Clone Sequence Records
BS12120.3prime Sequence
732 bp (732 high quality bases) assembled on 2006-06-16
> BS12120.3prime
ATGGTCTAGAAAGCTTCTACTTGTTCAGTCTTCTCTTGGCAAAGATCTGG
TAGATGCCCAGGCCAGCGGATAAGGTGCCAATAGCACCCACCTGCAGGGT
GGACAGCTTGCCGCCCCACAAATATCCTTTCGGCAGCGTGCTGACGGCGT
GCACAAAGTCGAGTGAGATCCGAACGATGGACACCATCTCCAGGCGGTGC
TTGGTCAACGTTTTCACATCCAATTCGTTTATATTATTCGTTCGGTTCAG
CTTTTCCTGATTCAGTGAAAAATTCCGCATTGTCCTCATGAGGTTCAGGT
ACACCGAAAGCACCCAGAATATGGAGTTGACATTGTCCCAGTTATCCGCA
TTCTTGACATCCACAATCTTGTGCTCGGCCAGCCAGCACACCTTCTCGAT
GGGATAGTAGAGCAAATCCACAATGTTGGCCGTCACTCCCAGCACTTGCA
TGACGCGATCGGGCTCATTCTCGCCCAAGCCATACTCCAAAGCATATTGG
ATCATGGGTATGTCGTCGATGAGACGCAGTGTGGCTCTCGCACCTGAGAT
CCTTGAGCTGGCGGTGGCGTATCGCTTGGCTAGTTCCGGATTCCGCTTGG
CATGGTAGCCAGCCACCAGTTTGGCACTGTAGCACAATGCCTTCATCACC
TTATCTCGCCCGCCATAGGAATCGATAATATCACAGAACTCGTTCACAAA
CTTTGTCGTGGTGCCCATGTCGACTGATAACT
BS12120.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:28:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13827-PA | 702 | CG13827-RA | 1..702 | 718..17 | 3510 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:44:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13827-RA | 989 | CG13827-RA | 114..815 | 718..17 | 3510 | 100 | Minus |
CG13827-RB | 909 | CG13827-RB | 100..735 | 652..17 | 3180 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:44:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23259675..23260042 | 651..284 | 1840 | 100 | Minus |
3R | 32079331 | 3R | 23260221..23260428 | 224..17 | 1040 | 100 | Minus |
3R | 32079331 | 3R | 23258478..23258548 | 718..648 | 355 | 100 | Minus |
3R | 32079331 | 3R | 23260100..23260161 | 286..225 | 310 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:44:33 has no hits.
BS12120.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:03 Download gff for
BS12120.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13827-PA | 1..702 | 17..718 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:41:27 Download gff for
BS12120.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13827-RA | 107..815 | 17..725 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:02:37 Download gff for
BS12120.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13827-RA | 107..815 | 17..725 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:02:37 Download gff for
BS12120.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23260221..23260428 | 17..224 | 100 | | Minus |
3R | 23258471..23258546 | 650..725 | 94 | -> | Minus |
3R | 23259677..23260041 | 285..649 | 100 | -> | Minus |
3R | 23260102..23260161 | 225..284 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:41:27 Download gff for
BS12120.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19084193..19084268 | 650..725 | 94 | -> | Minus |
arm_3R | 19085399..19085763 | 285..649 | 100 | -> | Minus |
arm_3R | 19085824..19085883 | 225..284 | 100 | -> | Minus |
arm_3R | 19085943..19086150 | 17..224 | 100 | | Minus |
BS12120.5prime Sequence
732 bp (694 high quality bases) assembled on 2006-06-16
> BS12120.5prime
GAAGTTATCAGTCGACATGGGCACCACGACAAAGTTTGTGAACGAGTTCT
GTGATATTATCGATTCCTATGGCGGGCGAGATAAGGTGATGAAGGCATTG
TGCTACAGTGCCAAACTGGTGGCTGGCTACCATGCCAAGCGGAATCCGGA
ACTAGCCAAGCGATACGCCACCGCCAGCTCAAGGATCTCAGGTGCGAGAG
CCACACTGCGTCTCATCGACGACATACCCATGATCCAATATGCTTTGGAG
TATGGCTTGGGCGAGAATGAGCCCGATCGCGTCATGCAAGTGCTGGGAGT
GACGGCCAACATTGTGGATTTGCTCTACTATCCCATCGAGAAGGTGTGCT
GGCTGGCCGAGCACAAGATTGTGGATGTCAAGAATGCGGATAACTGGGAC
AATGTCAACTCCATATTCTGGGTGCTTTCGGTGTACCTGAACCTCATGAG
GACAATGCGGAATTTTTCACTGAATCAGGAAAAGCTGAACCGAACGAATA
ATATAAACGAATTGGATGTGAAAACGTTGACCAAGCACCGCCTGGAGATG
GTGTCCATCGTTCGGATCTCACTCGACTTTGTGCACGCCGTCAGCACGCT
GCCGAAAGGATATTTGTGGGGCGGCAAGCTGTCCACCCTGCAGGTGGGTG
CTATTGGCACCTTATCCGCTGGCCTGGGCATCTACCAGATCTTTGCCAAG
AGAAGACTGAACAAGTAGAAGCTTTCTAGACC
BS12120.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:28:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13827-PA | 702 | CG13827-RA | 1..702 | 17..718 | 3510 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:19:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13827-RA | 989 | CG13827-RA | 114..815 | 17..718 | 3510 | 100 | Plus |
CG13827-RB | 909 | CG13827-RB | 100..735 | 83..718 | 3180 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:19:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23259675..23260042 | 84..451 | 1840 | 100 | Plus |
3R | 32079331 | 3R | 23260221..23260428 | 511..718 | 1040 | 100 | Plus |
3R | 32079331 | 3R | 23258478..23258548 | 17..87 | 355 | 100 | Plus |
3R | 32079331 | 3R | 23260100..23260161 | 449..510 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 10:19:04 has no hits.
BS12120.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:03 Download gff for
BS12120.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13827-PA | 1..702 | 17..718 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:40:19 Download gff for
BS12120.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13827-RA | 107..815 | 10..718 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:25:27 Download gff for
BS12120.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13827-RA | 107..815 | 10..718 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:25:27 Download gff for
BS12120.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23258471..23258546 | 10..85 | 94 | -> | Plus |
3R | 23259677..23260041 | 86..450 | 100 | -> | Plus |
3R | 23260102..23260161 | 451..510 | 100 | -> | Plus |
3R | 23260221..23260428 | 511..718 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:40:19 Download gff for
BS12120.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19084193..19084268 | 10..85 | 94 | -> | Plus |
arm_3R | 19085399..19085763 | 86..450 | 100 | -> | Plus |
arm_3R | 19085824..19085883 | 451..510 | 100 | -> | Plus |
arm_3R | 19085943..19086150 | 511..718 | 100 | | Plus |
BS12120.complete Sequence
734 bp assembled on 2006-11-01
GenBank Submission: FJ637077
> BS12120.complete
GAAGTTATCAGTCGACATGGGCACCACGACAAAGTTTGTGAACGAGTTCT
GTGATATTATCGATTCCTATGGCGGGCGAGATAAGGTGATGAAGGCATTG
TGCTACAGTGCCAAACTGGTGGCTGGCTACCATGCCAAGCGGAATCCGGA
ACTAGCCAAGCGATACGCCACCGCCAGCTCAAGGATCTCAGGTGCGAGAG
CCACACTGCGTCTCATCGACGACATACCCATGATCCAATATGCTTTGGAG
TATGGCTTGGGCGAGAATGAGCCCGATCGCGTCATGCAAGTGCTGGGAGT
GACGGCCAACATTGTGGATTTGCTCTACTATCCCATCGAGAAGGTGTGCT
GGCTGGCCGAGCACAAGATTGTGGATGTCAAGAATGCGGATAACTGGGAC
AATGTCAACTCCATATTCTGGGTGCTTTCGGTGTACCTGAACCTCATGAG
GACAATGCGGAATTTTTCACTGAATCAGGAAAAGCTGAACCGAACGAATA
ATATAAACGAATTGGATGTGAAAACGTTGACCAAGCACCGCCTGGAGATG
GTGTCCATCGTTCGGATCTCACTCGACTTTGTGCACGCCGTCAGCACGCT
GCCGAAAGGATATTTGTGGGGCGGCAAGCTGTCCACCCTGCAGGTGGGTG
CTATTGGCACCTTATCCGCTGGCCTGGGCATCTACCAGATCTTTGCCAAG
AGAAGACTGAACAAGTAGAAGCTTTCTAGACCAT
BS12120.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:40:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13827-RA | 702 | CG13827-PA | 1..702 | 17..718 | 3510 | 100 | Plus |
CG13827-RB | 705 | CG13827-PB | 70..705 | 83..718 | 3180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:40:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13827-RA | 989 | CG13827-RA | 114..815 | 17..718 | 3510 | 100 | Plus |
CG13827-RB | 909 | CG13827-RB | 100..735 | 83..718 | 3180 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:40:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23259675..23260042 | 84..451 | 1840 | 100 | Plus |
3R | 32079331 | 3R | 23260221..23260428 | 511..718 | 1040 | 100 | Plus |
3R | 32079331 | 3R | 23258478..23258548 | 17..87 | 355 | 100 | Plus |
3R | 32079331 | 3R | 23260100..23260161 | 449..510 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:40:02 has no hits.
BS12120.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:46:28 Download gff for
BS12120.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13827-RA | 1..702 | 17..718 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:21:30 Download gff for
BS12120.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13827-RA | 103..811 | 10..718 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:28 Download gff for
BS12120.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13827-RA | 114..815 | 17..718 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:46:28 Download gff for
BS12120.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13827-RA | 103..811 | 10..718 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:13:22 Download gff for
BS12120.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13827-RA | 114..815 | 17..718 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:13:22 Download gff for
BS12120.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23260221..23260428 | 511..718 | 100 | | Plus |
3R | 23258478..23258546 | 17..85 | 100 | -> | Plus |
3R | 23259677..23260041 | 86..450 | 100 | -> | Plus |
3R | 23260102..23260161 | 451..510 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:28 Download gff for
BS12120.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19084200..19084268 | 17..85 | 100 | -> | Plus |
arm_3R | 19085399..19085763 | 86..450 | 100 | -> | Plus |
arm_3R | 19085824..19085883 | 451..510 | 100 | -> | Plus |
arm_3R | 19085943..19086150 | 511..718 | 100 | | Plus |
BS12120.pep Sequence
Translation from 16 to 717
> BS12120.pep
MGTTTKFVNEFCDIIDSYGGRDKVMKALCYSAKLVAGYHAKRNPELAKRY
ATASSRISGARATLRLIDDIPMIQYALEYGLGENEPDRVMQVLGVTANIV
DLLYYPIEKVCWLAEHKIVDVKNADNWDNVNSIFWVLSVYLNLMRTMRNF
SLNQEKLNRTNNINELDVKTLTKHRLEMVSIVRISLDFVHAVSTLPKGYL
WGGKLSTLQVGAIGTLSAGLGIYQIFAKRRLNK*
BS12120.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13827-PA | 233 | CG13827-PA | 1..233 | 1..233 | 1202 | 100 | Plus |
CG13827-PB | 234 | CG13827-PB | 24..234 | 23..233 | 1081 | 100 | Plus |
CG33474-PB | 201 | CG33474-PB | 3..201 | 6..233 | 415 | 39 | Plus |
CG33474-PA | 201 | CG33474-PA | 3..201 | 6..233 | 415 | 39 | Plus |