BS12117.complete Sequence
1700 bp assembled on 2008-08-14
GenBank Submission: FJ637075
> BS12117.complete
GAAGTTATCAGTCGACATGATCAAGGCGGCTGCTGAGGATCGCATCTCAA
CAAAGAGCGTCGGGTATGCGTGGGTCTCTCCGGAGGCCACAGTGTCCCGA
ACGGAGACGGTTGGCGGCGACGATATCATCGAATTCGAACCCAAGGAGGA
GCTCGATGAGTCGGAGAAAAGCCCACTTCCCCAAATTCATGCTGTACCAT
TTGCCGGCCATGACAACTTAAAAATGGAAGAACCTCTGCCGAGCGAGAGT
CCGTTTCACAAGGACATTGCCTTCTTTGTCTGCCGTGACCGCCAGTCATT
GCAGATTGTGCAGGGCGAGGGATTCCAGCACCTAGTGAAAGTACTGTGCC
CCACCTACAGACCACCGAGTGCGGCGAAACTGGAGGCCATTATCTGCAGG
GAGTCGGAAGCGCAGAGGTCCAAGCTCTGCCAGCAGTTGGCCGACATCTC
GACACTCAGCCTAAGTTGCTCGGTGCACACGAATGCGGAGAGTCGAAGCT
GGATGGAGCTGGTGGCCCACTTTCACGAGGGGCGGCAACGAATCTCCCGA
ACTCTTTCTGTGCTGCGCCTTCCCGATCTTTTCACCTCCAACGATCTGGT
GGATCGCATGGACCAAGTGTGTCAGCGCTTCGACATTCCAAAGTCAAGGA
TCTGCTGCGTGTCGACAAGGAGCAGTCAACTACTGGAGGATGCGGTGACA
TCGTTCATGGGCGCTCATCATCATGTTCCCTGCTTCGCAGACCAATTGAA
TTCTATTTTAGAGGAGGTGGTGCAGCGCCCAGAAATACGTCATTTGCGCG
ACAAGGTGCGTTCCCATGTGCAGTCCACATTGCAGCTGAATCCCCAACTG
GATTCCATACACCGACCGATTAGTGTGTACAATATGCTAGACTTATACCT
GAAACAGACTCTCGTTCAAGAGCCGCTGCCGCTTTCGACATCGGAGGTGG
ATTTGTGTCAGCAATTGCTGGACGTGCTGAGGCCGTTGACCAGCTCCATG
CGTGAGCTAAGTCGAACACCATATCCGGCGGCCAGCACAGCCCTGCCCAT
TGCCCAAACTCTGATCAACGAACTGAAGCAGGAGAAGAGTGCGGAACACA
TGGTTGCCAGGGAAATACGCTTGTTCCTGGTTCAGCAGCTGGAGGAGATC
TTCGAACGAATGGAGCGCAACTTGCACCTGGCATTGGCAAGTCTGCTGGA
CCCACGCTTTCGAAATATTCCCTTCCGGAGTGGGGCCCTGGTGGCCCAGT
ACATGACTCAACTCTATGACATGATGCAGGCGCATGTGGACAGCGGGGAG
CAAGCTGTTGCAAAGCATCCGGAGAACCGTGATCACTACGATATCTGGGC
GGCATTCAAATCCTTTTCGCATGGGAAGCAAAGGATTGTAAACGGCAGCA
ACGGTCCCGAGGCGGACGATGAGATAGCCAGATACTTTTGCGCCGGCATG
AGTACCCTGCGAGCCGATCCCTTTCAGCTCTGGGAGGAACTGGCCGAAGC
TCACCCCTTCCTGCACAACGTAGCACAGAGGTACCTGCACGTTCCGGCCA
CCGCAGAGCCGGCGGATCGGCTATTTACGGCCGAAGGAGCGGCGGTTGCG
GCGCAGTACGCCAGACTAATCGAAAACAACATGGAAAACATACTCTTCAT
GGCGGAAATTCCAACGAAGGAGTGGCAGTTATAGAAGCTTTCTAGACCAT
BS12117.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:35:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16863-RA | 1668 | CG16863-PA | 1..1668 | 17..1684 | 8340 | 100 | Plus |
| CG16863-RB | 1986 | CG16863-PB | 319..1986 | 17..1684 | 8340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:35:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16863-RA | 2237 | CG16863-RA | 441..2108 | 17..1684 | 8340 | 100 | Plus |
| CG16863-RB | 2184 | CG16863-RB | 388..2055 | 17..1684 | 8340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:35:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13791665..13793135 | 214..1684 | 7355 | 100 | Plus |
| 2L | 23513712 | 2L | 13791399..13791595 | 17..213 | 985 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:35:49 has no hits.
BS12117.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:46:08 Download gff for
BS12117.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16863-RA | 429..2104 | 7..1684 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:18:41 Download gff for
BS12117.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16863-RB | 388..2055 | 17..1684 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:58:32 Download gff for
BS12117.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16863-RA | 437..2104 | 17..1684 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:13:37 Download gff for
BS12117.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16863-RB | 388..2055 | 17..1684 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:13:37 Download gff for
BS12117.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13791399..13791595 | 17..213 | 100 | -> | Plus |
| 2L | 13791665..13793135 | 214..1684 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:18:41 Download gff for
BS12117.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13791399..13791595 | 17..213 | 100 | -> | Plus |
| arm_2L | 13791665..13793135 | 214..1684 | 100 | | Plus |
BS12117.pep Sequence
Translation from 16 to 1683
> BS12117.pep
MIKAAAEDRISTKSVGYAWVSPEATVSRTETVGGDDIIEFEPKEELDESE
KSPLPQIHAVPFAGHDNLKMEEPLPSESPFHKDIAFFVCRDRQSLQIVQG
EGFQHLVKVLCPTYRPPSAAKLEAIICRESEAQRSKLCQQLADISTLSLS
CSVHTNAESRSWMELVAHFHEGRQRISRTLSVLRLPDLFTSNDLVDRMDQ
VCQRFDIPKSRICCVSTRSSQLLEDAVTSFMGAHHHVPCFADQLNSILEE
VVQRPEIRHLRDKVRSHVQSTLQLNPQLDSIHRPISVYNMLDLYLKQTLV
QEPLPLSTSEVDLCQQLLDVLRPLTSSMRELSRTPYPAASTALPIAQTLI
NELKQEKSAEHMVAREIRLFLVQQLEEIFERMERNLHLALASLLDPRFRN
IPFRSGALVAQYMTQLYDMMQAHVDSGEQAVAKHPENRDHYDIWAAFKSF
SHGKQRIVNGSNGPEADDEIARYFCAGMSTLRADPFQLWEELAEAHPFLH
NVAQRYLHVPATAEPADRLFTAEGAAVAAQYARLIENNMENILFMAEIPT
KEWQL*
BS12117.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:11:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16863-PA | 555 | CG16863-PA | 1..555 | 1..555 | 2866 | 100 | Plus |
| CG16863-PB | 661 | CG16863-PB | 107..661 | 1..555 | 2866 | 100 | Plus |
