BS12123.complete Sequence
833 bp assembled on 2010-07-02
GenBank Submission: KX804053
> BS12123.complete
GAAGTTATCAGTCGACATGCCAAATAAATCCGAGGAGCTGGGCGAAACGC
AACTGACCAAAAGACAGAGGAGGAAGCAGACGATCTGGACGCGGGAGAAG
ATCGCCAAGCTAATCGAACTTTACCGCTCGTCGGACTGCTTGTGGAACCA
CTATTCCGAGCTATATAAAAACAAGGATTGCAGGGCTAAAGCCATCGAAT
CCATCTGCGCTTCGCTTGAAATAACGAAACACGACTATGGCAAGAAGGTG
CACAACCTGCGCAATCAATTCAATGCAGAGCTCAAGAAGTTGGAGAGGAG
GCTCGAGGAGTCTGGAGGAGATCGAGATTCGGAGAAGGCTTGTCGATGGG
AGCACTTCAAGACGTTGATGTTCCTACGATCTGTTATAGAACCACGACCA
GGCTATCAACAAGGTGCTCCGGGCAAGAAATTGGTATCGAAGCTGGACAT
GTGCTACCCGGATCAGGATGTGGAAAAGCAGAGCCAATCCTCGATAGAAA
GTCTGGAATCCATGATCATAGAGAACGATGCAGAAATCTGTCAGCCTCCG
AAGGTCAGCGAACCCATTCCTCCGATGCCTCCTGAACCTGCGCCGTCTTC
CAAATTCGTTGATCCAAATCGAACTGTCGAAGCTCCAGCTGCTCCCTCTC
CCTTCCACTTACCATTAAGTGGTCGTGATCAATGGGACGCATTTGGCGAA
CTAATCGCCAGTGAATTCCGTAACCTGAACTCTGAAGTTTCGCGCAAGAG
GCTGAAGCGGAAAATAATGCAAGTTATGCTGGAAGTCGGCGAAGAAGATG
ATCTTACAAACAGTTGAAAGCTTTCTAGACCAT
BS12123.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:19:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10904-RB | 801 | CG10904-PB | 1..801 | 17..817 | 4005 | 100 | Plus |
| CG10904-RA | 801 | CG10904-PA | 1..801 | 17..817 | 4005 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:19:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10904-RB | 1070 | CG10904-RB | 68..868 | 17..817 | 4005 | 100 | Plus |
| CG10904-RA | 950 | CG10904-RA | 68..868 | 17..817 | 4005 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:19:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23969596..23970006 | 427..17 | 2055 | 100 | Minus |
| 2R | 25286936 | 2R | 23969143..23969534 | 817..426 | 1960 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:19:50 has no hits.
BS12123.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-02 13:24:44 Download gff for
BS12123.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10904-RA | 64..863 | 17..816 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:16:45 Download gff for
BS12123.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10904-RA | 68..867 | 17..816 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:26:55 Download gff for
BS12123.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10904-RA | 68..867 | 17..816 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:26:55 Download gff for
BS12123.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23969144..23969532 | 428..816 | 100 | <- | Minus |
| 2R | 23969596..23970006 | 17..427 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:16:45 Download gff for
BS12123.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19856667..19857055 | 428..816 | 100 | <- | Minus |
| arm_2R | 19857119..19857529 | 17..427 | 100 | | Minus |
BS12123.pep Sequence
Translation from 16 to 816
> BS12123.pep
MPNKSEELGETQLTKRQRRKQTIWTREKIAKLIELYRSSDCLWNHYSELY
KNKDCRAKAIESICASLEITKHDYGKKVHNLRNQFNAELKKLERRLEESG
GDRDSEKACRWEHFKTLMFLRSVIEPRPGYQQGAPGKKLVSKLDMCYPDQ
DVEKQSQSSIESLESMIIENDAEICQPPKVSEPIPPMPPEPAPSSKFVDP
NRTVEAPAAPSPFHLPLSGRDQWDAFGELIASEFRNLNSEVSRKRLKRKI
MQVMLEVGEEDDLTNS*
BS12123.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:34:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10904-PB | 266 | CG10904-PB | 1..266 | 1..266 | 1400 | 100 | Plus |
| CG10904-PA | 266 | CG10904-PA | 1..266 | 1..266 | 1400 | 100 | Plus |
