Clone BS12119 Report

Search the DGRC for BS12119

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:121
Well:19
Vector:pDNR-Dual
Associated Gene/Transcriptolf186-F-RA
Protein status:BS12119.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12119.complete Sequence

1088 bp assembled on 2006-11-01

GenBank Submission: FJ637076

> BS12119.complete
GAAGTTATCAGTCGACATGTCTGTGTGGACCACGGCCAACAATTCGGGCC
TAGAGACGCCAACAAAGTCGCCGATCACGTCGTCGGTTCCGCGGGCAGCG
AGAAGTTCTGCAGTGATCACCACTGGAAATCACCAGCAGCACCACTTCCA
GCACGTTGTGGCCGCCGCCGTTGCAGCCGCCACTTCAGTGGCCACCGGTC
ATCAGTTCCAGCAACAGTTCCCGCTGCACGCACATCCGCATCCACAGCAC
CACAGCAACAGTCCCACGGGTAGCGGCAGCAACAGCAACAACAGCGCAGG
TTTCCAGCGCACCAGCATCAGCAACTCGCTGCTGCAGTTCCCGCCGCCCC
CGCCCCCTTCCTCACAGAACCAGGCGAAGCCGCGCGGACACCATCGCACC
GCCAGCAGCAGCATGTCGCAGTCCGGCGAGGATCTCCACTCGCCCACCTA
CCTGTCCTGGCGGAAGCTCCAGCTTAGTCGGGCCAAGCTAAAGGCATCCA
GCAAGACGTCCGCCCTGCTCTCCGGATTCGCCATGGTGGCGATGGTGGAG
GTGCAACTGGATCACGATACGAATGTACCACCGGGCATGCTGATAGCCTT
CGCCATCTGCACCACCCTCCTGGTGGCGGTGCACATGCTGGCCCTGATGA
TCAGCACCTGTATCCTGCCAAATATTGAGACGGTGTGTAATTTGCATAGT
ATTTCCCTGGTCCACGAATCGCCACACGAGCGTCTCCATTGGTACATTGA
AACGGCGTGGGCATTCTCCACGCTGCTGGGACTCATACTCTTTCTACTGG
AGATAGCCATCCTGTGCTGGGTGAAATTCTATGACCTAAGTCCGCCGGCG
GCTTGGTCAGCGTGTGTGGTCCTCATACCGGTGATGATCATCTTTATGGC
CTTCGCCATTCACTTCTATCGCTCCCTGGTGTCGCACAAATATGAGGTGA
CAGTCTCGGGCATCCGTGAGCTGGAGATGCTCAAGGAGCAGATGGAGCAG
GATCATTTGGAGCATCACAATAACATACGAAATAATGGCATGAACTATGG
CGCATCCGGGGACATTGTCTAGAAGCTTTCTAGACCAT

BS12119.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:48:41
Subject Length Description Subject Range Query Range Score Percent Strand
olf186-F-RF 1056 CG11430-PF 1..1056 17..1072 5280 100 Plus
olf186-F-RA 1056 CG11430-PA 1..1056 17..1072 5280 100 Plus
olf186-F-RB 1056 CG11430-PB 1..1056 17..1072 5280 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:48:43
Subject Length Description Subject Range Query Range Score Percent Strand
olf186-F-RF 2407 CG11430-RF 563..1619 16..1072 5285 100 Plus
olf186-F-RA 2080 CG11430-RA 236..1292 16..1072 5285 100 Plus
olf186-F-RB 2632 CG11430-RB 788..1844 16..1072 5285 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:48:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17859257..17859794 535..1072 2690 100 Plus
2R 25286936 2R 17851097..17851460 16..379 1820 100 Plus
2R 25286936 2R 17857640..17857800 378..538 805 100 Plus
Blast to na_te.dros performed 2014-11-26 14:48:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6730..6958 127..358 253 60.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6724..6952 95..321 247 59.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6713..6915 212..413 222 60.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6734..6887 174..325 205 63.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6737..6862 200..327 203 65.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2518 200..413 192 59 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2314..2505 129..325 189 58.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2498 221..414 185 61.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..6819 232..336 183 71.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6735..6882 272..413 177 62 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2331..2539 200..413 166 57.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2424 209..325 164 61 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2747..2857 211..326 162 65 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2467 250..413 154 59 Plus
roo 9092 roo DM_ROO 9092bp 1059..1155 201..296 140 61.9 Plus
roo 9092 roo DM_ROO 9092bp 1052..1148 234..325 137 67 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2588..2643 270..325 118 67.9 Plus

BS12119.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:46:27 Download gff for BS12119.complete
Subject Subject Range Query Range Percent Splice Strand
olf186-F-RA 1..1056 17..1072 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:21:28 Download gff for BS12119.complete
Subject Subject Range Query Range Percent Splice Strand
olf186-F-RA 219..1275 16..1072 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:43:09 Download gff for BS12119.complete
Subject Subject Range Query Range Percent Splice Strand
olf186-F-RB 789..1844 17..1072 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:46:27 Download gff for BS12119.complete
Subject Subject Range Query Range Percent Splice Strand
olf186-F-RA 219..1275 16..1072 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:00:38 Download gff for BS12119.complete
Subject Subject Range Query Range Percent Splice Strand
olf186-F-RB 789..1844 17..1072 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:00:38 Download gff for BS12119.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17851098..17851460 17..379 100 -> Plus
2R 17857642..17857797 380..535 100 -> Plus
2R 17859258..17859794 536..1072 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:43:09 Download gff for BS12119.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13745147..13745302 380..535 100 -> Plus
arm_2R 13738603..13738965 17..379 100 -> Plus
arm_2R 13746763..13747299 536..1072 100   Plus

BS12119.pep Sequence

Translation from 16 to 1071

> BS12119.pep
MSVWTTANNSGLETPTKSPITSSVPRAARSSAVITTGNHQQHHFQHVVAA
AVAAATSVATGHQFQQQFPLHAHPHPQHHSNSPTGSGSNSNNSAGFQRTS
ISNSLLQFPPPPPPSSQNQAKPRGHHRTASSSMSQSGEDLHSPTYLSWRK
LQLSRAKLKASSKTSALLSGFAMVAMVEVQLDHDTNVPPGMLIAFAICTT
LLVAVHMLALMISTCILPNIETVCNLHSISLVHESPHERLHWYIETAWAF
STLLGLILFLLEIAILCWVKFYDLSPPAAWSACVVLIPVMIIFMAFAIHF
YRSLVSHKYEVTVSGIRELEMLKEQMEQDHLEHHNNIRNNGMNYGASGDI
V*

BS12119.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:08
Subject Length Description Subject Range Query Range Score Percent Strand
olf186-F-PF 351 CG11430-PF 1..351 1..351 1838 100 Plus
olf186-F-PA 351 CG11430-PA 1..351 1..351 1838 100 Plus
olf186-F-PB 351 CG11430-PB 1..351 1..351 1838 100 Plus
olf186-F-PG 507 CG11430-PG 256..507 108..351 1208 94 Plus
olf186-F-PE 507 CG11430-PE 256..507 108..351 1208 94 Plus