BS12119.complete Sequence
1088 bp assembled on 2006-11-01
GenBank Submission: FJ637076
> BS12119.complete
GAAGTTATCAGTCGACATGTCTGTGTGGACCACGGCCAACAATTCGGGCC
TAGAGACGCCAACAAAGTCGCCGATCACGTCGTCGGTTCCGCGGGCAGCG
AGAAGTTCTGCAGTGATCACCACTGGAAATCACCAGCAGCACCACTTCCA
GCACGTTGTGGCCGCCGCCGTTGCAGCCGCCACTTCAGTGGCCACCGGTC
ATCAGTTCCAGCAACAGTTCCCGCTGCACGCACATCCGCATCCACAGCAC
CACAGCAACAGTCCCACGGGTAGCGGCAGCAACAGCAACAACAGCGCAGG
TTTCCAGCGCACCAGCATCAGCAACTCGCTGCTGCAGTTCCCGCCGCCCC
CGCCCCCTTCCTCACAGAACCAGGCGAAGCCGCGCGGACACCATCGCACC
GCCAGCAGCAGCATGTCGCAGTCCGGCGAGGATCTCCACTCGCCCACCTA
CCTGTCCTGGCGGAAGCTCCAGCTTAGTCGGGCCAAGCTAAAGGCATCCA
GCAAGACGTCCGCCCTGCTCTCCGGATTCGCCATGGTGGCGATGGTGGAG
GTGCAACTGGATCACGATACGAATGTACCACCGGGCATGCTGATAGCCTT
CGCCATCTGCACCACCCTCCTGGTGGCGGTGCACATGCTGGCCCTGATGA
TCAGCACCTGTATCCTGCCAAATATTGAGACGGTGTGTAATTTGCATAGT
ATTTCCCTGGTCCACGAATCGCCACACGAGCGTCTCCATTGGTACATTGA
AACGGCGTGGGCATTCTCCACGCTGCTGGGACTCATACTCTTTCTACTGG
AGATAGCCATCCTGTGCTGGGTGAAATTCTATGACCTAAGTCCGCCGGCG
GCTTGGTCAGCGTGTGTGGTCCTCATACCGGTGATGATCATCTTTATGGC
CTTCGCCATTCACTTCTATCGCTCCCTGGTGTCGCACAAATATGAGGTGA
CAGTCTCGGGCATCCGTGAGCTGGAGATGCTCAAGGAGCAGATGGAGCAG
GATCATTTGGAGCATCACAATAACATACGAAATAATGGCATGAACTATGG
CGCATCCGGGGACATTGTCTAGAAGCTTTCTAGACCAT
BS12119.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:48:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
olf186-F-RF | 1056 | CG11430-PF | 1..1056 | 17..1072 | 5280 | 100 | Plus |
olf186-F-RA | 1056 | CG11430-PA | 1..1056 | 17..1072 | 5280 | 100 | Plus |
olf186-F-RB | 1056 | CG11430-PB | 1..1056 | 17..1072 | 5280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:48:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
olf186-F-RF | 2407 | CG11430-RF | 563..1619 | 16..1072 | 5285 | 100 | Plus |
olf186-F-RA | 2080 | CG11430-RA | 236..1292 | 16..1072 | 5285 | 100 | Plus |
olf186-F-RB | 2632 | CG11430-RB | 788..1844 | 16..1072 | 5285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:48:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17859257..17859794 | 535..1072 | 2690 | 100 | Plus |
2R | 25286936 | 2R | 17851097..17851460 | 16..379 | 1820 | 100 | Plus |
2R | 25286936 | 2R | 17857640..17857800 | 378..538 | 805 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 14:48:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6730..6958 | 127..358 | 253 | 60.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6952 | 95..321 | 247 | 59.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6915 | 212..413 | 222 | 60.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6887 | 174..325 | 205 | 63.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6862 | 200..327 | 203 | 65.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2518 | 200..413 | 192 | 59 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2314..2505 | 129..325 | 189 | 58.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2498 | 221..414 | 185 | 61.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6819 | 232..336 | 183 | 71.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6882 | 272..413 | 177 | 62 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2331..2539 | 200..413 | 166 | 57.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2424 | 209..325 | 164 | 61 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2747..2857 | 211..326 | 162 | 65 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2467 | 250..413 | 154 | 59 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1059..1155 | 201..296 | 140 | 61.9 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1052..1148 | 234..325 | 137 | 67 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2588..2643 | 270..325 | 118 | 67.9 | Plus |
BS12119.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:46:27 Download gff for
BS12119.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
olf186-F-RA | 1..1056 | 17..1072 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:21:28 Download gff for
BS12119.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
olf186-F-RA | 219..1275 | 16..1072 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:43:09 Download gff for
BS12119.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
olf186-F-RB | 789..1844 | 17..1072 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:46:27 Download gff for
BS12119.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
olf186-F-RA | 219..1275 | 16..1072 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:00:38 Download gff for
BS12119.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
olf186-F-RB | 789..1844 | 17..1072 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:00:38 Download gff for
BS12119.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17851098..17851460 | 17..379 | 100 | -> | Plus |
2R | 17857642..17857797 | 380..535 | 100 | -> | Plus |
2R | 17859258..17859794 | 536..1072 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:43:09 Download gff for
BS12119.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13745147..13745302 | 380..535 | 100 | -> | Plus |
arm_2R | 13738603..13738965 | 17..379 | 100 | -> | Plus |
arm_2R | 13746763..13747299 | 536..1072 | 100 | | Plus |
BS12119.pep Sequence
Translation from 16 to 1071
> BS12119.pep
MSVWTTANNSGLETPTKSPITSSVPRAARSSAVITTGNHQQHHFQHVVAA
AVAAATSVATGHQFQQQFPLHAHPHPQHHSNSPTGSGSNSNNSAGFQRTS
ISNSLLQFPPPPPPSSQNQAKPRGHHRTASSSMSQSGEDLHSPTYLSWRK
LQLSRAKLKASSKTSALLSGFAMVAMVEVQLDHDTNVPPGMLIAFAICTT
LLVAVHMLALMISTCILPNIETVCNLHSISLVHESPHERLHWYIETAWAF
STLLGLILFLLEIAILCWVKFYDLSPPAAWSACVVLIPVMIIFMAFAIHF
YRSLVSHKYEVTVSGIRELEMLKEQMEQDHLEHHNNIRNNGMNYGASGDI
V*
BS12119.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
olf186-F-PF | 351 | CG11430-PF | 1..351 | 1..351 | 1838 | 100 | Plus |
olf186-F-PA | 351 | CG11430-PA | 1..351 | 1..351 | 1838 | 100 | Plus |
olf186-F-PB | 351 | CG11430-PB | 1..351 | 1..351 | 1838 | 100 | Plus |
olf186-F-PG | 507 | CG11430-PG | 256..507 | 108..351 | 1208 | 94 | Plus |
olf186-F-PE | 507 | CG11430-PE | 256..507 | 108..351 | 1208 | 94 | Plus |