Clone Sequence Records
BS12114.3prime Sequence
867 bp (784 high quality bases) assembled on 2006-06-16
> BS12114.3prime
ATGGTCTAGAAAGCTTTTACTTACACTTATCCAACTGCTCTTCGTCGTCA
GGCTCTTCATAGAAACTTTCGTCTATTGCAGTATCGTCTTCCATCTTCCC
AAAGTTCATGTTCTCCAAGTTTTTAAGCTCAACTTCCAATTCTTCGCGCC
GGAATTCTATAAACACATCAGCTTCACTTTTGCTTTTGCTCAACAATTTT
TCCGTTCTAGGCGAATGCACTTTTGGCCTAAAGAACAGATGTGGTTTCGT
TTTTGTTCGGATGTTATTTTTCGCATTCAACATAGTTGCTTCCCAGACCT
TGAAGTCCTTCATTCTGGCCATTTTGTACTCTAATCTACGGATCTCGAAT
TGCTTTTTTTTCCTATCTAAGAATAGTGTTTCACGCTGTTTCCTCAGCAT
CGCTCTTTCCTGCAGTTCCTGCTTTTCCACCTTCCTATCGATCTCAGCCT
TTTTATCCTCCTTGCTCTTCAGTCGCGATTCCTCCTGACAGAACTTCTGT
AGGGTTCCCAACAGCGATCCGAACATCCTGCGATTCCTGGCCCTCGACTC
AGAGTCTGTGCCCTGTGCCTCGACAATCTCCTTTTTAGTTGGCATCTCCC
GGATGACCCGCGAGTTAATCCGTGGCGGACGACCCTCGTTTTCTTCGATT
GGGAAACGGGAAATTGGATTCTTGCTTTCGTACATTCGCCGCTTGTCTTT
GAAGACCCCACCGGGTGTTGCATTTCGGGGGAACGGTCGGTCCCCATTGT
GCTCGTTCTTCTTGCCATCTTGAGTGTATTTGAATTTTTCCGATCTCTGC
AGGGATTCCTTGGGGACGCGACCAGCAATGCGGCGAATGTTTTCATTTAG
GATCACCAGCGACTGCT
BS12114.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:27:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8383-PA | 912 | Pnn-RA | 62..912 | 867..17 | 4230 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:07:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pnn-RA | 1202 | CG8383-RA | 172..1023 | 867..16 | 4245 | 99.9 | Minus |
Pnn-RB | 1659 | CG8383-RB | 172..1014 | 867..25 | 4200 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:07:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9741197..9741977 | 796..16 | 3890 | 99.9 | Minus |
3R | 32079331 | 3R | 9741070..9741142 | 867..795 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:07:15 has no hits.
BS12114.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:00 Download gff for
BS12114.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8383-PA | 62..912 | 17..867 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:44:30 Download gff for
BS12114.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pnn-RA | 172..1029 | 6..867 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:23:40 Download gff for
BS12114.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pnn-RA | 172..1029 | 6..867 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:23:40 Download gff for
BS12114.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9741070..9741142 | 795..867 | 100 | -> | Minus |
3R | 9741199..9741983 | 6..794 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:44:30 Download gff for
BS12114.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5566792..5566864 | 795..867 | 100 | -> | Minus |
arm_3R | 5566921..5567705 | 6..794 | 99 | | Minus |
BS12114.5prime Sequence
798 bp (742 high quality bases) assembled on 2006-06-16
> BS12114.5prime
GAAGTTATCAGTCGACATGGTGAATGACTCTGGTCTATCGACAGTGGACG
ACTTGGAGCAAAAACTGAATTCGGCCAAGCAGTCGCTGGTGATCCTAAAT
GAAAACATTCGCCGCATTGCTGGTCGCGTCCCCAAGGAATCCCTGCAGAG
ATCGGAAAAATTCAAATACACCCAAGATGGCAAGAAGAACGAGCACAATG
GGGACCGACCGTTCCCCCGAAATGCAACACCCGGTGGGGTCTTCAAAGAC
AAGCGGCGAATGTACGAAAGCAAGAATCCAATTTCCCGTTTCCCAATCGA
AGAAAACGAGGGTCGTCCGCCACGGATTAACTCGCGGGTCATCCGGGAGA
TGCCAACTAAAAAGGAGATTGTCGAGGCACAGGGCACAGACTCTGAGTCG
AGGGCCAGGAATCGCAGGATGTTCGGATCGCTGTTGGGAACCCTACAGAA
GTTCTGTCAGGAGGAATCGCGACTGAAGAGCAAGGAGGATAAAAAGGCTG
AGATCGATAGGAAGGTGGAAAAGCAGGAACTGCAGGAAAGAGCGATGCTG
AGGAAACAGCGTGAAACACTATTCTTAGATAGGAAAAAAAAGCAATTCGA
GATCCGTAGATTAGAGTACAAAATGGCCAGAATGAAGGACTTCAAGGTCT
GGGAAGCAACTATGTTGAATGCGAAAAATAACATCCGAACAAAAACGAAA
CCACATCTGTTCTTTAGGCCAAAAGTGCATTCGCCTAGAACGGAAAAATT
GTTGAGCAAAAGCAAAAGTGAAGCTGATGTGTTTATAGAATTCCGGCG
BS12114.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:27:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8383-PA | 912 | Pnn-RA | 1..782 | 17..798 | 3910 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:09:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pnn-RB | 1659 | CG8383-RB | 111..892 | 17..798 | 3910 | 100 | Plus |
Pnn-RA | 1202 | CG8383-RA | 111..892 | 17..798 | 3910 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:09:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9741197..9741846 | 149..798 | 3250 | 100 | Plus |
3R | 32079331 | 3R | 9741009..9741142 | 17..150 | 670 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 10:09:29 has no hits.
BS12114.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:00 Download gff for
BS12114.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8383-PA | 1..782 | 17..798 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:34:04 Download gff for
BS12114.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pnn-RA | 111..892 | 17..798 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:43:39 Download gff for
BS12114.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pnn-RA | 111..892 | 17..798 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:43:39 Download gff for
BS12114.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9741009..9741142 | 17..150 | 100 | -> | Plus |
3R | 9741199..9741846 | 151..798 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:34:04 Download gff for
BS12114.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5566731..5566864 | 17..150 | 100 | -> | Plus |
arm_3R | 5566921..5567568 | 151..798 | 100 | | Plus |
BS12114.complete Sequence
944 bp assembled on 2006-11-01
GenBank Submission: FJ637073
> BS12114.complete
GAAGTTATCAGTCGACATGGTGAATGACTCTGGTCTATCGACAGTGGACG
ACTTGGAGCAAAAACTGAATTCGGCCAAGCAGTCGCTGGTGATCCTAAAT
GAAAACATTCGCCGCATTGCTGGTCGCGTCCCCAAGGAATCCCTGCAGAG
ATCGGAAAAATTCAAATACACCCAAGATGGCAAGAAGAACGAGCACAATG
GGGACCGACCGTTCCCCCGAAATGCAACACCCGGTGGGGTCTTCAAAGAC
AAGCGGCGAATGTACGAAAGCAAGAATCCAATTTCCCGTTTCCCAATCGA
AGAAAACGAGGGTCGTCCGCCACGGATTAACTCGCGGGTCATCCGGGAGA
TGCCAACTAAAAAGGAGATTGTCGAGGCACAGGGCACAGACTCTGAGTCG
AGGGCCAGGAATCGCAGGATGTTCGGATCGCTGTTGGGAACCCTACAGAA
GTTCTGTCAGGAGGAATCGCGACTGAAGAGCAAGGAGGATAAAAAGGCTG
AGATCGATAGGAAGGTGGAAAAGCAGGAACTGCAGGAAAGAGCGATGCTG
AGGAAACAGCGTGAAACACTATTCTTAGATAGGAAAAAAAAGCAATTCGA
GATCCGTAGATTAGAGTACAAAATGGCCAGAATGAAGGACTTCAAGGTCT
GGGAAGCAACTATGTTGAATGCGAAAAATAACATCCGAACAAAAACGAAA
CCACATCTGTTCTTTAGGCCAAAAGTGCATTCGCCTAGAACGGAAAAATT
GTTGAGCAAAAGCAAAAGTGAAGCTGATGTGTTTATAGAATTCCGGCGCG
AAGAATTGGAAGTTGAGCTTAAAAACTTGGAGAACATGAACTTTGGGAAG
ATGGAAGACGATACTGCAATAGACGAAAGTTTCTATGAAGAGCCTGACGA
CGAAGAGCAGTTGGATAAGTGTAAGTAAAAGCTTTCTAGACCAT
BS12114.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:36:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pnn-RA | 912 | CG8383-PA | 1..912 | 17..928 | 4560 | 100 | Plus |
Pnn-RB | 924 | CG8383-PB | 1..904 | 17..920 | 4520 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:36:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pnn-RA | 1202 | CG8383-RA | 111..1023 | 17..929 | 4565 | 100 | Plus |
Pnn-RB | 1659 | CG8383-RB | 111..1014 | 17..920 | 4520 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:36:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9741197..9741977 | 149..929 | 3905 | 100 | Plus |
3R | 32079331 | 3R | 9741009..9741142 | 17..150 | 670 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:36:55 has no hits.
BS12114.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:46:26 Download gff for
BS12114.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pnn-RA | 1..912 | 17..928 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:21:27 Download gff for
BS12114.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pnn-RA | 88..1006 | 17..939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:33:30 Download gff for
BS12114.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pnn-RA | 111..1020 | 17..926 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:46:26 Download gff for
BS12114.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pnn-RA | 88..1006 | 17..939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:04:37 Download gff for
BS12114.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pnn-RA | 111..1020 | 17..926 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:04:37 Download gff for
BS12114.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9741009..9741142 | 17..150 | 100 | -> | Plus |
3R | 9741199..9741974 | 151..926 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:33:30 Download gff for
BS12114.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5566731..5566864 | 17..150 | 100 | -> | Plus |
arm_3R | 5566921..5567696 | 151..926 | 100 | | Plus |
BS12114.pep Sequence
Translation from 16 to 927
> BS12114.pep
MVNDSGLSTVDDLEQKLNSAKQSLVILNENIRRIAGRVPKESLQRSEKFK
YTQDGKKNEHNGDRPFPRNATPGGVFKDKRRMYESKNPISRFPIEENEGR
PPRINSRVIREMPTKKEIVEAQGTDSESRARNRRMFGSLLGTLQKFCQEE
SRLKSKEDKKAEIDRKVEKQELQERAMLRKQRETLFLDRKKKQFEIRRLE
YKMARMKDFKVWEATMLNAKNNIRTKTKPHLFFRPKVHSPRTEKLLSKSK
SEADVFIEFRREELEVELKNLENMNFGKMEDDTAIDESFYEEPDDEEQLD
KCK*
BS12114.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pnn-PA | 303 | CG8383-PA | 1..303 | 1..303 | 1554 | 100 | Plus |
Pnn-PB | 307 | CG8383-PB | 1..301 | 1..301 | 1540 | 100 | Plus |