Clone Sequence Records
BS12129.3prime Sequence
785 bp (767 high quality bases) assembled on 2006-06-16
> BS12129.3prime
ATGGTCTAGAAAGCTTTCACGTTTCCTCATTGCCATCGCAGGCGGTGTTT
CTAAGCAGACGGCTGAGCCGCTTGCCAATGGGCTTGGGGTACTGGTTGTT
CTTCAATAGAAACTCCTTGGACTGGTGCTCCACGGCTCCGTTGTCTAGTT
GGTACTTGCACAGCGTGTGCAGCGGTCGCACGAGCGTTTGCCTCAGCTCT
GGCCGAGATTCCAGCACTGCCAGGCATTGCGCAGCGGTCTCTAGTGTGCT
AAGGCATCCTTCAGTAGGCTGTGTACGGATGATGTAGTCACTTATACCCA
CGGCGATGAGTTTCACCTGTCGCAGGCGGTGTAGAGCCGGACTGCTAGCG
TAAATGGCTTTAGCCTGAGGCCAGGTACCATCGATGAGCACCAGTGTATA
AGGACCCGCACTGTGGTCCACCTCTTCCAGTGGGACCGAGTCCCGACTGG
GATACAGAAGCAGTGTTTGTGGAGAGTCCAAAATCCTCTGCAGATCAGCA
TGGTTTCTATGGTTTGGAAACCGCTTGCCTTTGTAGACGACACATTTTCC
CGGTTCCAAACCCAACTGCAGCATCAGTGCAGTGCGTAGCGATCTCTTCT
CCTCTGCAGGGTGTTGCAGTATAACAATCTGTGAGGACACCGCCTCAGGT
GGATGCGGTAAAGCCGGGCACCAGCAAACAACCACGGGTCGTTTGCATTT
CTCGCACTTGTTGCGTCTGTTGGGCGGATCGGCGCTGATGCCCACGAGGT
CCAGCCACGCGTCATCCTCCATGTCGACTGATAAC
BS12129.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:28:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10050-PA | 756 | CG10050-RA | 1..756 | 772..17 | 3780 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:51:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10050-RA | 1894 | CG10050-RA | 84..843 | 772..13 | 3785 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:51:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7250020..7250699 | 692..13 | 3385 | 99.9 | Minus |
| 3R | 32079331 | 3R | 7249878..7249957 | 772..693 | 400 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 11:51:39 has no hits.
BS12129.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:04 Download gff for
BS12129.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10050-PA | 1..756 | 17..772 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:37:30 Download gff for
BS12129.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10050-RA | 81..843 | 13..779 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:42:45 Download gff for
BS12129.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10050-RA | 81..843 | 13..779 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:42:45 Download gff for
BS12129.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7249875..7249957 | 693..779 | 95 | -> | Minus |
| 3R | 7250020..7250699 | 13..692 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:37:30 Download gff for
BS12129.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3075597..3075679 | 693..779 | 95 | -> | Minus |
| arm_3R | 3075742..3076421 | 13..692 | 99 | | Minus |
BS12129.5prime Sequence
786 bp (760 high quality bases) assembled on 2006-06-16
> BS12129.5prime
GAAGTTATCAGTCGACATGGAGGATGACGCGTGGCTGGACCTCGTGGGCA
TCAGCGCCGATCCGCCCAACAGACGCAACAAGTGCGAGAAATGCAAACGA
CCCGTGGTTGTTTGCTGGTGCCCGGCTTTACCGCATCCACCTGAGGCGGT
GTCCTCACAGATTGTTATACTGCAACACCCTGCAGAGGAGAAGAGATCGC
TACGCACTGCACTGATGCTGCAGTTGGGTTTGGAACCGGGAAAATGTGTC
GTCTACAAAGGCAAGCGGTTTCCAAACCATAGAAACCATGCTGATCTGCA
GAGGATTTTGGACTCTCCACAAACACTGCTTCTGTATCCCAGTCGGGACT
CGGTCCCACTGGAAGAGGTGGACCACAGTGCGGGTCCTTATACACTGGTG
CTCATCGATGGTACCTGGCCTCAGGCTAAAGCCATTTACGCTAGCAGTCC
GGCTCTACACCGCCTGCGACAGGTGAAACTCATCGCCGTGGGTATAAGTG
ACTACATCATCCGTACACAGCCTACTGAAGGATGCCTTAGCACACTAGAG
ACCGCTGCGCAATGCCTGGCAGTGCTGGAATCTCGGCCAGAGCTGAGGCA
AACGCTCGTGCGACCGCTGCACACGCTGTGCAAGTACCAACTAGACAACG
GAGCCGTGGAGCACCAGTCCAAGGAGTTTCTATTGAAGAACAACCAGTAC
CCCAAGCCCATTGGCAAGCGGCTCAGCCGTCTGCTTAGAAACACCGCCTG
CGATGGCAATGAGGAAACGTGAAAGCTTTTCTAGAC
BS12129.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:28:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10050-PA | 756 | CG10050-RA | 1..756 | 17..772 | 3780 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:42:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10050-RA | 1894 | CG10050-RA | 84..843 | 17..776 | 3785 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:42:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7250020..7250699 | 97..776 | 3385 | 99.9 | Plus |
| 3R | 32079331 | 3R | 7249878..7249957 | 17..96 | 400 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:42:39 has no hits.
BS12129.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:05 Download gff for
BS12129.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10050-PA | 1..756 | 17..772 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:19:10 Download gff for
BS12129.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10050-RA | 81..843 | 10..776 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:04:13 Download gff for
BS12129.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10050-RA | 81..843 | 10..776 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:04:13 Download gff for
BS12129.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7249875..7249957 | 10..96 | 95 | -> | Plus |
| 3R | 7250020..7250699 | 97..776 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:19:10 Download gff for
BS12129.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3075597..3075679 | 10..96 | 95 | -> | Plus |
| arm_3R | 3075742..3076421 | 97..776 | 99 | | Plus |
BS12129.complete Sequence
788 bp assembled on 2006-11-01
GenBank Submission: FJ637079
> BS12129.complete
GAAGTTATCAGTCGACATGGAGGATGACGCGTGGCTGGACCTCGTGGGCA
TCAGCGCCGATCCGCCCAACAGACGCAACAAGTGCGAGAAATGCAAACGA
CCCGTGGTTGTTTGCTGGTGCCCGGCTTTACCGCATCCACCTGAGGCGGT
GTCCTCACAGATTGTTATACTGCAACACCCTGCAGAGGAGAAGAGATCGC
TACGCACTGCACTGATGCTGCAGTTGGGTTTGGAACCGGGAAAATGTGTC
GTCTACAAAGGCAAGCGGTTTCCAAACCATAGAAACCATGCTGATCTGCA
GAGGATTTTGGACTCTCCACAAACACTGCTTCTGTATCCCAGTCGGGACT
CGGTCCCACTGGAAGAGGTGGACCACAGTGCGGGTCCTTATACACTGGTG
CTCATCGATGGTACCTGGCCTCAGGCTAAAGCCATTTACGCTAGCAGTCC
GGCTCTACACCGCCTGCGACAGGTGAAACTCATCGCCGTGGGTATAAGTG
ACTACATCATCCGTACACAGCCTACTGAAGGATGCCTTAGCACACTAGAG
ACCGCTGCGCAATGCCTGGCAGTGCTGGAATCTCGGCCAGAGCTGAGGCA
AACGCTCGTGCGACCGCTGCACACGCTGTGCAAGTACCAACTAGACAACG
GAGCCGTGGAGCACCAGTCCAAGGAGTTTCTATTGAAGAACAACCAGTAC
CCCAAGCCCATTGGCAAGCGGCTCAGCCGTCTGCTTAGAAACACCGCCTG
CGATGGCAATGAGGAAACGTGAAAGCTTTCTAGACCAT
BS12129.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:46:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10050-RA | 756 | CG10050-PA | 1..756 | 17..772 | 3780 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:46:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10050-RA | 1894 | CG10050-RA | 84..843 | 17..776 | 3785 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:46:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7250020..7250699 | 97..776 | 3385 | 99.9 | Plus |
| 3R | 32079331 | 3R | 7249878..7249957 | 17..96 | 400 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:46:25 has no hits.
BS12129.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:46:31 Download gff for
BS12129.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10050-RA | 1..756 | 17..772 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:21:34 Download gff for
BS12129.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10050-RA | 77..839 | 10..776 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:42:17 Download gff for
BS12129.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10050-RA | 84..838 | 17..771 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:46:31 Download gff for
BS12129.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10050-RA | 77..839 | 10..776 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:59:58 Download gff for
BS12129.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10050-RA | 84..838 | 17..771 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:59:58 Download gff for
BS12129.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7249878..7249957 | 17..96 | 100 | -> | Plus |
| 3R | 7250020..7250694 | 97..771 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:42:17 Download gff for
BS12129.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3075600..3075679 | 17..96 | 100 | -> | Plus |
| arm_3R | 3075742..3076416 | 97..771 | 100 | | Plus |
BS12129.pep Sequence
Translation from 16 to 771
> BS12129.pep
MEDDAWLDLVGISADPPNRRNKCEKCKRPVVVCWCPALPHPPEAVSSQIV
ILQHPAEEKRSLRTALMLQLGLEPGKCVVYKGKRFPNHRNHADLQRILDS
PQTLLLYPSRDSVPLEEVDHSAGPYTLVLIDGTWPQAKAIYASSPALHRL
RQVKLIAVGISDYIIRTQPTEGCLSTLETAAQCLAVLESRPELRQTLVRP
LHTLCKYQLDNGAVEHQSKEFLLKNNQYPKPIGKRLSRLLRNTACDGNEE
T*
BS12129.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10050-PA | 251 | CG10050-PA | 1..251 | 1..251 | 1329 | 100 | Plus |
