Clone BS12114 Report

Search the DGRC for BS12114

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:121
Well:14
Vector:pDNR-Dual
Associated Gene/TranscriptPnn-RA
Protein status:BS12114.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12114.3prime Sequence

867 bp (784 high quality bases) assembled on 2006-06-16

> BS12114.3prime
ATGGTCTAGAAAGCTTTTACTTACACTTATCCAACTGCTCTTCGTCGTCA
GGCTCTTCATAGAAACTTTCGTCTATTGCAGTATCGTCTTCCATCTTCCC
AAAGTTCATGTTCTCCAAGTTTTTAAGCTCAACTTCCAATTCTTCGCGCC
GGAATTCTATAAACACATCAGCTTCACTTTTGCTTTTGCTCAACAATTTT
TCCGTTCTAGGCGAATGCACTTTTGGCCTAAAGAACAGATGTGGTTTCGT
TTTTGTTCGGATGTTATTTTTCGCATTCAACATAGTTGCTTCCCAGACCT
TGAAGTCCTTCATTCTGGCCATTTTGTACTCTAATCTACGGATCTCGAAT
TGCTTTTTTTTCCTATCTAAGAATAGTGTTTCACGCTGTTTCCTCAGCAT
CGCTCTTTCCTGCAGTTCCTGCTTTTCCACCTTCCTATCGATCTCAGCCT
TTTTATCCTCCTTGCTCTTCAGTCGCGATTCCTCCTGACAGAACTTCTGT
AGGGTTCCCAACAGCGATCCGAACATCCTGCGATTCCTGGCCCTCGACTC
AGAGTCTGTGCCCTGTGCCTCGACAATCTCCTTTTTAGTTGGCATCTCCC
GGATGACCCGCGAGTTAATCCGTGGCGGACGACCCTCGTTTTCTTCGATT
GGGAAACGGGAAATTGGATTCTTGCTTTCGTACATTCGCCGCTTGTCTTT
GAAGACCCCACCGGGTGTTGCATTTCGGGGGAACGGTCGGTCCCCATTGT
GCTCGTTCTTCTTGCCATCTTGAGTGTATTTGAATTTTTCCGATCTCTGC
AGGGATTCCTTGGGGACGCGACCAGCAATGCGGCGAATGTTTTCATTTAG
GATCACCAGCGACTGCT

BS12114.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:27:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG8383-PA 912 Pnn-RA 62..912 867..17 4230 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:07:17
Subject Length Description Subject Range Query Range Score Percent Strand
Pnn-RA 1202 CG8383-RA 172..1023 867..16 4245 99.9 Minus
Pnn-RB 1659 CG8383-RB 172..1014 867..25 4200 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:07:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9741197..9741977 796..16 3890 99.9 Minus
3R 32079331 3R 9741070..9741142 867..795 365 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:07:15 has no hits.

BS12114.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:00 Download gff for BS12114.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8383-PA 62..912 17..867 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:44:30 Download gff for BS12114.3prime
Subject Subject Range Query Range Percent Splice Strand
Pnn-RA 172..1029 6..867 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:23:40 Download gff for BS12114.3prime
Subject Subject Range Query Range Percent Splice Strand
Pnn-RA 172..1029 6..867 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:23:40 Download gff for BS12114.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9741070..9741142 795..867 100 -> Minus
3R 9741199..9741983 6..794 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:44:30 Download gff for BS12114.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5566792..5566864 795..867 100 -> Minus
arm_3R 5566921..5567705 6..794 99   Minus

BS12114.5prime Sequence

798 bp (742 high quality bases) assembled on 2006-06-16

> BS12114.5prime
GAAGTTATCAGTCGACATGGTGAATGACTCTGGTCTATCGACAGTGGACG
ACTTGGAGCAAAAACTGAATTCGGCCAAGCAGTCGCTGGTGATCCTAAAT
GAAAACATTCGCCGCATTGCTGGTCGCGTCCCCAAGGAATCCCTGCAGAG
ATCGGAAAAATTCAAATACACCCAAGATGGCAAGAAGAACGAGCACAATG
GGGACCGACCGTTCCCCCGAAATGCAACACCCGGTGGGGTCTTCAAAGAC
AAGCGGCGAATGTACGAAAGCAAGAATCCAATTTCCCGTTTCCCAATCGA
AGAAAACGAGGGTCGTCCGCCACGGATTAACTCGCGGGTCATCCGGGAGA
TGCCAACTAAAAAGGAGATTGTCGAGGCACAGGGCACAGACTCTGAGTCG
AGGGCCAGGAATCGCAGGATGTTCGGATCGCTGTTGGGAACCCTACAGAA
GTTCTGTCAGGAGGAATCGCGACTGAAGAGCAAGGAGGATAAAAAGGCTG
AGATCGATAGGAAGGTGGAAAAGCAGGAACTGCAGGAAAGAGCGATGCTG
AGGAAACAGCGTGAAACACTATTCTTAGATAGGAAAAAAAAGCAATTCGA
GATCCGTAGATTAGAGTACAAAATGGCCAGAATGAAGGACTTCAAGGTCT
GGGAAGCAACTATGTTGAATGCGAAAAATAACATCCGAACAAAAACGAAA
CCACATCTGTTCTTTAGGCCAAAAGTGCATTCGCCTAGAACGGAAAAATT
GTTGAGCAAAAGCAAAAGTGAAGCTGATGTGTTTATAGAATTCCGGCG

BS12114.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:27:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG8383-PA 912 Pnn-RA 1..782 17..798 3910 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:09:32
Subject Length Description Subject Range Query Range Score Percent Strand
Pnn-RB 1659 CG8383-RB 111..892 17..798 3910 100 Plus
Pnn-RA 1202 CG8383-RA 111..892 17..798 3910 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:09:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9741197..9741846 149..798 3250 100 Plus
3R 32079331 3R 9741009..9741142 17..150 670 100 Plus
Blast to na_te.dros performed on 2015-01-31 10:09:29 has no hits.

BS12114.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:00 Download gff for BS12114.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8383-PA 1..782 17..798 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:34:04 Download gff for BS12114.5prime
Subject Subject Range Query Range Percent Splice Strand
Pnn-RA 111..892 17..798 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:43:39 Download gff for BS12114.5prime
Subject Subject Range Query Range Percent Splice Strand
Pnn-RA 111..892 17..798 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:43:39 Download gff for BS12114.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9741009..9741142 17..150 100 -> Plus
3R 9741199..9741846 151..798 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:34:04 Download gff for BS12114.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5566731..5566864 17..150 100 -> Plus
arm_3R 5566921..5567568 151..798 100   Plus

BS12114.complete Sequence

944 bp assembled on 2006-11-01

GenBank Submission: FJ637073

> BS12114.complete
GAAGTTATCAGTCGACATGGTGAATGACTCTGGTCTATCGACAGTGGACG
ACTTGGAGCAAAAACTGAATTCGGCCAAGCAGTCGCTGGTGATCCTAAAT
GAAAACATTCGCCGCATTGCTGGTCGCGTCCCCAAGGAATCCCTGCAGAG
ATCGGAAAAATTCAAATACACCCAAGATGGCAAGAAGAACGAGCACAATG
GGGACCGACCGTTCCCCCGAAATGCAACACCCGGTGGGGTCTTCAAAGAC
AAGCGGCGAATGTACGAAAGCAAGAATCCAATTTCCCGTTTCCCAATCGA
AGAAAACGAGGGTCGTCCGCCACGGATTAACTCGCGGGTCATCCGGGAGA
TGCCAACTAAAAAGGAGATTGTCGAGGCACAGGGCACAGACTCTGAGTCG
AGGGCCAGGAATCGCAGGATGTTCGGATCGCTGTTGGGAACCCTACAGAA
GTTCTGTCAGGAGGAATCGCGACTGAAGAGCAAGGAGGATAAAAAGGCTG
AGATCGATAGGAAGGTGGAAAAGCAGGAACTGCAGGAAAGAGCGATGCTG
AGGAAACAGCGTGAAACACTATTCTTAGATAGGAAAAAAAAGCAATTCGA
GATCCGTAGATTAGAGTACAAAATGGCCAGAATGAAGGACTTCAAGGTCT
GGGAAGCAACTATGTTGAATGCGAAAAATAACATCCGAACAAAAACGAAA
CCACATCTGTTCTTTAGGCCAAAAGTGCATTCGCCTAGAACGGAAAAATT
GTTGAGCAAAAGCAAAAGTGAAGCTGATGTGTTTATAGAATTCCGGCGCG
AAGAATTGGAAGTTGAGCTTAAAAACTTGGAGAACATGAACTTTGGGAAG
ATGGAAGACGATACTGCAATAGACGAAAGTTTCTATGAAGAGCCTGACGA
CGAAGAGCAGTTGGATAAGTGTAAGTAAAAGCTTTCTAGACCAT

BS12114.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:36:56
Subject Length Description Subject Range Query Range Score Percent Strand
Pnn-RA 912 CG8383-PA 1..912 17..928 4560 100 Plus
Pnn-RB 924 CG8383-PB 1..904 17..920 4520 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:36:57
Subject Length Description Subject Range Query Range Score Percent Strand
Pnn-RA 1202 CG8383-RA 111..1023 17..929 4565 100 Plus
Pnn-RB 1659 CG8383-RB 111..1014 17..920 4520 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:36:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9741197..9741977 149..929 3905 100 Plus
3R 32079331 3R 9741009..9741142 17..150 670 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:36:55 has no hits.

BS12114.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:46:26 Download gff for BS12114.complete
Subject Subject Range Query Range Percent Splice Strand
Pnn-RA 1..912 17..928 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:21:27 Download gff for BS12114.complete
Subject Subject Range Query Range Percent Splice Strand
Pnn-RA 88..1006 17..939 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:33:30 Download gff for BS12114.complete
Subject Subject Range Query Range Percent Splice Strand
Pnn-RA 111..1020 17..926 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:46:26 Download gff for BS12114.complete
Subject Subject Range Query Range Percent Splice Strand
Pnn-RA 88..1006 17..939 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:04:37 Download gff for BS12114.complete
Subject Subject Range Query Range Percent Splice Strand
Pnn-RA 111..1020 17..926 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:04:37 Download gff for BS12114.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9741009..9741142 17..150 100 -> Plus
3R 9741199..9741974 151..926 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:33:30 Download gff for BS12114.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5566731..5566864 17..150 100 -> Plus
arm_3R 5566921..5567696 151..926 100   Plus

BS12114.pep Sequence

Translation from 16 to 927

> BS12114.pep
MVNDSGLSTVDDLEQKLNSAKQSLVILNENIRRIAGRVPKESLQRSEKFK
YTQDGKKNEHNGDRPFPRNATPGGVFKDKRRMYESKNPISRFPIEENEGR
PPRINSRVIREMPTKKEIVEAQGTDSESRARNRRMFGSLLGTLQKFCQEE
SRLKSKEDKKAEIDRKVEKQELQERAMLRKQRETLFLDRKKKQFEIRRLE
YKMARMKDFKVWEATMLNAKNNIRTKTKPHLFFRPKVHSPRTEKLLSKSK
SEADVFIEFRREELEVELKNLENMNFGKMEDDTAIDESFYEEPDDEEQLD
KCK*

BS12114.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:14
Subject Length Description Subject Range Query Range Score Percent Strand
Pnn-PA 303 CG8383-PA 1..303 1..303 1554 100 Plus
Pnn-PB 307 CG8383-PB 1..301 1..301 1540 100 Plus