT
AACCGCCGCGTGATCCCTGATGAAGTTGGTCGTCACATAGAGGCATCCCT
GGTTGTACAGATTCGTAATGGTCGGGAAGATTGTGCACTCCTTACGCTGT
CCACCGAAAAGCTCCTGGCAACAGGACTCAGGCACTGGTCCGTACCTATT
CCAGTCGTGCCACGTATCCACTCCGCAGCACTGTAGTCGCTCCTGGGTCA
AATCCCAGGCCTGGGTGATCTCCCTCCTGCTTCCGTATAGTGCCATCGTG
GAACGCATTTCCTGCCGCATGGTCTGCTGAACTCGTTCGCGGAACACGTA
ACCCAAGACACCGCCAATTAGCATGGTCACGAAAACTAGGGCCACTATTA
TGAAATATGTTAGGAGGAGGCATTTGACTTCTTTTCCGGCACCAACACAA
CCCAAAAAGGACACCAGACAAATGATAATCGATGTAACCAGCAGGACGTA
GACAGCACCCGAGAAAAGATTTGTACCGAGCAACTCATTGACGAAACTCC
GATCCACCAGAGTCCACAGGGTGAGACAAAACACAATCGCTCCACCCACG
AATATCACAAAGTTGGCTATGAAAAGACTGTACTTGACGAACTGCCCGCA
GCAGTCCATTCGCGAACTGAAGCCCATGTCGACTGATAACT
BS12113.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:27:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5492-PA | 711 | Tsp74F-RA | 1..711 | 727..17 | 3555 | 100 | Minus |
CG5492-PB | 711 | Tsp74F-RB | 1..711 | 727..17 | 3555 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:54:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp74F-RB | 1519 | CG5492-RB | 390..1104 | 731..17 | 3560 | 99.9 | Minus |
Tsp74F-RA | 1414 | CG5492-RA | 285..999 | 731..17 | 3560 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:54:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17892357..17892655 | 65..363 | 1495 | 100 | Plus |
3L | 28110227 | 3L | 17893031..17893222 | 458..649 | 960 | 100 | Plus |
3L | 28110227 | 3L | 17892716..17892812 | 361..457 | 485 | 100 | Plus |
3L | 28110227 | 3L | 17893297..17893381 | 647..731 | 410 | 98.8 | Plus |
3L | 28110227 | 3L | 17892235..17892283 | 17..65 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:54:52 has no hits.
BS12113.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:59 Download gff for
BS12113.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5492-PB | 1..711 | 17..727 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:22:39 Download gff for
BS12113.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp74F-RA | 282..1002 | 13..734 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:30:31 Download gff for
BS12113.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp74F-RA | 282..1002 | 13..734 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:30:31 Download gff for
BS12113.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17892232..17892282 | 13..64 | 96 | <- | Plus |
3L | 17892357..17892653 | 65..361 | 100 | <- | Plus |
3L | 17892717..17892812 | 362..457 | 100 | <- | Plus |
3L | 17893031..17893222 | 458..649 | 100 | <- | Plus |
3L | 17893300..17893384 | 650..734 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:22:39 Download gff for
BS12113.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17885332..17885382 | 13..64 | 96 | <- | Plus |
arm_3L | 17885457..17885753 | 65..361 | 100 | <- | Plus |
arm_3L | 17885817..17885912 | 362..457 | 100 | <- | Plus |
arm_3L | 17886131..17886322 | 458..649 | 100 | <- | Plus |
arm_3L | 17886400..17886484 | 650..734 | 97 | | Plus |
BS12113.5prime Sequence
741 bp (741 high quality bases) assembled on 2006-06-16
> BS12113.5prime
GAAGTTATCAGTCGACATGGGCTTCAGTTCGCGAATGGACTGCTGCGGGC
AGTTCGTCAAGTACAGTCTTTTCATAGCCAACTTTGTGATATTCGTGGGT
GGAGCGATTGTGTTTTGTCTCACCCTGTGGACTCTGGTGGATCGGAGTTT
CGTCAATGAGTTGCTCGGTACAAATCTTTTCTCGGGTGCTGTCTACGTCC
TGCTGGTTACATCGATTATCATTTGTCTGGTGTCCTTTTTGGGTTGTGTT
GGTGCCGGAAAAGAAGTCAAATGCCTCCTCCTAACATATTTCATAATAGT
GGCCCTAGTTTTCGTGACCATGCTAATTGGCGGTGTCTTGGGTTACGTGT
TCCGCGAACGAGTTCAGCAGACCATGCGGCAGGAAATGCGTTCCACGATG
GCACTATACGGAAGCAGGAGGGAGATCACCCAGGCCTGGGATTTGACCCA
GGAGCGACTACAGTGCTGCGGAGTGGATACGTGGCACGACTGGAATAGGT
ACGGACCAGTGCCTGAGTCCTGTTGCCAGGAGCTTTTCGGTGGACAGCGT
AAGGAGTGCACAATCTTCCCGACCATTACGAATCTGTACAACCAGGGATG
CCTCTATGTGACGACCAACTTCATCAGGGATCACGCGGCGGTTATTGGAG
GTACATCCATAGCGGTGGCCATACTGATGATCTTTGGCATGATATTCTCC
TGTCTACTATTCAATATGATCGAATAGAAGCTTTCTAGACC
BS12113.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:27:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5492-PA | 711 | Tsp74F-RA | 1..711 | 17..727 | 3555 | 100 | Plus |
CG5492-PB | 711 | Tsp74F-RB | 1..711 | 17..727 | 3555 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:56:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp74F-RB | 1519 | CG5492-RB | 390..1104 | 13..727 | 3560 | 99.9 | Plus |
Tsp74F-RA | 1414 | CG5492-RA | 285..999 | 13..727 | 3560 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:56:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17892357..17892655 | 679..381 | 1495 | 100 | Minus |
3L | 28110227 | 3L | 17893031..17893222 | 286..95 | 960 | 100 | Minus |
3L | 28110227 | 3L | 17892716..17892812 | 383..287 | 485 | 100 | Minus |
3L | 28110227 | 3L | 17893297..17893381 | 97..13 | 410 | 98.8 | Minus |
3L | 28110227 | 3L | 17892235..17892283 | 727..679 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 17:56:12 has no hits.
BS12113.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:30:59 Download gff for
BS12113.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5492-PB | 1..711 | 17..727 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:40:33 Download gff for
BS12113.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp74F-RA | 282..1002 | 10..731 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:12:23 Download gff for
BS12113.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp74F-RA | 282..1002 | 10..731 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:12:23 Download gff for
BS12113.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17892232..17892282 | 680..731 | 96 | <- | Minus |
3L | 17892357..17892653 | 383..679 | 100 | <- | Minus |
3L | 17892717..17892812 | 287..382 | 100 | <- | Minus |
3L | 17893031..17893222 | 95..286 | 100 | <- | Minus |
3L | 17893300..17893384 | 10..94 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:40:33 Download gff for
BS12113.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17885332..17885382 | 680..731 | 96 | <- | Minus |
arm_3L | 17885457..17885753 | 383..679 | 100 | <- | Minus |
arm_3L | 17885817..17885912 | 287..382 | 100 | <- | Minus |
arm_3L | 17886131..17886322 | 95..286 | 100 | <- | Minus |
arm_3L | 17886400..17886484 | 10..94 | 97 | | Minus |
BS12113.complete Sequence
743 bp assembled on 2006-11-01
GenBank Submission: FJ637072
> BS12113.complete
GAAGTTATCAGTCGACATGGGCTTCAGTTCGCGAATGGACTGCTGCGGGC
AGTTCGTCAAGTACAGTCTTTTCATAGCCAACTTTGTGATATTCGTGGGT
GGAGCGATTGTGTTTTGTCTCACCCTGTGGACTCTGGTGGATCGGAGTTT
CGTCAATGAGTTGCTCGGTACAAATCTTTTCTCGGGTGCTGTCTACGTCC
TGCTGGTTACATCGATTATCATTTGTCTGGTGTCCTTTTTGGGTTGTGTT
GGTGCCGGAAAAGAAGTCAAATGCCTCCTCCTAACATATTTCATAATAGT
GGCCCTAGTTTTCGTGACCATGCTAATTGGCGGTGTCTTGGGTTACGTGT
TCCGCGAACGAGTTCAGCAGACCATGCGGCAGGAAATGCGTTCCACGATG
GCACTATACGGAAGCAGGAGGGAGATCACCCAGGCCTGGGATTTGACCCA
GGAGCGACTACAGTGCTGCGGAGTGGATACGTGGCACGACTGGAATAGGT
ACGGACCAGTGCCTGAGTCCTGTTGCCAGGAGCTTTTCGGTGGACAGCGT
AAGGAGTGCACAATCTTCCCGACCATTACGAATCTGTACAACCAGGGATG
CCTCTATGTGACGACCAACTTCATCAGGGATCACGCGGCGGTTATTGGAG
GTACATCCATAGCGGTGGCCATACTGATGATCTTTGGCATGATATTCTCC
TGTCTACTATTCAATATGATCGAATAGAAGCTTTCTAGACCAT
BS12113.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:23:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp74F-RB | 711 | CG5492-PB | 1..711 | 17..727 | 3555 | 100 | Plus |
Tsp74F-RA | 711 | CG5492-PA | 1..711 | 17..727 | 3555 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:23:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp74F-RB | 1519 | CG5492-RB | 390..1104 | 13..727 | 3560 | 99.9 | Plus |
Tsp74F-RA | 1414 | CG5492-RA | 285..999 | 13..727 | 3560 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:23:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17892357..17892655 | 679..381 | 1495 | 100 | Minus |
3L | 28110227 | 3L | 17893031..17893222 | 286..95 | 960 | 100 | Minus |
3L | 28110227 | 3L | 17892716..17892812 | 383..287 | 485 | 100 | Minus |
3L | 28110227 | 3L | 17893297..17893381 | 97..13 | 410 | 98.8 | Minus |
3L | 28110227 | 3L | 17892235..17892283 | 727..679 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:23:53 has no hits.
BS12113.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:30:36 Download gff for
BS12113.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp74F-RB | 1..711 | 17..727 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:02:44 Download gff for
BS12113.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp74F-RB | 379..1099 | 10..731 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:41:54 Download gff for
BS12113.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp74F-RA | 289..999 | 17..727 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:30:36 Download gff for
BS12113.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp74F-RB | 379..1099 | 10..731 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:10:32 Download gff for
BS12113.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp74F-RA | 289..999 | 17..727 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:10:32 Download gff for
BS12113.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17892235..17892282 | 680..727 | 100 | <- | Minus |
3L | 17892357..17892653 | 383..679 | 100 | <- | Minus |
3L | 17892717..17892812 | 287..382 | 100 | <- | Minus |
3L | 17893031..17893222 | 95..286 | 100 | <- | Minus |
3L | 17893300..17893377 | 17..94 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:41:54 Download gff for
BS12113.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17885335..17885382 | 680..727 | 100 | <- | Minus |
arm_3L | 17885457..17885753 | 383..679 | 100 | <- | Minus |
arm_3L | 17885817..17885912 | 287..382 | 100 | <- | Minus |
arm_3L | 17886131..17886322 | 95..286 | 100 | <- | Minus |
arm_3L | 17886400..17886477 | 17..94 | 100 | | Minus |
BS12113.pep Sequence
Translation from 16 to 726
> BS12113.pep
MGFSSRMDCCGQFVKYSLFIANFVIFVGGAIVFCLTLWTLVDRSFVNELL
GTNLFSGAVYVLLVTSIIICLVSFLGCVGAGKEVKCLLLTYFIIVALVFV
TMLIGGVLGYVFRERVQQTMRQEMRSTMALYGSRREITQAWDLTQERLQC
CGVDTWHDWNRYGPVPESCCQELFGGQRKECTIFPTITNLYNQGCLYVTT
NFIRDHAAVIGGTSIAVAILMIFGMIFSCLLFNMIE*
BS12113.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:26:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp74F-PB | 236 | CG5492-PB | 1..236 | 1..236 | 1246 | 100 | Plus |
Tsp74F-PA | 236 | CG5492-PA | 1..236 | 1..236 | 1246 | 100 | Plus |
Tsp29Fa-PC | 248 | CG9494-PC | 11..239 | 14..236 | 289 | 29.6 | Plus |
Tsp29Fa-PB | 248 | CG9494-PB | 11..239 | 14..236 | 289 | 29.6 | Plus |
Tsp29Fa-PA | 248 | CG9494-PA | 11..239 | 14..236 | 289 | 29.6 | Plus |