Clone Sequence Records
BS12130.3prime Sequence
708 bp (708 high quality bases) assembled on 2006-06-16
> BS12130.3prime
ATGGTCTAGAAAGCTTTTAATTACTCAAAACTTGCTGGTTGGGTTCGGGA
GTGGCGTCCGGGAGCTGAGAGGTGCTTCGTCCGTGGTAAAGATTACCGGC
CATATCGATGGCGAAATTGTGGTCCACGGGATTGGCCAACGCTGTCTCAA
TGGCTGCATCCAAGTTTTCCCTAGTGATATAGTTCTTGGAACGCTCAATC
TCGAGCAGCACCCGCTGGTTGGCCTGCTCCTTGCGCTCCTCCTCGCGCAG
CTGTTGTGCCTCCAATCGCTCCTGAATATAGGCCACCTTTTCCTCACGCT
TCTTGGCCAATCGCTGATCACGCTCCTTGGCTATGGCAGCGTTCCAGGCA
GCATTGGCATCCAGGCATTTCTGGAACTCGGCCTCCTCCTGCTCGGGAGT
GAGCACGATGTGATCTGCTGTGGATGTTTCCTCGTGGCGGACGACTTCCT
CCCTTAGAAACTGACGCACTGAGCGAAGCTGCGTTTTGTACTGGTTGTGT
AGCCTCATGAGCTCCGTGCGCTCCTCCTCCGACTGCTTCTTGCGTTCAGG
CACGCGGAACATCTTGCTCTTGGCCACCGGCAGCCATCGCGGTTTCCTGC
GCCAGCGGACGAACTCGAGGGCGAAACTATTTCCGACCGTCTTCCCGGTG
GGCAGGGTGGACTGCGTCAGCAGCTGGCATCCCGCTCGCAGCATGTCGAC
TGATAACT
BS12130.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:28:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7354-PA | 678 | mRpS26-RA | 1..678 | 694..17 | 3390 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:23:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS26-RA | 825 | CG7354-RA | 84..761 | 694..17 | 3390 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:23:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18106967..18107435 | 485..17 | 2345 | 100 | Minus |
3L | 28110227 | 3L | 18106662..18106870 | 694..486 | 1045 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:23:18 has no hits.
BS12130.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:05 Download gff for
BS12130.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7354-PA | 1..678 | 17..694 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:05:44 Download gff for
BS12130.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS26-RA | 84..761 | 17..694 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:41:16 Download gff for
BS12130.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS26-RA | 84..761 | 17..694 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:41:16 Download gff for
BS12130.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18106662..18106870 | 486..694 | 100 | -> | Minus |
3L | 18106967..18107435 | 17..485 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:05:44 Download gff for
BS12130.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18099762..18099970 | 486..694 | 100 | -> | Minus |
arm_3L | 18100067..18100535 | 17..485 | 100 | | Minus |
BS12130.5prime Sequence
708 bp (708 high quality bases) assembled on 2006-06-16
> BS12130.5prime
GAAGTTATCAGTCGACATGCTGCGAGCGGGATGCCAGCTGCTGACGCAGT
CCACCCTGCCCACCGGGAAGACGGTCGGAAATAGTTTCGCCCTCGAGTTC
GTCCGCTGGCGCAGGAAACCGCGATGGCTGCCGGTGGCCAAGAGCAAGAT
GTTCCGCGTGCCTGAACGCAAGAAGCAGTCGGAGGAGGAGCGCACGGAGC
TCATGAGGCTACACAACCAGTACAAAACGCAGCTTCGCTCAGTGCGTCAG
TTTCTAAGGGAGGAAGTCGTCCGCCACGAGGAAACATCCACAGCAGATCA
CATCGTGCTCACTCCCGAGCAGGAGGAGGCCGAGTTCCAGAAATGCCTGG
ATGCCAATGCTGCCTGGAACGCTGCCATAGCCAAGGAGCGTGATCAGCGA
TTGGCCAAGAAGCGTGAGGAAAAGGTGGCCTATATTCAGGAGCGATTGGA
GGCACAACAGCTGCGCGAGGAGGAGCGCAAGGAGCAGGCCAACCAGCGGG
TGCTGCTCGAGATTGAGCGTTCCAAGAACTATATCACTAGGGAAAACTTG
GATGCAGCCATTGAGACAGCGTTGGCCAATCCCGTGGACCACAATTTCGC
CATCGATATGGCCGGTAATCTTTACCACGGACGAAGCACCTCTCAGCTCC
CGGACGCCACTCCCGAACCCAACCAGCAAGTTTTGAGTAATTAAAAGCTT
TCTAGACC
BS12130.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:28:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7354-PA | 678 | mRpS26-RA | 1..678 | 17..694 | 3390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:38:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS26-RA | 825 | CG7354-RA | 84..761 | 17..694 | 3390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:38:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18106967..18107435 | 226..694 | 2345 | 100 | Plus |
3L | 28110227 | 3L | 18106662..18106870 | 17..225 | 1045 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 06:38:36 has no hits.
BS12130.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:06 Download gff for
BS12130.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7354-PA | 1..678 | 17..694 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:29:55 Download gff for
BS12130.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS26-RA | 84..761 | 17..694 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:38:16 Download gff for
BS12130.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS26-RA | 84..761 | 17..694 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:38:16 Download gff for
BS12130.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18106662..18106870 | 17..225 | 100 | -> | Plus |
3L | 18106967..18107435 | 226..694 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:29:55 Download gff for
BS12130.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18099762..18099970 | 17..225 | 100 | -> | Plus |
arm_3L | 18100067..18100535 | 226..694 | 100 | | Plus |
BS12130.complete Sequence
710 bp assembled on 2006-11-01
GenBank Submission: FJ637080
> BS12130.complete
GAAGTTATCAGTCGACATGCTGCGAGCGGGATGCCAGCTGCTGACGCAGT
CCACCCTGCCCACCGGGAAGACGGTCGGAAATAGTTTCGCCCTCGAGTTC
GTCCGCTGGCGCAGGAAACCGCGATGGCTGCCGGTGGCCAAGAGCAAGAT
GTTCCGCGTGCCTGAACGCAAGAAGCAGTCGGAGGAGGAGCGCACGGAGC
TCATGAGGCTACACAACCAGTACAAAACGCAGCTTCGCTCAGTGCGTCAG
TTTCTAAGGGAGGAAGTCGTCCGCCACGAGGAAACATCCACAGCAGATCA
CATCGTGCTCACTCCCGAGCAGGAGGAGGCCGAGTTCCAGAAATGCCTGG
ATGCCAATGCTGCCTGGAACGCTGCCATAGCCAAGGAGCGTGATCAGCGA
TTGGCCAAGAAGCGTGAGGAAAAGGTGGCCTATATTCAGGAGCGATTGGA
GGCACAACAGCTGCGCGAGGAGGAGCGCAAGGAGCAGGCCAACCAGCGGG
TGCTGCTCGAGATTGAGCGTTCCAAGAACTATATCACTAGGGAAAACTTG
GATGCAGCCATTGAGACAGCGTTGGCCAATCCCGTGGACCACAATTTCGC
CATCGATATGGCCGGTAATCTTTACCACGGACGAAGCACCTCTCAGCTCC
CGGACGCCACTCCCGAACCCAACCAGCAAGTTTTGAGTAATTAAAAGCTT
TCTAGACCAT
BS12130.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:10:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS26-RA | 678 | CG7354-PA | 1..678 | 17..694 | 3390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:10:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS26-RA | 825 | CG7354-RA | 84..761 | 17..694 | 3390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:10:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18106967..18107435 | 226..694 | 2345 | 100 | Plus |
3L | 28110227 | 3L | 18106662..18106870 | 17..225 | 1045 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:10:13 has no hits.
BS12130.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:46:32 Download gff for
BS12130.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS26-RA | 1..678 | 17..694 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:21:36 Download gff for
BS12130.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS26-RA | 82..759 | 17..694 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:18 Download gff for
BS12130.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS26-RA | 84..759 | 17..692 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:46:32 Download gff for
BS12130.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS26-RA | 82..759 | 17..694 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:12:24 Download gff for
BS12130.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS26-RA | 84..759 | 17..692 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:12:24 Download gff for
BS12130.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18106967..18107433 | 226..692 | 100 | | Plus |
3L | 18106662..18106870 | 17..225 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:18 Download gff for
BS12130.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18099762..18099970 | 17..225 | 100 | -> | Plus |
arm_3L | 18100067..18100533 | 226..692 | 100 | | Plus |
BS12130.pep Sequence
Translation from 16 to 693
> BS12130.pep
MLRAGCQLLTQSTLPTGKTVGNSFALEFVRWRRKPRWLPVAKSKMFRVPE
RKKQSEEERTELMRLHNQYKTQLRSVRQFLREEVVRHEETSTADHIVLTP
EQEEAEFQKCLDANAAWNAAIAKERDQRLAKKREEKVAYIQERLEAQQLR
EEERKEQANQRVLLEIERSKNYITRENLDAAIETALANPVDHNFAIDMAG
NLYHGRSTSQLPDATPEPNQQVLSN*
BS12130.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS26-PA | 225 | CG7354-PA | 1..225 | 1..225 | 1149 | 100 | Plus |