Clone BS12120 Report

Search the DGRC for BS12120

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:121
Well:20
Vector:pDNR-Dual
Associated Gene/TranscriptCG13827-RA
Protein status:BS12120.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12120.3prime Sequence

732 bp (732 high quality bases) assembled on 2006-06-16

> BS12120.3prime
ATGGTCTAGAAAGCTTCTACTTGTTCAGTCTTCTCTTGGCAAAGATCTGG
TAGATGCCCAGGCCAGCGGATAAGGTGCCAATAGCACCCACCTGCAGGGT
GGACAGCTTGCCGCCCCACAAATATCCTTTCGGCAGCGTGCTGACGGCGT
GCACAAAGTCGAGTGAGATCCGAACGATGGACACCATCTCCAGGCGGTGC
TTGGTCAACGTTTTCACATCCAATTCGTTTATATTATTCGTTCGGTTCAG
CTTTTCCTGATTCAGTGAAAAATTCCGCATTGTCCTCATGAGGTTCAGGT
ACACCGAAAGCACCCAGAATATGGAGTTGACATTGTCCCAGTTATCCGCA
TTCTTGACATCCACAATCTTGTGCTCGGCCAGCCAGCACACCTTCTCGAT
GGGATAGTAGAGCAAATCCACAATGTTGGCCGTCACTCCCAGCACTTGCA
TGACGCGATCGGGCTCATTCTCGCCCAAGCCATACTCCAAAGCATATTGG
ATCATGGGTATGTCGTCGATGAGACGCAGTGTGGCTCTCGCACCTGAGAT
CCTTGAGCTGGCGGTGGCGTATCGCTTGGCTAGTTCCGGATTCCGCTTGG
CATGGTAGCCAGCCACCAGTTTGGCACTGTAGCACAATGCCTTCATCACC
TTATCTCGCCCGCCATAGGAATCGATAATATCACAGAACTCGTTCACAAA
CTTTGTCGTGGTGCCCATGTCGACTGATAACT

BS12120.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:28:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG13827-PA 702 CG13827-RA 1..702 718..17 3510 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:44:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG13827-RA 989 CG13827-RA 114..815 718..17 3510 100 Minus
CG13827-RB 909 CG13827-RB 100..735 652..17 3180 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:44:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23259675..23260042 651..284 1840 100 Minus
3R 32079331 3R 23260221..23260428 224..17 1040 100 Minus
3R 32079331 3R 23258478..23258548 718..648 355 100 Minus
3R 32079331 3R 23260100..23260161 286..225 310 100 Minus
Blast to na_te.dros performed on 2015-02-12 17:44:33 has no hits.

BS12120.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:03 Download gff for BS12120.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13827-PA 1..702 17..718 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:41:27 Download gff for BS12120.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13827-RA 107..815 17..725 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:02:37 Download gff for BS12120.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13827-RA 107..815 17..725 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:02:37 Download gff for BS12120.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23260221..23260428 17..224 100   Minus
3R 23258471..23258546 650..725 94 -> Minus
3R 23259677..23260041 285..649 100 -> Minus
3R 23260102..23260161 225..284 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:41:27 Download gff for BS12120.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19084193..19084268 650..725 94 -> Minus
arm_3R 19085399..19085763 285..649 100 -> Minus
arm_3R 19085824..19085883 225..284 100 -> Minus
arm_3R 19085943..19086150 17..224 100   Minus

BS12120.5prime Sequence

732 bp (694 high quality bases) assembled on 2006-06-16

> BS12120.5prime
GAAGTTATCAGTCGACATGGGCACCACGACAAAGTTTGTGAACGAGTTCT
GTGATATTATCGATTCCTATGGCGGGCGAGATAAGGTGATGAAGGCATTG
TGCTACAGTGCCAAACTGGTGGCTGGCTACCATGCCAAGCGGAATCCGGA
ACTAGCCAAGCGATACGCCACCGCCAGCTCAAGGATCTCAGGTGCGAGAG
CCACACTGCGTCTCATCGACGACATACCCATGATCCAATATGCTTTGGAG
TATGGCTTGGGCGAGAATGAGCCCGATCGCGTCATGCAAGTGCTGGGAGT
GACGGCCAACATTGTGGATTTGCTCTACTATCCCATCGAGAAGGTGTGCT
GGCTGGCCGAGCACAAGATTGTGGATGTCAAGAATGCGGATAACTGGGAC
AATGTCAACTCCATATTCTGGGTGCTTTCGGTGTACCTGAACCTCATGAG
GACAATGCGGAATTTTTCACTGAATCAGGAAAAGCTGAACCGAACGAATA
ATATAAACGAATTGGATGTGAAAACGTTGACCAAGCACCGCCTGGAGATG
GTGTCCATCGTTCGGATCTCACTCGACTTTGTGCACGCCGTCAGCACGCT
GCCGAAAGGATATTTGTGGGGCGGCAAGCTGTCCACCCTGCAGGTGGGTG
CTATTGGCACCTTATCCGCTGGCCTGGGCATCTACCAGATCTTTGCCAAG
AGAAGACTGAACAAGTAGAAGCTTTCTAGACC

BS12120.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:28:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG13827-PA 702 CG13827-RA 1..702 17..718 3510 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:19:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG13827-RA 989 CG13827-RA 114..815 17..718 3510 100 Plus
CG13827-RB 909 CG13827-RB 100..735 83..718 3180 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:19:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23259675..23260042 84..451 1840 100 Plus
3R 32079331 3R 23260221..23260428 511..718 1040 100 Plus
3R 32079331 3R 23258478..23258548 17..87 355 100 Plus
3R 32079331 3R 23260100..23260161 449..510 310 100 Plus
Blast to na_te.dros performed on 2015-02-06 10:19:04 has no hits.

BS12120.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:03 Download gff for BS12120.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13827-PA 1..702 17..718 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:40:19 Download gff for BS12120.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13827-RA 107..815 10..718 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:25:27 Download gff for BS12120.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13827-RA 107..815 10..718 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:25:27 Download gff for BS12120.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23258471..23258546 10..85 94 -> Plus
3R 23259677..23260041 86..450 100 -> Plus
3R 23260102..23260161 451..510 100 -> Plus
3R 23260221..23260428 511..718 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:40:19 Download gff for BS12120.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19084193..19084268 10..85 94 -> Plus
arm_3R 19085399..19085763 86..450 100 -> Plus
arm_3R 19085824..19085883 451..510 100 -> Plus
arm_3R 19085943..19086150 511..718 100   Plus

BS12120.complete Sequence

734 bp assembled on 2006-11-01

GenBank Submission: FJ637077

> BS12120.complete
GAAGTTATCAGTCGACATGGGCACCACGACAAAGTTTGTGAACGAGTTCT
GTGATATTATCGATTCCTATGGCGGGCGAGATAAGGTGATGAAGGCATTG
TGCTACAGTGCCAAACTGGTGGCTGGCTACCATGCCAAGCGGAATCCGGA
ACTAGCCAAGCGATACGCCACCGCCAGCTCAAGGATCTCAGGTGCGAGAG
CCACACTGCGTCTCATCGACGACATACCCATGATCCAATATGCTTTGGAG
TATGGCTTGGGCGAGAATGAGCCCGATCGCGTCATGCAAGTGCTGGGAGT
GACGGCCAACATTGTGGATTTGCTCTACTATCCCATCGAGAAGGTGTGCT
GGCTGGCCGAGCACAAGATTGTGGATGTCAAGAATGCGGATAACTGGGAC
AATGTCAACTCCATATTCTGGGTGCTTTCGGTGTACCTGAACCTCATGAG
GACAATGCGGAATTTTTCACTGAATCAGGAAAAGCTGAACCGAACGAATA
ATATAAACGAATTGGATGTGAAAACGTTGACCAAGCACCGCCTGGAGATG
GTGTCCATCGTTCGGATCTCACTCGACTTTGTGCACGCCGTCAGCACGCT
GCCGAAAGGATATTTGTGGGGCGGCAAGCTGTCCACCCTGCAGGTGGGTG
CTATTGGCACCTTATCCGCTGGCCTGGGCATCTACCAGATCTTTGCCAAG
AGAAGACTGAACAAGTAGAAGCTTTCTAGACCAT

BS12120.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:40:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG13827-RA 702 CG13827-PA 1..702 17..718 3510 100 Plus
CG13827-RB 705 CG13827-PB 70..705 83..718 3180 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:40:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG13827-RA 989 CG13827-RA 114..815 17..718 3510 100 Plus
CG13827-RB 909 CG13827-RB 100..735 83..718 3180 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:40:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23259675..23260042 84..451 1840 100 Plus
3R 32079331 3R 23260221..23260428 511..718 1040 100 Plus
3R 32079331 3R 23258478..23258548 17..87 355 100 Plus
3R 32079331 3R 23260100..23260161 449..510 310 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:40:02 has no hits.

BS12120.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:46:28 Download gff for BS12120.complete
Subject Subject Range Query Range Percent Splice Strand
CG13827-RA 1..702 17..718 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:21:30 Download gff for BS12120.complete
Subject Subject Range Query Range Percent Splice Strand
CG13827-RA 103..811 10..718 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:28 Download gff for BS12120.complete
Subject Subject Range Query Range Percent Splice Strand
CG13827-RA 114..815 17..718 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:46:28 Download gff for BS12120.complete
Subject Subject Range Query Range Percent Splice Strand
CG13827-RA 103..811 10..718 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:13:22 Download gff for BS12120.complete
Subject Subject Range Query Range Percent Splice Strand
CG13827-RA 114..815 17..718 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:13:22 Download gff for BS12120.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23260221..23260428 511..718 100   Plus
3R 23258478..23258546 17..85 100 -> Plus
3R 23259677..23260041 86..450 100 -> Plus
3R 23260102..23260161 451..510 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:28 Download gff for BS12120.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19084200..19084268 17..85 100 -> Plus
arm_3R 19085399..19085763 86..450 100 -> Plus
arm_3R 19085824..19085883 451..510 100 -> Plus
arm_3R 19085943..19086150 511..718 100   Plus

BS12120.pep Sequence

Translation from 16 to 717

> BS12120.pep
MGTTTKFVNEFCDIIDSYGGRDKVMKALCYSAKLVAGYHAKRNPELAKRY
ATASSRISGARATLRLIDDIPMIQYALEYGLGENEPDRVMQVLGVTANIV
DLLYYPIEKVCWLAEHKIVDVKNADNWDNVNSIFWVLSVYLNLMRTMRNF
SLNQEKLNRTNNINELDVKTLTKHRLEMVSIVRISLDFVHAVSTLPKGYL
WGGKLSTLQVGAIGTLSAGLGIYQIFAKRRLNK*

BS12120.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG13827-PA 233 CG13827-PA 1..233 1..233 1202 100 Plus
CG13827-PB 234 CG13827-PB 24..234 23..233 1081 100 Plus
CG33474-PB 201 CG33474-PB 3..201 6..233 415 39 Plus
CG33474-PA 201 CG33474-PA 3..201 6..233 415 39 Plus