Clone BS12130 Report

Search the DGRC for BS12130

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:121
Well:30
Vector:pDNR-Dual
Associated Gene/TranscriptmRpS26-RA
Protein status:BS12130.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12130.3prime Sequence

708 bp (708 high quality bases) assembled on 2006-06-16

> BS12130.3prime
ATGGTCTAGAAAGCTTTTAATTACTCAAAACTTGCTGGTTGGGTTCGGGA
GTGGCGTCCGGGAGCTGAGAGGTGCTTCGTCCGTGGTAAAGATTACCGGC
CATATCGATGGCGAAATTGTGGTCCACGGGATTGGCCAACGCTGTCTCAA
TGGCTGCATCCAAGTTTTCCCTAGTGATATAGTTCTTGGAACGCTCAATC
TCGAGCAGCACCCGCTGGTTGGCCTGCTCCTTGCGCTCCTCCTCGCGCAG
CTGTTGTGCCTCCAATCGCTCCTGAATATAGGCCACCTTTTCCTCACGCT
TCTTGGCCAATCGCTGATCACGCTCCTTGGCTATGGCAGCGTTCCAGGCA
GCATTGGCATCCAGGCATTTCTGGAACTCGGCCTCCTCCTGCTCGGGAGT
GAGCACGATGTGATCTGCTGTGGATGTTTCCTCGTGGCGGACGACTTCCT
CCCTTAGAAACTGACGCACTGAGCGAAGCTGCGTTTTGTACTGGTTGTGT
AGCCTCATGAGCTCCGTGCGCTCCTCCTCCGACTGCTTCTTGCGTTCAGG
CACGCGGAACATCTTGCTCTTGGCCACCGGCAGCCATCGCGGTTTCCTGC
GCCAGCGGACGAACTCGAGGGCGAAACTATTTCCGACCGTCTTCCCGGTG
GGCAGGGTGGACTGCGTCAGCAGCTGGCATCCCGCTCGCAGCATGTCGAC
TGATAACT

BS12130.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:28:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG7354-PA 678 mRpS26-RA 1..678 694..17 3390 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:23:21
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS26-RA 825 CG7354-RA 84..761 694..17 3390 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:23:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18106967..18107435 485..17 2345 100 Minus
3L 28110227 3L 18106662..18106870 694..486 1045 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:23:18 has no hits.

BS12130.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:05 Download gff for BS12130.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7354-PA 1..678 17..694 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:05:44 Download gff for BS12130.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpS26-RA 84..761 17..694 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:41:16 Download gff for BS12130.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpS26-RA 84..761 17..694 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:41:16 Download gff for BS12130.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 18106662..18106870 486..694 100 -> Minus
3L 18106967..18107435 17..485 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:05:44 Download gff for BS12130.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18099762..18099970 486..694 100 -> Minus
arm_3L 18100067..18100535 17..485 100   Minus

BS12130.5prime Sequence

708 bp (708 high quality bases) assembled on 2006-06-16

> BS12130.5prime
GAAGTTATCAGTCGACATGCTGCGAGCGGGATGCCAGCTGCTGACGCAGT
CCACCCTGCCCACCGGGAAGACGGTCGGAAATAGTTTCGCCCTCGAGTTC
GTCCGCTGGCGCAGGAAACCGCGATGGCTGCCGGTGGCCAAGAGCAAGAT
GTTCCGCGTGCCTGAACGCAAGAAGCAGTCGGAGGAGGAGCGCACGGAGC
TCATGAGGCTACACAACCAGTACAAAACGCAGCTTCGCTCAGTGCGTCAG
TTTCTAAGGGAGGAAGTCGTCCGCCACGAGGAAACATCCACAGCAGATCA
CATCGTGCTCACTCCCGAGCAGGAGGAGGCCGAGTTCCAGAAATGCCTGG
ATGCCAATGCTGCCTGGAACGCTGCCATAGCCAAGGAGCGTGATCAGCGA
TTGGCCAAGAAGCGTGAGGAAAAGGTGGCCTATATTCAGGAGCGATTGGA
GGCACAACAGCTGCGCGAGGAGGAGCGCAAGGAGCAGGCCAACCAGCGGG
TGCTGCTCGAGATTGAGCGTTCCAAGAACTATATCACTAGGGAAAACTTG
GATGCAGCCATTGAGACAGCGTTGGCCAATCCCGTGGACCACAATTTCGC
CATCGATATGGCCGGTAATCTTTACCACGGACGAAGCACCTCTCAGCTCC
CGGACGCCACTCCCGAACCCAACCAGCAAGTTTTGAGTAATTAAAAGCTT
TCTAGACC

BS12130.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:28:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG7354-PA 678 mRpS26-RA 1..678 17..694 3390 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:38:40
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS26-RA 825 CG7354-RA 84..761 17..694 3390 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:38:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18106967..18107435 226..694 2345 100 Plus
3L 28110227 3L 18106662..18106870 17..225 1045 100 Plus
Blast to na_te.dros performed on 2015-02-03 06:38:36 has no hits.

BS12130.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:31:06 Download gff for BS12130.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7354-PA 1..678 17..694 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:29:55 Download gff for BS12130.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpS26-RA 84..761 17..694 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:38:16 Download gff for BS12130.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpS26-RA 84..761 17..694 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:38:16 Download gff for BS12130.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 18106662..18106870 17..225 100 -> Plus
3L 18106967..18107435 226..694 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:29:55 Download gff for BS12130.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18099762..18099970 17..225 100 -> Plus
arm_3L 18100067..18100535 226..694 100   Plus

BS12130.complete Sequence

710 bp assembled on 2006-11-01

GenBank Submission: FJ637080

> BS12130.complete
GAAGTTATCAGTCGACATGCTGCGAGCGGGATGCCAGCTGCTGACGCAGT
CCACCCTGCCCACCGGGAAGACGGTCGGAAATAGTTTCGCCCTCGAGTTC
GTCCGCTGGCGCAGGAAACCGCGATGGCTGCCGGTGGCCAAGAGCAAGAT
GTTCCGCGTGCCTGAACGCAAGAAGCAGTCGGAGGAGGAGCGCACGGAGC
TCATGAGGCTACACAACCAGTACAAAACGCAGCTTCGCTCAGTGCGTCAG
TTTCTAAGGGAGGAAGTCGTCCGCCACGAGGAAACATCCACAGCAGATCA
CATCGTGCTCACTCCCGAGCAGGAGGAGGCCGAGTTCCAGAAATGCCTGG
ATGCCAATGCTGCCTGGAACGCTGCCATAGCCAAGGAGCGTGATCAGCGA
TTGGCCAAGAAGCGTGAGGAAAAGGTGGCCTATATTCAGGAGCGATTGGA
GGCACAACAGCTGCGCGAGGAGGAGCGCAAGGAGCAGGCCAACCAGCGGG
TGCTGCTCGAGATTGAGCGTTCCAAGAACTATATCACTAGGGAAAACTTG
GATGCAGCCATTGAGACAGCGTTGGCCAATCCCGTGGACCACAATTTCGC
CATCGATATGGCCGGTAATCTTTACCACGGACGAAGCACCTCTCAGCTCC
CGGACGCCACTCCCGAACCCAACCAGCAAGTTTTGAGTAATTAAAAGCTT
TCTAGACCAT

BS12130.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:10:14
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS26-RA 678 CG7354-PA 1..678 17..694 3390 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:10:15
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS26-RA 825 CG7354-RA 84..761 17..694 3390 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:10:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18106967..18107435 226..694 2345 100 Plus
3L 28110227 3L 18106662..18106870 17..225 1045 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:10:13 has no hits.

BS12130.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:46:32 Download gff for BS12130.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS26-RA 1..678 17..694 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:21:36 Download gff for BS12130.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS26-RA 82..759 17..694 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:18 Download gff for BS12130.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS26-RA 84..759 17..692 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:46:32 Download gff for BS12130.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS26-RA 82..759 17..694 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:12:24 Download gff for BS12130.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS26-RA 84..759 17..692 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:12:24 Download gff for BS12130.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18106967..18107433 226..692 100   Plus
3L 18106662..18106870 17..225 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:18 Download gff for BS12130.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18099762..18099970 17..225 100 -> Plus
arm_3L 18100067..18100533 226..692 100   Plus

BS12130.pep Sequence

Translation from 16 to 693

> BS12130.pep
MLRAGCQLLTQSTLPTGKTVGNSFALEFVRWRRKPRWLPVAKSKMFRVPE
RKKQSEEERTELMRLHNQYKTQLRSVRQFLREEVVRHEETSTADHIVLTP
EQEEAEFQKCLDANAAWNAAIAKERDQRLAKKREEKVAYIQERLEAQQLR
EEERKEQANQRVLLEIERSKNYITRENLDAAIETALANPVDHNFAIDMAG
NLYHGRSTSQLPDATPEPNQQVLSN*

BS12130.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:01
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS26-PA 225 CG7354-PA 1..225 1..225 1149 100 Plus