BS12121.complete Sequence
1118 bp assembled on 2006-11-01
GenBank Submission: FJ637078
> BS12121.complete
GAAGTTATCAGTCGACATGGCCGATACAAAGGGCTTTTCCAGCATCGAGA
CGCCCGGCTATGTGGGCTTCGCCAACCTGCCCAACCAGGTGCATCGAAAG
TCCGTGAAAAAGGGATTCGAGTTCACCCTAATGGTGGTGGGCGAGTCCGG
ACTGGGCAAGTCCACGCTGGTCAATAGTCTCTTTCTCACCGATCTCTATC
CCGAGCGCATTATTCCGGACGCCATAGAGAAACAAAAGCAAACCGTAAAG
CTGGAGGCATCGACGGTGGAGATCGAGGAGCGCGGCGTCAAGCTAAGATT
GACGGTGGTGGACACACCCGGATTCGGCGATGCCATCGACAACTCCAACA
GCTTTGGTGCCATACTCGAGTACATCGATGAGCAATACGAGCGCTTCCTG
CGCGACGAGAGCGGCCTGAACAGACGCAACATTGTGGACAATCGCATTCA
CTGCTGTTTCTACTTTATATCGCCGTTCGGTCATGGCCTAAAACCCCTGG
ACGTAGAGTTCATGAAGAAGCTGCACTCTAAAGTTAACATTGTGCCCGTG
ATCGCAAAGGCCGATTGTCTCACAAAGAAGGAGATCCTGCGCCTGAAGTG
CCGCATTATGCAGGAGATCGAGAGCCACGGCATCAAGATCTACCCACTGC
CAGACTGTGATTCCGATGAGGACGAGGACTACAAGGAGCAGGTGAAGCAA
CTTAAGGAAGCTGTGCCTTTCGCCGTCTGCGGCGCCAACACACTGCTCGA
GGTCAAGGGCAAGAAGGTGCGCGGTCGTCTGTATCCATGGGGCGTGGTCG
AGGTAGAGAATCCCGATCACTGCGACTTCATCAAGCTGCGCACGATGCTC
ATCACCCACATGCAGGACCTGCAGGAGGTCACGCAGGAGGTGCACTACGA
AAACTACCGCTCCGACCGCCTCGCCAAGGGCATCAAGGGCAAGGAGAACG
GCGTGAAGGCCGAGCGGGACAGCAGCTCGCAGGTGGTGTCGAACAGCGTG
CTCGGCGAGAAGGACCGCATCCTGCAAGAGAAGGAGGCCGAGCTGCGGCG
CATGCAGGAGATGCTCGCCCAGATGCAGGCGCGCATGCAGGCCCAGCAGT
GAAAGCTTTCTAGACCAT
BS12121.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:26:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sep1-RA | 1086 | CG1403-PA | 1..1086 | 17..1102 | 5430 | 100 | Plus |
| Sep4-RG | 1128 | CG9699-PG | 67..890 | 89..909 | 500 | 71 | Plus |
| Sep4-RC | 1284 | CG9699-PC | 223..1046 | 89..909 | 500 | 71 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:26:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sep1-RA | 2026 | CG1403-RA | 91..1176 | 17..1102 | 5430 | 100 | Plus |
| Sep4-RG | 2433 | CG9699-RG | 437..1260 | 89..909 | 500 | 71 | Plus |
| Sep4-RC | 2896 | CG9699-RC | 900..1723 | 89..909 | 500 | 71 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:26:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 21360155..21360521 | 486..852 | 1835 | 100 | Plus |
| X | 23542271 | X | 21359769..21360029 | 226..486 | 1305 | 100 | Plus |
| X | 23542271 | X | 21360589..21360838 | 853..1102 | 1250 | 100 | Plus |
| X | 23542271 | X | 21359512..21359704 | 35..227 | 965 | 100 | Plus |
| X | 23542271 | X | 16686598..16686707 | 198..89 | 340 | 87.3 | Minus |
| 2R | 25286936 | 2R | 8238415..8238535 | 54..174 | 320 | 84.3 | Plus |
| 2R | 25286936 | 2R | 8238637..8238734 | 276..373 | 205 | 80.6 | Plus |
| X | 23542271 | X | 16686459..16686534 | 337..262 | 200 | 84.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:26:21 has no hits.
BS12121.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:46:29 Download gff for
BS12121.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sep1-RA | 1..1086 | 17..1102 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:21:32 Download gff for
BS12121.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sep1-RA | 101..1188 | 17..1106 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:43:07 Download gff for
BS12121.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sep1-RA | 101..1185 | 17..1101 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:46:30 Download gff for
BS12121.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sep1-RA | 101..1188 | 17..1106 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:11:32 Download gff for
BS12121.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sep1-RA | 91..1175 | 17..1101 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:11:32 Download gff for
BS12121.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 21359771..21360029 | 228..486 | 100 | -> | Plus |
| X | 21358376..21358393 | 17..34 | 100 | -> | Plus |
| X | 21359512..21359704 | 35..227 | 100 | -> | Plus |
| X | 21360156..21360521 | 487..852 | 100 | -> | Plus |
| X | 21360589..21360837 | 853..1101 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:43:07 Download gff for
BS12121.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 21229403..21229420 | 17..34 | 100 | -> | Plus |
| arm_X | 21230539..21230731 | 35..227 | 100 | -> | Plus |
| arm_X | 21230798..21231056 | 228..486 | 100 | -> | Plus |
| arm_X | 21231183..21231548 | 487..852 | 100 | -> | Plus |
| arm_X | 21231616..21231864 | 853..1101 | 100 | | Plus |
BS12121.pep Sequence
Translation from 16 to 1101
> BS12121.pep
MADTKGFSSIETPGYVGFANLPNQVHRKSVKKGFEFTLMVVGESGLGKST
LVNSLFLTDLYPERIIPDAIEKQKQTVKLEASTVEIEERGVKLRLTVVDT
PGFGDAIDNSNSFGAILEYIDEQYERFLRDESGLNRRNIVDNRIHCCFYF
ISPFGHGLKPLDVEFMKKLHSKVNIVPVIAKADCLTKKEILRLKCRIMQE
IESHGIKIYPLPDCDSDEDEDYKEQVKQLKEAVPFAVCGANTLLEVKGKK
VRGRLYPWGVVEVENPDHCDFIKLRTMLITHMQDLQEVTQEVHYENYRSD
RLAKGIKGKENGVKAERDSSSQVVSNSVLGEKDRILQEKEAELRRMQEML
AQMQARMQAQQ*
BS12121.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sep1-PA | 361 | CG1403-PA | 1..361 | 1..361 | 1861 | 100 | Plus |
| Sep4-PG | 375 | CG9699-PG | 13..359 | 15..358 | 1096 | 59.5 | Plus |
| Sep4-PC | 427 | CG9699-PC | 65..411 | 15..358 | 1096 | 59.5 | Plus |
| Sep4-PE | 427 | CG9699-PE | 65..411 | 15..358 | 1096 | 59.5 | Plus |
| Sep4-PD | 427 | CG9699-PD | 65..411 | 15..358 | 1096 | 59.5 | Plus |
