Clone BS12115 Report

Search the DGRC for BS12115

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:121
Well:15
Vector:pDNR-Dual
Associated Gene/TranscriptCG15044-RA
Protein status:BS12115.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12115.3prime Sequence

513 bp (513 high quality bases) assembled on 2006-06-16

> BS12115.3prime
ATGGTCTAGAAAGCTTCTAGTACCCATAGATGAACGTCTCGTAGACGAAG
CTGCGCGTCTGATTGGAGGTCAGCAGAATCTCCACGTTGGTCTGACCGAT
GCCACCCTTGGTCAGATAGCCACCGGCATCGTCCGCCGTCATGTCCACAT
ACACCTCGATGCTCGTCAGCGTGACCCCTGTGCTGGCTCCGGCCGGATAG
CTCATGAGCACCTCCACATCCTTGGCACTGGGAAAGCTGTCGTCATCGTA
GTGGTTCACAATGAGTCGGTCACCCGATGCCCGCTTTCCCGCGGTGAAGA
CCACGTTGCCCTTCGAGTGCTTCACCTTGTTCATCTCGTTCAGCTGTGCG
TCCGGATTGAGGGTGGTGTAGCGTGTTTCGTCGGTCACGGGCGTTATGTC
CGTATAGTAGAGATCGCTGGCACGGGCGTGTGGCTGTCCGGATACCGATG
CCATGATGCCCAGCACCAGGCAGAGCACTAGGAACATCTTTGTTAACATG
TCGACTGATAACT

BS12115.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:28:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG15044-PA 483 CG15044-RA 1..483 499..17 2415 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:38:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG15044-RA 822 CG15044-RA 116..598 499..17 2415 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:38:03
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18491409..18491891 17..499 2415 100 Plus
Blast to na_te.dros performed on 2015-02-03 06:38:06 has no hits.

BS12115.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:00 Download gff for BS12115.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15044-PA 1..483 17..499 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:29:50 Download gff for BS12115.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15044-RA 113..605 8..505 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:38:11 Download gff for BS12115.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15044-RA 113..605 8..505 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:38:11 Download gff for BS12115.3prime
Subject Subject Range Query Range Percent Splice Strand
X 18491402..18491894 8..505 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:29:50 Download gff for BS12115.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18385435..18385927 8..505 98   Plus

BS12115.5prime Sequence

513 bp (513 high quality bases) assembled on 2006-06-16

> BS12115.5prime
GAAGTTATCAGTCGACATGTTAACAAAGATGTTCCTAGTGCTCTGCCTGG
TGCTGGGCATCATGGCATCGGTATCCGGACAGCCACACGCCCGTGCCAGC
GATCTCTACTATACGGACATAACGCCCGTGACCGACGAAACACGCTACAC
CACCCTCAATCCGGACGCACAGCTGAACGAGATGAACAAGGTGAAGCACT
CGAAGGGCAACGTGGTCTTCACCGCGGGAAAGCGGGCATCGGGTGACCGA
CTCATTGTGAACCACTACGATGACGACAGCTTTCCCAGTGCCAAGGATGT
GGAGGTGCTCATGAGCTATCCGGCCGGAGCCAGCACAGGGGTCACGCTGA
CGAGCATCGAGGTGTATGTGGACATGACGGCGGACGATGCCGGTGGCTAT
CTGACCAAGGGTGGCATCGGTCAGACCAACGTGGAGATTCTGCTGACCTC
CAATCAGACGCGCAGCTTCGTCTACGAGACGTTCATCTATGGGTACTAGA
AGCTTTCTAGACC

BS12115.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:28:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG15044-PA 483 CG15044-RA 1..483 17..499 2415 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:34:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG15044-RA 822 CG15044-RA 116..598 17..499 2415 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:34:21
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18491409..18491891 499..17 2415 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:34:25 has no hits.

BS12115.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:01 Download gff for BS12115.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15044-PA 1..483 17..499 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:41:39 Download gff for BS12115.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15044-RA 113..605 11..508 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:58:18 Download gff for BS12115.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15044-RA 113..605 11..508 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:58:18 Download gff for BS12115.5prime
Subject Subject Range Query Range Percent Splice Strand
X 18491402..18491894 11..508 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:41:39 Download gff for BS12115.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18385435..18385927 11..508 98   Minus

BS12115.complete Sequence

515 bp assembled on 2006-11-01

GenBank Submission: FJ637074

> BS12115.complete
GAAGTTATCAGTCGACATGTTAACAAAGATGTTCCTAGTGCTCTGCCTGG
TGCTGGGCATCATGGCATCGGTATCCGGACAGCCACACGCCCGTGCCAGC
GATCTCTACTATACGGACATAACGCCCGTGACCGACGAAACACGCTACAC
CACCCTCAATCCGGACGCACAGCTGAACGAGATGAACAAGGTGAAGCACT
CGAAGGGCAACGTGGTCTTCACCGCGGGAAAGCGGGCATCGGGTGACCGA
CTCATTGTGAACCACTACGATGACGACAGCTTTCCCAGTGCCAAGGATGT
GGAGGTGCTCATGAGCTATCCGGCCGGAGCCAGCACAGGGGTCACGCTGA
CGAGCATCGAGGTGTATGTGGACATGACGGCGGACGATGCCGGTGGCTAT
CTGACCAAGGGTGGCATCGGTCAGACCAACGTGGAGATTCTGCTGACCTC
CAATCAGACGCGCAGCTTCGTCTACGAGACGTTCATCTATGGGTACTAGA
AGCTTTCTAGACCAT

BS12115.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:36:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG15044-RA 483 CG15044-PA 1..483 17..499 2415 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:36:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG15044-RA 822 CG15044-RA 116..598 17..499 2415 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:36:10
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18491409..18491891 499..17 2415 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:36:11 has no hits.

BS12115.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:31:00 Download gff for BS12115.complete
Subject Subject Range Query Range Percent Splice Strand
CG15044-RA 1..483 17..499 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:14:56 Download gff for BS12115.complete
Subject Subject Range Query Range Percent Splice Strand
CG15044-RA 103..595 11..508 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:23 Download gff for BS12115.complete
Subject Subject Range Query Range Percent Splice Strand
CG15044-RA 121..598 22..499 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:31:01 Download gff for BS12115.complete
Subject Subject Range Query Range Percent Splice Strand
CG15044-RA 103..595 11..508 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:22:19 Download gff for BS12115.complete
Subject Subject Range Query Range Percent Splice Strand
CG15044-RA 121..598 22..499 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:22:19 Download gff for BS12115.complete
Subject Subject Range Query Range Percent Splice Strand
X 18491409..18491886 22..499 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:23 Download gff for BS12115.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 18385442..18385919 22..499 100   Minus

BS12115.pep Sequence

Translation from 16 to 498

> BS12115.pep
MLTKMFLVLCLVLGIMASVSGQPHARASDLYYTDITPVTDETRYTTLNPD
AQLNEMNKVKHSKGNVVFTAGKRASGDRLIVNHYDDDSFPSAKDVEVLMS
YPAGASTGVTLTSIEVYVDMTADDAGGYLTKGGIGQTNVEILLTSNQTRS
FVYETFIYGY*

BS12115.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:51:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG15044-PA 160 CG15044-PA 1..160 1..160 821 100 Plus
CG15043-PB 163 CG15043-PB 7..161 7..159 153 25.8 Plus
CG15043-PA 163 CG15043-PA 7..161 7..159 153 25.8 Plus